jgi.p|Nanoce1779_2|604289, mRNA_8855 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|604289
Unique NamemRNA_8855
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length892
Alignment locationscaffold_29:35439..36330 -

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Properties
Property NameValue
TranscriptId604375
TrackFilteredModels2
ProteinId604289
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_29supercontigscaffold_29:35439..36330 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|604289gene_8855Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|604289mRNA_8855-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8855CDS_8855Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8855 ID=mRNA_8855|Name=jgi.p|Nanoce1779_2|604289|organism=Nannochloropsis oceanica|type=mRNA|length=892bp
TTGGAGGGTACCCGGGAGGAAGATTTGAGCAGCCGACATATGGTGGGGAA
GAACGATGGCAAGGAGGAGGAAGGGCGGGAGCGAGGCCGCCTGTGAATTC
GTCGTGGGGGCAGCGATGAGGAGGAGGGGAAGTGGTTTTACAAAGGAATA
TTACAATAGAGTAATGGTAAACACAGGAAGTAACGGTAACTGGAGGAGAG
CGAAGGGAGAAGAGATATTCTATGATTATTTTTATGATGCTTTTCCTCAT
CTGTTATTTCTCCTATTCTTTCTTCTCTTTCTCCTTTTCTGGCTTCTCTG
AGAATGCACGTTACTCGTTCCTTTGCCGCGTCGGGGCTTGCATATCAACA
CCCAATTGCTTTGTTAAATCTCTTCTAAATTTACCAATGGATCTCCAGAT
TCACTTGTGCTCTATCTCACGCTCGCCCTCACCCCATAAATTTTCGGGAT
TGTGTTACAAAGAAGTGATTCTCGCTCTTTCTCCGCGCTGGACACCTCAT
GTGTAAATGCTGCATGCATCAATCAATACCTACCTCCTCCCCTCCTTCCC
GACATCCTGCTCTCCAACATGGAACCAACCGCCGGCCATGTGATTCTATC
CGAGGGAGCAAAACAAGGAACTAAGAAGGTGCCCCCCCTCCACTCATATT
TCTTCTTCTTCAGCCCCTCGACTGCTTCCTCTTCTTCAACGCCGCGCCAA
CCACCTTTCTGATGACGTTCACCGCCCCTTGTAACTCCGCCTGACTATGC
GCCGCCGACACCGTCAACCTCAACGATGGCAGCGCCAAAGCTACTCCTCC
TCCTGCTCTTTCCCCTCCCCTCCCTCCTTCCCTCTCTTCCACCAAACAAG
TCACCTTGCTAGTGACAACCGCATACCCCCCTGCCACGCAAC
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protein sequence of jgi.p|Nanoce1779_2|604289

>mRNA_8855-protein ID=mRNA_8855-protein|Name=jgi.p|Nanoce1779_2|604289|organism=Nannochloropsis oceanica|type=polypeptide|length=95bp
MIIFMMLFLICYFSYSFFSFSFSGFSENARYSFLCRVGACISTPNCFVKS
LLNLPMDLQIHLCSISRSPSPHKFSGLCYKEVILALSPRWTPHV*
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mRNA from alignment at scaffold_29:35439..36330-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8855 ID=mRNA_8855|Name=jgi.p|Nanoce1779_2|604289|organism=Nannochloropsis oceanica|type=mRNA|length=892bp|location=Sequence derived from alignment at scaffold_29:35439..36330- (Nannochloropsis oceanica)
TTGGAGGGTACCCGGGAGGAAGATTTGAGCAGCCGACATATGGTGGGGAA
GAACGATGGCAAGGAGGAGGAAGGGCGGGAGCGAGGCCGCCTGTGAATTC
GTCGTGGGGGCAGCGATGAGGAGGAGGGGAAGTGGTTTTACAAAGGAATA
TTACAATAGAGTAATGGTAAACACAGGAAGTAACGGTAACTGGAGGAGAG
CGAAGGGAGAAGAGATATTCTATGATTATTTTTATGATGCTTTTCCTCAT
CTGTTATTTCTCCTATTCTTTCTTCTCTTTCTCCTTTTCTGGCTTCTCTG
AGAATGCACGTTACTCGTTCCTTTGCCGCGTCGGGGCTTGCATATCAACA
CCCAATTGCTTTGTTAAATCTCTTCTAAATTTACCAATGGATCTCCAGAT
TCACTTGTGCTCTATCTCACGCTCGCCCTCACCCCATAAATTTTCGGGAT
TGTGTTACAAAGAAGTGATTCTCGCTCTTTCTCCGCGCTGGACACCTCAT
GTGTAAATGCTGCATGCATCAATCAATACCTACCTCCTCCCCTCCTTCCC
GACATCCTGCTCTCCAACATGGAACCAACCGCCGGCCATGTGATTCTATC
CGAGGGAGCAAAACAAGGAACTAAGAAGGTGCCCCCCCTCCACTCATATT
TCTTCTTCTTCAGCCCCTCGACTGCTTCCTCTTCTTCAACGCCGCGCCAA
CCACCTTTCTGATGACGTTCACCGCCCCTTGTAACTCCGCCTGACTATGC
GCCGCCGACACCGTCAACCTCAACGATGGCAGCGCCAAAGCTACTCCTCC
TCCTGCTCTTTCCCCTCCCCTCCCTCCTTCCCTCTCTTCCACCAAACAAG
TCACCTTGCTAGTGACAACCGCATACCCCCCTGCCACGCAAC
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Coding sequence (CDS) from alignment at scaffold_29:35439..36330-

>mRNA_8855 ID=mRNA_8855|Name=jgi.p|Nanoce1779_2|604289|organism=Nannochloropsis oceanica|type=CDS|length=285bp|location=Sequence derived from alignment at scaffold_29:35439..36330- (Nannochloropsis oceanica)
ATGATTATTTTTATGATGCTTTTCCTCATCTGTTATTTCTCCTATTCTTT
CTTCTCTTTCTCCTTTTCTGGCTTCTCTGAGAATGCACGTTACTCGTTCC
TTTGCCGCGTCGGGGCTTGCATATCAACACCCAATTGCTTTGTTAAATCT
CTTCTAAATTTACCAATGGATCTCCAGATTCACTTGTGCTCTATCTCACG
CTCGCCCTCACCCCATAAATTTTCGGGATTGTGTTACAAAGAAGTGATTC
TCGCTCTTTCTCCGCGCTGGACACCTCATGTGTAA
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Synonyms
Publications