jgi.p|Nanoce1779_2|604299, mRNA_8859 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|604299
Unique NamemRNA_8859
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length859
Alignment locationscaffold_29:42890..43849 +

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Properties
Property NameValue
TranscriptId604385
TrackFilteredModels2
ProteinId604299
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_29supercontigscaffold_29:42890..43849 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|604299gene_8859Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|604299mRNA_8859-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8859CDS_8859Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8859 ID=mRNA_8859|Name=jgi.p|Nanoce1779_2|604299|organism=Nannochloropsis oceanica|type=mRNA|length=859bp
CTTGCCACTGCTTGTCGTCTCATCGCATGACTAGGCCCCCGCAAAACCAC
GGAAGCGGGCAACTTTTATCCTCTTCGTCATCTTGCAGCTGATATTCTGC
TCCAAAGCCAAGACTTGTCAGCATGTACGATCACCGGCCTCCCCTCCAAC
CCGACCCTTGGCCTTCGAGAAAATCGAGCACAGATACTGAAACGTACCCC
CACGTGCCATCCGCCAACCCTACATCCAACCCACAGCAAGAATGGCGCGC
CAACACGCCCAAAGTCCAGTCCTCTCCCTGCAGTTCCTCCTGGTAGTGGT
GATCGTGACCCTGCTGGTGGAGCGTGCCGCGGCCTTCATCCCTCGCCTCC
CCCTGCTCTCCGGGGCCTCTTCCTCTGCGCTAAAAATGGTTGCTGTGGAC
GATTCCACCACGCTCGTGGGCATGACTCATGACGAGTACATTGGAACGCT
CCCTGAACAGGCCAAATCTATGGCGGCCGAATGGCAGTACCTGCTCGTCG
AGCGCCTAGAGCCCCCCACCCAAACACAAGGCGGGCTTTTCCTCCCCTCT
ACCGACCAGGACCCATTGCACATGGTGCGTATCGTGTCGATCGGCTCGGG
GCTAGTGGGAGAGAGTGGGGTATTGACCCAGATTCAGAACTTGAAGGCAG
GCGACGTGGCGATGGTGAAGCAACCGTGGGGGATTGGCCCGAGGGATGAG
ACGTGGGAGGGTAGGAAGTTTTCGTTTATTCGGAGTCATGATGTGTTGAG
TCGGATCGGGGCCACCCAGGAGTAGGGAGGGAGGGAGGAAGGGAGGGAAG
GGGAAATGGAGAGAAAAAAGAATGTGTGAGTGAGGAGTACATGAAGTGGT
GATCGTGGG
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protein sequence of jgi.p|Nanoce1779_2|604299

>mRNA_8859-protein ID=mRNA_8859-protein|Name=jgi.p|Nanoce1779_2|604299|organism=Nannochloropsis oceanica|type=polypeptide|length=178bp
MARQHAQSPVLSLQFLLVVVIVTLLVERAAAFIPRLPLLSGASSSALKMV
AVDDSTTLVGMTHDEYIGTLPEQAKSMAAEWQYLLVERLEPPTQTQGGLF
LPSTDQDPLHMVRIVSIGSGLVGESGVLTQIQNLKAGDVAMVKQPWGIGP
RDETWEGRKFSFIRSHDVLSRIGATQE*
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mRNA from alignment at scaffold_29:42890..43849+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8859 ID=mRNA_8859|Name=jgi.p|Nanoce1779_2|604299|organism=Nannochloropsis oceanica|type=mRNA|length=960bp|location=Sequence derived from alignment at scaffold_29:42890..43849+ (Nannochloropsis oceanica)
CTTGCCACTGCTTGTCGTCTCATCGCATGACTAGGCCCCCGCAAAACCAC
GGAAGCGGGCAACTTTTATCCTCTTCGTCATCTTGCAGCTGATATTCTGC
TCCAAAGCCAAGACTTGTCAGCATGTACGATCACCGGCCTCCCCTCCAAC
CCGACCCTTGGCCTTCGAGAAAATCGAGCACAGATACTGAAACGTACCCC
CACGTGCCATCCGCCAACCCTACATCCAACCCACAGCAAGAATGGCGCGC
CAACACGCCCAAAGTCCAGTCCTCTCCCTGCAGTTCCTCCTGGTAGTGGT
GATCGTGACCCTGCTGGTGGAGCGTGCCGCGGCCTTCATCCCTCGCCTCC
CCCTGCTCTCCGGGGCCTCTTCCTCTGCGCTAAAAATGGTTGCTGTGGAC
GATTCCACCACGCTCGTGGGCATGACTCATGACGAGTACATTGGAACGCT
CCCTGAACAGGTATGTGAGAAAGTGTAAAGGCTCATCTTTGCAGGCTGTA
CGGGTGATGCAAGCATGTATCACTCACCCTCCCTGTCTCCCAACCTTCCC
CCTTTTTACAGGCCAAATCTATGGCGGCCGAATGGCAGTACCTGCTCGTC
GAGCGCCTAGAGCCCCCCACCCAAACACAAGGCGGGCTTTTCCTCCCCTC
TACCGACCAGGACCCATTGCACATGGTGCGTATCGTGTCGATCGGCTCGG
GGCTAGTGGGAGAGAGTGGGGTATTGACCCAGATTCAGAACTTGAAGGCA
GGCGACGTGGCGATGGTGAAGCAACCGTGGGGGATTGGCCCGAGGGATGA
GACGTGGGAGGGTAGGAAGTTTTCGTTTATTCGGAGTCATGATGTGTTGA
GTCGGATCGGGGCCACCCAGGAGTAGGGAGGGAGGGAGGAAGGGAGGGAA
GGGGAAATGGAGAGAAAAAAGAATGTGTGAGTGAGGAGTACATGAAGTGG
TGATCGTGGG
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Coding sequence (CDS) from alignment at scaffold_29:42890..43849+

>mRNA_8859 ID=mRNA_8859|Name=jgi.p|Nanoce1779_2|604299|organism=Nannochloropsis oceanica|type=CDS|length=1068bp|location=Sequence derived from alignment at scaffold_29:42890..43849+ (Nannochloropsis oceanica)
ATGGCGCGCCAACACGCCCAAAGTCCAGTCCTCTCCCTGCAGTTCCTCCT
GGTAGTGGTGATCGTGACCCTGCTGGTGGAGCGTGCCGCGGCCTTCATCC
CTCGCCTCCCCCTGCTCTCCGGGGCCTCTTCCTCTGCGCTAAAAATGGTT
GCTGTGGACGATTCCACCACGCTCGTGGGCATGACTCATGACGAGTACAT
TGGAACGCTCCCTGAACAGGCCAAATCTATGGCGGCCGAATGGCAGTACC
TGCTCGTCGAGCGCCTAGAGCCCCCCACCCAAACACAAGGCGGGCTTTTC
CTCCCCTCTACCGACCAGGACCCATTGCACATGGTGCGTATCGTGTCGAT
CGGCTCGGGGCTAGTGGGAGAGAGTGGGGTATTGACCCAGATTCAGAACT
TGAAGGCAGGCGACGTGGCGATGGTGAAGCAACCGTGGGGGATTGGCCCG
AGGGATGAGACGTGGGAGGGTAGGAAGTTTTCGTTTATTCGGAGTCATGA
TGTGTTGAGTCGGATCGGGGCCACCCAGGAGTAGATGGCGCGCCAACACG
CCCAAAGTCCAGTCCTCTCCCTGCAGTTCCTCCTGGTAGTGGTGATCGTG
ACCCTGCTGGTGGAGCGTGCCGCGGCCTTCATCCCTCGCCTCCCCCTGCT
CTCCGGGGCCTCTTCCTCTGCGCTAAAAATGGTTGCTGTGGACGATTCCA
CCACGCTCGTGGGCATGACTCATGACGAGTACATTGGAACGCTCCCTGAA
CAGGCCAAATCTATGGCGGCCGAATGGCAGTACCTGCTCGTCGAGCGCCT
AGAGCCCCCCACCCAAACACAAGGCGGGCTTTTCCTCCCCTCTACCGACC
AGGACCCATTGCACATGGTGCGTATCGTGTCGATCGGCTCGGGGCTAGTG
GGAGAGAGTGGGGTATTGACCCAGATTCAGAACTTGAAGGCAGGCGACGT
GGCGATGGTGAAGCAACCGTGGGGGATTGGCCCGAGGGATGAGACGTGGG
AGGGTAGGAAGTTTTCGTTTATTCGGAGTCATGATGTGTTGAGTCGGATC
GGGGCCACCCAGGAGTAG
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Synonyms
Publications