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Properties
| Property Name | Value |
|---|
| TranscriptId | 604376 |
| Track | FilteredModels2 |
| ProteinId | 604290 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_29 | supercontig | scaffold_29:37097..40880 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_8857 ID=mRNA_8857|Name=jgi.p|Nanoce1779_2|604290|organism=Nannochloropsis oceanica|type=mRNA|length=1788bp
TAATAAAGATAAAAACACAGACAGCCCACCCCACCAGCAACAAGCCATGG
CGATGCCAAGCCAGGGTCTGGAGCAGTCGATGCGGCTCAAGCCTGGGGAA
GTCGCGACGGGCACCACCATCATGGCCGTAGAGTTCGACGGCGGTGTAGT
CCTGGGTGCCGACTCGCGTACCTCCACGGGGACCTACGTGGCCAACCGTG
TCAGTGACAAGCTCACGGCGTTGCACCATCACATCTACTGCTGCCGCTCG
GGGTCTGCCGCCGACACGCAAGCCTTATCTGATTACGTGCGTTATTTCTT
GGCCTCGCATTCGATCGATTTGGGACGGGCCCCGGCTGTTTCCACGGCGG
CAAAGCTGATGTCCACTATGATCTACCGGAACAAGGATAATTTGATGGCC
GGCGTGATCATCGGTGGTTGGGACCCGAAGGACGGCGGGCAGGTGTACAC
GGTCACCCTGGGCGGCACTTTGCAACGGCAGAAATTCTCGATTGGCGGCT
CGGGTTCGACCTATATTTACGGGCACGTAGACGAGGCCTTCAAGGAACAA
ATGACGCGAGAGGAGTGCCAGGCCTTCGTCAAGAAAGCCATCTCTCACGC
CATGGCCCGTGATGGTTCCTCGGGTGGTGTGATTCGCATGGTGACCATCG
ACAAGTCGGGAGTCGCGCGGGAGTTTATTCCGGGCGACAAGCTACCTTAC
GGACCCTAGGCGCGGGGCAGTGTGTGGATAGAGAAGGAGGGAGAGGGGGA
GGATGGGGAAGGCGGGAGAGGAAGGTGGAGGAATCAAATCTGTCTCTGGT
TGTTCATCCTCTTATCAATCAAAAGAAATAGGGGAGACAGAAGAAGCAGC
TGCTTTGCAGGACCCAGTGCTGGGTATCCTTCGTTGCTTTGTCTGCCATT
TCGAGAGAGCCAGAGCCGGGGCCTCACGACTAGTGTCTTTCTGTAGCCCT
CTTATCTTGTTGACGCATCTCAAGGATATATTTCTGTTCTAGCAATTTTT
CGCTTTCCCTTATAGGGTTCATTCTTTCATTTCATTTTCGCTTAGTCATA
CATACCAGCCCGGCCCGTGCAGAAACACGAGGCTTACCTCCAGTATATTA
CATCCAGGTTTCACATATGAGAGCTTGTGTGCCCCATATATCCTTCATTC
CTTTCCTCCCTCCCTCCTCCTTCCTCCGTTACCTTCCTCGCTTTTTCCCC
GCCTTGATAATTCCAAAACGCAAATCAGGTAAGGCCAATCCAGCCCACCC
CTATCCCCTCTCCCATACTCTATTCAGAGGTGGGTAAGAAACGAGTCGAT
TTCCAAGTCCTCGCGTTACGAATCGAAATATCTCCACATCTTATATTTGA
GTGCCTGAGCATTCCATTCCTCTTCCGCTCCCTCTTCCCGGCCCTCCCTC
TTCAGGTAGTGCTCGGCCTTCCTCCCCGCCTTGGTATTCGCAAACCGAGG
TGCCTCCAGACGCGCCCACACCAACAGTTTCTCCCATTTACTCAGCGGCT
GATAAGGCGTCATCTCCTTCTCAAGTTTGAAGGCGGCAATGACGGGCCAC
GCGGGGCTGGAGGAGGGGATGGCACGCCGAGGCCGACGACGAGCAGTGGC
TGCATCCTTCCCCTCCTCCCTCCCTCCCCCCTCTGTTCCTTCTTTTTCTG
GAGACGAGGTTTGTGGCCTCTTTTCTCCTTGCTCTTCGGATGGAGGGGAG
GAAGGGAGGGAGGAAGGGAGGGAGGAAGGGCGAACGCGGACGGTCCCTGT
GACGTGGCACCAGTGCTTGGGTTTCCGGCGGACCTCAC back to topprotein sequence of jgi.p|Nanoce1779_2|604290 >mRNA_8857-protein ID=mRNA_8857-protein|Name=jgi.p|Nanoce1779_2|604290|organism=Nannochloropsis oceanica|type=polypeptide|length=221bp
MAMPSQGLEQSMRLKPGEVATGTTIMAVEFDGGVVLGADSRTSTGTYVAN
RVSDKLTALHHHIYCCRSGSAADTQALSDYVRYFLASHSIDLGRAPAVST
AAKLMSTMIYRNKDNLMAGVIIGGWDPKDGGQVYTVTLGGTLQRQKFSIG
GSGSTYIYGHVDEAFKEQMTREECQAFVKKAISHAMARDGSSGGVIRMVT
IDKSGVAREFIPGDKLPYGP* back to topmRNA from alignment at scaffold_29:37097..40880+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_8857 ID=mRNA_8857|Name=jgi.p|Nanoce1779_2|604290|organism=Nannochloropsis oceanica|type=mRNA|length=3784bp|location=Sequence derived from alignment at scaffold_29:37097..40880+ (Nannochloropsis oceanica)
TAATAAAGATAAAAACACTCCTAATCCTAACCCACCCAAAGCAAACGTCC
CCGGTCGATGGAAAGCCGACGCGCTCAAAGCAAGGCCCATCCCAGACCCC
ACCACTCCCGCTGCCAGCGTCACGGCCAGCTTCCCTGCGAATCGAGTGCA
ATACAACTCCACTGGATCCAAGGCTGCTGCAGCTCCTCCTCCATCTAGCT
CCTCTTCCTCCATCCCTCCCTCCCCCTCATCTACATAATACTCATCATTG
AACCCATATCCACGCACCGGTGGCCGCCCTCCTGCTGCCCCAAAGGCTCC
TGTTGCGCCTCGTCGCGCCGCACTCCTCCCGCCGGGAGGGACAGGTAAGG
AAGAAGACGAGGAGGGGCGACGTCGGCCTCCTGGTGCTGCAGGCGGAGGA
GGGATGTCGTCACTACCATCGAAGTCATAGGGCGCATATCCACCACCAGG
TGGTGCGGAGGGTGGTGGCTGCTCATAGGGACGGCCGGAGGAATAGGGGG
AAGAACCATCTTGGTATGGCCATTGGTTGCCGCTGATGCTGCTCCCTGAC
GATGATGAAGAAGGAGAAGGATGGGCTTGTACGACAATGAAACAAGAGGG
AGAGAAGGAAAAGAGAAGGCTGGCGGCCGCAGCGGCGGCGGCGGCTGTGG
AGAGTGCGCAGGTGAGGGGGCGTGGTCGTTTGGGTCTTCTCCTTGTTGGG
GAAGTCCGAGGTTCCAACATGATGCTTGGCCAAGCAGGATGAGAGAGAGG
GCGGCTGACAAGGCCTGTCGAATAGGGAAGAATGGAGGAGGCGTAATTAA
TGTGTGTATTATTAACCAAGGCAAGGCGTGATATTAATGGTGGTCATGGA
AGAGGCTCCCTCGACCCCGCAGGAGAGGCGATCTGTTGGGGCCATTGGCT
TGGTTAATTCGTTTTTGGATGCGCATGCTACGACAACAATATGTGGCTTT
GGCAGTATGGTGTTCTCCATCTCCTCCTCACCCTTTTCGTCCTCGTGCTG
GTGTCAGCGTGGCTACATTTATGGATGAGCTGAGGTAGTGGTAGAATTGG
ATGTATAGCCGCTCCTGATAGAAGCCGTAGCACCTGCTCGCGGACACTCG
CTGTGTCCGATGACGGCCTCGATTCTTCGTCTTCGCTGCCCTCCTTTTGC
CATCCCAATGCACGCCTCAAACATACCCAAGCTGCCCGGCAGACACACCG
ACATGCACGTCTACAACGGATTCAACGTGTAGCCCTCAAAGCCGCTGTTA
GGACTGGCTTTTTGCCCTTCTCTCCTGATCTTGCTTCCACTGTCTTGTAT
GCTTCGCTGCTGAATTCCTCTTCTCATCATCCCACCACACATACACCGCA
GACAGCCCACCCCACCAGCAACAAGCCATGGCGATGCCAAGCCAGGGTCT
GGAGCAGTCGATGCGGCTCAAGCCTGGGGAAGTCGCGACGGGCGTAAGTT
TGGGCTTGTCACTTTGCAATCCTCTCCTCCGCCTTCCTGGCCTCCTCACC
CCCTCCCTCCCTCCCTCTCCTCCCCTTTCACCCCACCACCAAGACCACCA
TCATGGCCGTAGAGTTCGACGGCGGTGTAGTCCTGGGTGCCGACTCGCGT
ACCTCCACGGGGACCTACGTGGCCAACCGTGTCAGTGACAAGCTCACGGC
GTTGCACCATCACATCTACTGCTGCCGCTCGGGGTCTGCCGCCGACACGC
AAGCCTTATCTGATTACGTGCGTTATTTCTTGGCCTCGCATTCGATCGAT
TTGGGACGGGCCCCGGCTGTTTCCACGGCGGCAAAGCTGATGTCCACTAT
GATCTACCGGAACAAGGATAATTTGATGGGTGAGGGAGAGAGGGAGGGAG
GACGAAGGGGAATGGTTCGAAACCGACTGGTATAGAATAATGTGTAAGCA
CGCATTTTAATGTCTTGAGGCAGGGGAAGAAAAGCGAGCTCTATTGACAC
CTGACTTTTAACCCACATATCTCCCTGCGTTTCCTCCTCCCTCCCTCCCT
CCCTCCCTCCCTCCCTCCCTTCCCTGCCAGCCGGCGTGATCATCGGTGGT
TGGGACCCGAAGGACGGCGGGCAGGTGTACACGGTCACCCTGGGCGGCAC
TTTGCAACGGCAGAAATTCTCGATTGGCGGTGGGTGGAGGGGGGCAGGGA
GGGAAGGAGGGCGGGACAGGAGATGCATAGGAGAGCAGGCATGGATGGGG
CAAGGTGCTTTTACGGACATTTTCTCCTCCTACTCACACCTTTCTCCACC
TTTCTCTTCCGGTAGGCTCGGGTTCGACCTATATTTACGGGCACGTAGAC
GAGGCCTTCAAGGAACAAATGACGCGAGAGGAGTGCCAGGCCTTCGTCAA
GAAAGGTAAGTCCTCTCCTCCCTCCCCCCCTCCCTTCCTCCCTCCCTCGC
CCACTCCCCTAACGCGTTCACTCGCCCCCCCCTCTCTCCCTCCTTTCCTC
TCCCCCCTCAGCCATCTCTCACGCCATGGCCCGTGATGGTTCCTCGGGTG
GTGTGATTCGCATGGTGACCATCGACAAGTCGGGAGTCGCGCGGGAGTTT
ATTCCGGGTAGGGATGGAGGGAGGGAGGGAGGGCGTGTATGTGTATGGGT
ACGTGGAGAGCGAGAAAGGGAGAGAAGGATCACAATTATTGACACGACTT
TTCGTTCTTTATGTCGTTGTGTCTCACAGGCGACAAGCTACCTTACGGAC
CCTAGGCGCGGGGCAGTGTGTGGATAGAGAAGGAGGGAGAGGGGGAGGAT
GGGGAAGGCGGGAGAGGAAGGTGGAGGAATCAAATCTGTCTCTGGTTGTT
CATCCTCTTATCAATCAAAAGAAATAGGGGAGACAGAAGAAGCAGCTGCT
TTGCAGGACCCAGTGCTGGGTATCCTTCGTTGCTTTGTCTGCCATTTCGA
GAGAGCCAGAGCCGGGGCCTCACGACTAGTGTCTTTCTGTAGCCCTCTTA
TCTTGTTGACGCATCTCAAGGATATATTTCTGTTCTAGCAATTTTTCGCT
TTCCCTTATAGGGTTCATTCTTTCATTTCATTTTCGCTTAGTCATACATA
CCAGCCCGGCCCGTGCAGAAACACGAGGCTTACCTCCAGTATATTACATC
CAGGTTTCACATATGAGAGCTTGTGTGCCCCATATATCCTTCATTCCTTT
CCTCCCTCCCTCCTCCTTCCTCCGTTACCTTCCTCGCTTTTTCCCCGCCT
TGATAATTCCAAAACGCAAATCAGGTAAGGCCAATCCAGCCCACCCCTAT
CCCCTCTCCCATACTCTATTCAGAGGTGGGTAAGAAACGAGTCGATTTCC
AAGTCCTCGCGTTACGAATCGAAATATCTCCACATCTTATATTTGAGTGC
CTGAGCATTCCATTCCTCTTCCGCTCCCTCTTCCCGGCCCTCCCTCTTCA
GGTAGTGCTCGGCCTTCCTCCCCGCCTTGGTATTCGCAAACCGAGGTGCC
TCCAGACGCGCCCACACCAACAGTTTCTCCCATTTACTCAGCGGCTGATA
AGGCGTCATCTCCTTCTCAAGTTTGAAGGCGGCAATGACGGGCCACGCGG
GGCTGGAGGAGGGGATGGCACGCCGAGGCCGACGACGAGCAGTGGCTGCA
TCCTTCCCCTCCTCCCTCCCTCCCCCCTCTGTTCCTTCTTTTTCTGGAGA
CGAGGTTTGTGGCCTCTTTTCTCCTTGCTCTTCGGATGGAGGGGAGGAAG
GGAGGGAGGAAGGGAGGGAGGAAGGGCGAACGCGGACGGTCCCTGTGACG
TGGCACCAGTGCTTGGGTTTCCGGCGGACCTCAC back to topCoding sequence (CDS) from alignment at scaffold_29:37097..40880+ >mRNA_8857 ID=mRNA_8857|Name=jgi.p|Nanoce1779_2|604290|organism=Nannochloropsis oceanica|type=CDS|length=3978bp|location=Sequence derived from alignment at scaffold_29:37097..40880+ (Nannochloropsis oceanica)
ATGGCGATGCCAAGCCAGGGTCTGGAGCAGTCGATGCGGCTCAAGCCTGG
GGAAGTCGCGACGGGCACCACCATCATGGCCGTAGAGTTCGACGGCGGTG
TAGTCCTGGGTGCCGACTCGCGTACCTCCACGGGGACCTACGTGGCCAAC
CGTGTCAGTGACAAGCTCACGGCGTTGCACCATCACATCTACTGCTGCCG
CTCGGGGTCTGCCGCCGACACGCAAGCCTTATCTGATTACGTGCGTTATT
TCTTGGCCTCGCATTCGATCGATTTGGGACGGGCCCCGGCTGTTTCCACG
GCGGCAAAGCTGATGTCCACTATGATCTACCGGAACAAGGATAATTTGAT
GGCCGGCGTGATCATCGGTGGTTGGGACCCGAAGGACGGCGGGCAGGTGT
ACACGGTCACCCTGGGCGGCACTTTGCAACGGCAGAAATTCTCGATTGGC
GGCTCGGGTTCGACCTATATTTACGGGCACGTAGACGAGGCCTTCAAGGA
ACAAATGACGCGAGAGGAGTGCCAGGCCTTCGTCAAGAAAGCCATCTCTC
ACGCCATGGCCCGTGATGGTTCCTCGGGTGGTGTGATTCGCATGGTGACC
ATCGACAAGTCGGGAGTCGCGCGGGAGTTTATTCCGGGCGACAAGCTACC
TTACGGACCCTAGATGGCGATGCCAAGCCAGGGTCTGGAGCAGTCGATGC
GGCTCAAGCCTGGGGAAGTCGCGACGGGCACCACCATCATGGCCGTAGAG
TTCGACGGCGGTGTAGTCCTGGGTGCCGACTCGCGTACCTCCACGGGGAC
CTACGTGGCCAACCGTGTCAGTGACAAGCTCACGGCGTTGCACCATCACA
TCTACTGCTGCCGCTCGGGGTCTGCCGCCGACACGCAAGCCTTATCTGAT
TACGTGCGTTATTTCTTGGCCTCGCATTCGATCGATTTGGGACGGGCCCC
GGCTGTTTCCACGGCGGCAAAGCTGATGTCCACTATGATCTACCGGAACA
AGGATAATTTGATGGCCGGCGTGATCATCGGTGGTTGGGACCCGAAGGAC
GGCGGGCAGGTGTACACGGTCACCCTGGGCGGCACTTTGCAACGGCAGAA
ATTCTCGATTGGCGGCTCGGGTTCGACCTATATTTACGGGCACGTAGACG
AGGCCTTCAAGGAACAAATGACGCGAGAGGAGTGCCAGGCCTTCGTCAAG
AAAGCCATCTCTCACGCCATGGCCCGTGATGGTTCCTCGGGTGGTGTGAT
TCGCATGGTGACCATCGACAAGTCGGGAGTCGCGCGGGAGTTTATTCCGG
GCGACAAGCTACCTTACGGACCCTAGATGGCGATGCCAAGCCAGGGTCTG
GAGCAGTCGATGCGGCTCAAGCCTGGGGAAGTCGCGACGGGCACCACCAT
CATGGCCGTAGAGTTCGACGGCGGTGTAGTCCTGGGTGCCGACTCGCGTA
CCTCCACGGGGACCTACGTGGCCAACCGTGTCAGTGACAAGCTCACGGCG
TTGCACCATCACATCTACTGCTGCCGCTCGGGGTCTGCCGCCGACACGCA
AGCCTTATCTGATTACGTGCGTTATTTCTTGGCCTCGCATTCGATCGATT
TGGGACGGGCCCCGGCTGTTTCCACGGCGGCAAAGCTGATGTCCACTATG
ATCTACCGGAACAAGGATAATTTGATGGCCGGCGTGATCATCGGTGGTTG
GGACCCGAAGGACGGCGGGCAGGTGTACACGGTCACCCTGGGCGGCACTT
TGCAACGGCAGAAATTCTCGATTGGCGGCTCGGGTTCGACCTATATTTAC
GGGCACGTAGACGAGGCCTTCAAGGAACAAATGACGCGAGAGGAGTGCCA
GGCCTTCGTCAAGAAAGCCATCTCTCACGCCATGGCCCGTGATGGTTCCT
CGGGTGGTGTGATTCGCATGGTGACCATCGACAAGTCGGGAGTCGCGCGG
GAGTTTATTCCGGGCGACAAGCTACCTTACGGACCCTAGATGGCGATGCC
AAGCCAGGGTCTGGAGCAGTCGATGCGGCTCAAGCCTGGGGAAGTCGCGA
CGGGCACCACCATCATGGCCGTAGAGTTCGACGGCGGTGTAGTCCTGGGT
GCCGACTCGCGTACCTCCACGGGGACCTACGTGGCCAACCGTGTCAGTGA
CAAGCTCACGGCGTTGCACCATCACATCTACTGCTGCCGCTCGGGGTCTG
CCGCCGACACGCAAGCCTTATCTGATTACGTGCGTTATTTCTTGGCCTCG
CATTCGATCGATTTGGGACGGGCCCCGGCTGTTTCCACGGCGGCAAAGCT
GATGTCCACTATGATCTACCGGAACAAGGATAATTTGATGGCCGGCGTGA
TCATCGGTGGTTGGGACCCGAAGGACGGCGGGCAGGTGTACACGGTCACC
CTGGGCGGCACTTTGCAACGGCAGAAATTCTCGATTGGCGGCTCGGGTTC
GACCTATATTTACGGGCACGTAGACGAGGCCTTCAAGGAACAAATGACGC
GAGAGGAGTGCCAGGCCTTCGTCAAGAAAGCCATCTCTCACGCCATGGCC
CGTGATGGTTCCTCGGGTGGTGTGATTCGCATGGTGACCATCGACAAGTC
GGGAGTCGCGCGGGAGTTTATTCCGGGCGACAAGCTACCTTACGGACCCT
AGATGGCGATGCCAAGCCAGGGTCTGGAGCAGTCGATGCGGCTCAAGCCT
GGGGAAGTCGCGACGGGCACCACCATCATGGCCGTAGAGTTCGACGGCGG
TGTAGTCCTGGGTGCCGACTCGCGTACCTCCACGGGGACCTACGTGGCCA
ACCGTGTCAGTGACAAGCTCACGGCGTTGCACCATCACATCTACTGCTGC
CGCTCGGGGTCTGCCGCCGACACGCAAGCCTTATCTGATTACGTGCGTTA
TTTCTTGGCCTCGCATTCGATCGATTTGGGACGGGCCCCGGCTGTTTCCA
CGGCGGCAAAGCTGATGTCCACTATGATCTACCGGAACAAGGATAATTTG
ATGGCCGGCGTGATCATCGGTGGTTGGGACCCGAAGGACGGCGGGCAGGT
GTACACGGTCACCCTGGGCGGCACTTTGCAACGGCAGAAATTCTCGATTG
GCGGCTCGGGTTCGACCTATATTTACGGGCACGTAGACGAGGCCTTCAAG
GAACAAATGACGCGAGAGGAGTGCCAGGCCTTCGTCAAGAAAGCCATCTC
TCACGCCATGGCCCGTGATGGTTCCTCGGGTGGTGTGATTCGCATGGTGA
CCATCGACAAGTCGGGAGTCGCGCGGGAGTTTATTCCGGGCGACAAGCTA
CCTTACGGACCCTAGATGGCGATGCCAAGCCAGGGTCTGGAGCAGTCGAT
GCGGCTCAAGCCTGGGGAAGTCGCGACGGGCACCACCATCATGGCCGTAG
AGTTCGACGGCGGTGTAGTCCTGGGTGCCGACTCGCGTACCTCCACGGGG
ACCTACGTGGCCAACCGTGTCAGTGACAAGCTCACGGCGTTGCACCATCA
CATCTACTGCTGCCGCTCGGGGTCTGCCGCCGACACGCAAGCCTTATCTG
ATTACGTGCGTTATTTCTTGGCCTCGCATTCGATCGATTTGGGACGGGCC
CCGGCTGTTTCCACGGCGGCAAAGCTGATGTCCACTATGATCTACCGGAA
CAAGGATAATTTGATGGCCGGCGTGATCATCGGTGGTTGGGACCCGAAGG
ACGGCGGGCAGGTGTACACGGTCACCCTGGGCGGCACTTTGCAACGGCAG
AAATTCTCGATTGGCGGCTCGGGTTCGACCTATATTTACGGGCACGTAGA
CGAGGCCTTCAAGGAACAAATGACGCGAGAGGAGTGCCAGGCCTTCGTCA
AGAAAGCCATCTCTCACGCCATGGCCCGTGATGGTTCCTCGGGTGGTGTG
ATTCGCATGGTGACCATCGACAAGTCGGGAGTCGCGCGGGAGTTTATTCC
GGGCGACAAGCTACCTTACGGACCCTAG back to top
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