jgi.p|Nanoce1779_2|673722, mRNA_8852 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|673722
Unique Name	mRNA_8852
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2794
Alignment location	scaffold_29:14669..17462 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	673808
Track	FilteredModels2
ProteinId	673722

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_29	supercontig	scaffold_29:14669..17462 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|673722	gene_8852	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|673722	mRNA_8852-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8852	CDS_8852	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_29:14669..17462+
coding sequence from alignment at scaffold_29:14669..17462+

mRNA sequence

>mRNA_8852 ID=mRNA_8852|Name=jgi.p|Nanoce1779_2|673722|organism=Nannochloropsis oceanica|type=mRNA|length=2794bp
ACAGTATACACAGTCCATTGCAATCTCACCATGTTTCGCTCGGGCAGGTC
AAAGTCGCGGGGCAAGTCCCTCGACGCCACTCCCACGGACTTGACCAGCC
TGGAGACGCACTTGACGGAAAAGACGGATCTGATCGACGACATTAAAAAG
GTACTCCCCATTACCGTGCAAGCATCGGGCATCGTGGCCATCGGCATGCA
GGGCGCGGGCAAGTCCACCGTCCTCGAATCCCTGACTGGCGTGCCTTTGT
CACGGGCAAGCGGGCTGCGACGCCCTGTCAAGGTCAAGATTGTCTGCGAT
CCCACCTGCGTCAAGGAATATGTCCTCGTCAGTGGCAGTGACCCTCTATT
CAAGCAAAATACGAAGCGTCTGGAAAACGCGGCTGATTTGCCTGCGGCGC
TTGTCAAACTCAACGAGCAGATGAACGTGGCTGGAAGCTTCCGACCGGCT
ACAGGTCATTTTATGGAAGACAAAGATGAGGCCTCGGATGCCACCATCGA
GGAAGAGGAGAGAGTGTACGTTGAGCAACCATCACGCTACATGCCAGATC
GCCATAGCGAGTCGATCACCGAGAGTAGTGCTGGGTTGATATATGTGCGC
GTCGTGCGTCCCTCCGGCCCCACCTACACCATCATTGACTTCCCTGCTTT
CAGCTGTCCGCCCGACGCTGCACAAGAAGCTTATCTTCGCCGCGTTTTAG
AGGAAGATGAGGATCCCAACAAGCTCATTTTGGCCGTTCTGTCAATCAAG
GACGTGTTTGACCATGCTGACATCATCCATCTCGCCAAGCGCCTCGACCC
TGCTTCCAAGCGCACTATCGGGGTCGTGACCAAAGCACACCTGGTCACCA
AAGACATGGGGATCGTCGAAAAGCTGCAAATGAACAGCAACAAGCCCCTT
GTCCTTCCACTGGGTTATGTGGCCGTCTGTGCCGCGGACCCCAACAACTC
TGCGGCTAATCGACAGGAAGTTATGCAATTTGAACATGCCTTCTTCTCGT
CCAACCCCTTGCTGAAAGGTCTACGACAGGAGAGGTGGGGATTGGCCTCT
CTCAAGTCGTTGGTATTGAATTATCAGAAGAATGGTATCACACAGCGCCT
TCCAGAGCTGAGCCAGGCGATCCGAACAGAGATTGAGGAGTTGAGCGCAG
ACCTCCACCAGGAGCAGTACCATCACCAGCACGCGCACCAGCAGAAGCAC
ATGAGTAAGGCGCAAGGACATCCGGTGGCCCCTGCTGTTGTTTTTGATCA
GTTTGAGGACGTGTTTAGTAGGCTGTGTTCGGAGATGACCTTCGTTATGT
TTGATGTGAAGGAGTTGGCCGACAACAGTAGTTCGCGGCAAGACCGCAAG
CTTAATCTGGGGCCTCGATACCAACTTGCAGTGGAAGGGAGGGAGGCCGA
GGCCAGGAGGGCGTTGCCTAGCTATACATCTGCAGAGGTGGCTGAGTGGT
TGAATAAGGAGATGGGGGAGTTTAGGGGGGTGATTGCGAATGCGAATTAT
CTGATGCATCCTGTCTTTAGGAAGGCGATTCGTGAGTTGGTTTTCCCTGT
GTTGCGAGTGTATGCGAGGGGGGTGATCCAGGATATGGACGATATGCTTC
AGTACACGGCGCAGGAGCTGGTGGGGGAGAGGTTCAGGCCGTATACGCGG
CTGCTTGAGGCGTTGATGAGGGATGTGACGCAGGTACAGGCGGCGAAGAA
GGAAGAGGCAGAAAGGTTGGTGGGGAGGCTGTTAGAAGCGGAGCTGAATT
GGAATTTTGTCGATGAAGTGGATTTGGCGTTCATTTCACAACAAATTGAG
AAGAATGTGGCGGCCAACGAGAGAGGAGAGAGTGCGGGGAGGATGGAGGC
GGATGACATGTGGGATGCGCTCGGGGTGGAGGGGGGGGCTGGAGGGGGGG
CGGGGGGAGAGGGGGGGCTGGGGAGGAGCAAAAGTGGCAAGGTGTTTTTG
CAGTCGAGCCACTCGAGAGAGCTGCAGGTGATGCAGTGCACGCTTCATTA
CTATGTGCAGTTGCTACTGCGGCGTGTATTCTATGCGATTCCGACGAATA
CGAGGAACGTTATGATCAATGAGTTCAGGCATGATCTGATGTCTGTCGTG
GCGGCCAAGTATAACGACGATATCAAGCTCCGCGCGCTCATGTCTGAAGA
GCTGTGGGCCGAACAGAGCCGCCAGCAGCGCGCTATGCGCAAGGCAGCGT
TGGAGGAGGTGATGGGCAGGTTGGACTTGCTGTCGTAGGTTGAGTCGGAG
TTAAGTGTTGGCAGGGATTCTCAGGATTGCACCGTTGGTATGTATGTATA
CTTATTATCAACATAGATATTTTTATACAAGTAAGCCGACAGCAAGTCGA
TCGACGATGGCGCATGCGCATGGTTTATTTCGGACGTCGATTAGAGAGGT
TGTGCAAGCCTGTGCTGCGTGCGTATGTCACATGGCGGCGTCTTTGATAG
ATTTGATGAAGAAGTTCAATACGTTGTAAGAAAGCGAAGAAACAAAGAGG
AAAATGCGAGGTAAAGGATGCGAAACAGACAATGATGAAGAGGGGGAGGT
CATGACAAAGAGTGGCATACAGCGGCAGACAGAAACAGACAGAGACAATG
TCAAAGCGGATGCAATGAAAAAGGGAGGCAGACAGGGATAGAAAGACGAT
TTATCCCCAAACGGATGATGAAGTAAAAAACAACAAGACGGCCTTCAAGA
GGGAAGAGACAGGATATATAACATGCACACACCAACTGGAAGAAGAATGT
AAACTATTATGCACCCTTACAACTGCCGACCGCGTATATAGTGT

protein sequence of jgi.p|Nanoce1779_2|673722

>mRNA_8852-protein ID=mRNA_8852-protein|Name=jgi.p|Nanoce1779_2|673722|organism=Nannochloropsis oceanica|type=polypeptide|length=736bp
MFRSGRSKSRGKSLDATPTDLTSLETHLTEKTDLIDDIKKVLPITVQASG
IVAIGMQGAGKSTVLESLTGVPLSRASGLRRPVKVKIVCDPTCVKEYVLV
SGSDPLFKQNTKRLENAADLPAALVKLNEQMNVAGSFRPATGHFMEDKDE
ASDATIEEEERVYVEQPSRYMPDRHSESITESSAGLIYVRVVRPSGPTYT
IIDFPAFSCPPDAAQEAYLRRVLEEDEDPNKLILAVLSIKDVFDHADIIH
LAKRLDPASKRTIGVVTKAHLVTKDMGIVEKLQMNSNKPLVLPLGYVAVC
AADPNNSAANRQEVMQFEHAFFSSNPLLKGLRQERWGLASLKSLVLNYQK
NGITQRLPELSQAIRTEIEELSADLHQEQYHHQHAHQQKHMSKAQGHPVA
PAVVFDQFEDVFSRLCSEMTFVMFDVKELADNSSSRQDRKLNLGPRYQLA
VEGREAEARRALPSYTSAEVAEWLNKEMGEFRGVIANANYLMHPVFRKAI
RELVFPVLRVYARGVIQDMDDMLQYTAQELVGERFRPYTRLLEALMRDVT
QVQAAKKEEAERLVGRLLEAELNWNFVDEVDLAFISQQIEKNVAANERGE
SAGRMEADDMWDALGVEGGAGGGAGGEGGLGRSKSGKVFLQSSHSRELQV
MQCTLHYYVQLLLRRVFYAIPTNTRNVMINEFRHDLMSVVAAKYNDDIKL
RALMSEELWAEQSRQQRAMRKAALEEVMGRLDLLS*

mRNA from alignment at scaffold_29:14669..17462+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8852 ID=mRNA_8852|Name=jgi.p|Nanoce1779_2|673722|organism=Nannochloropsis oceanica|type=mRNA|length=2794bp|location=Sequence derived from alignment at scaffold_29:14669..17462+ (Nannochloropsis oceanica)
ACAGTATACACAGTCCATTGCAATCTCACCATGTTTCGCTCGGGCAGGTC
AAAGTCGCGGGGCAAGTCCCTCGACGCCACTCCCACGGACTTGACCAGCC
TGGAGACGCACTTGACGGAAAAGACGGATCTGATCGACGACATTAAAAAG
GTACTCCCCATTACCGTGCAAGCATCGGGCATCGTGGCCATCGGCATGCA
GGGCGCGGGCAAGTCCACCGTCCTCGAATCCCTGACTGGCGTGCCTTTGT
CACGGGCAAGCGGGCTGCGACGCCCTGTCAAGGTCAAGATTGTCTGCGAT
CCCACCTGCGTCAAGGAATATGTCCTCGTCAGTGGCAGTGACCCTCTATT
CAAGCAAAATACGAAGCGTCTGGAAAACGCGGCTGATTTGCCTGCGGCGC
TTGTCAAACTCAACGAGCAGATGAACGTGGCTGGAAGCTTCCGACCGGCT
ACAGGTCATTTTATGGAAGACAAAGATGAGGCCTCGGATGCCACCATCGA
GGAAGAGGAGAGAGTGTACGTTGAGCAACCATCACGCTACATGCCAGATC
GCCATAGCGAGTCGATCACCGAGAGTAGTGCTGGGTTGATATATGTGCGC
GTCGTGCGTCCCTCCGGCCCCACCTACACCATCATTGACTTCCCTGCTTT
CAGCTGTCCGCCCGACGCTGCACAAGAAGCTTATCTTCGCCGCGTTTTAG
AGGAAGATGAGGATCCCAACAAGCTCATTTTGGCCGTTCTGTCAATCAAG
GACGTGTTTGACCATGCTGACATCATCCATCTCGCCAAGCGCCTCGACCC
TGCTTCCAAGCGCACTATCGGGGTCGTGACCAAAGCACACCTGGTCACCA
AAGACATGGGGATCGTCGAAAAGCTGCAAATGAACAGCAACAAGCCCCTT
GTCCTTCCACTGGGTTATGTGGCCGTCTGTGCCGCGGACCCCAACAACTC
TGCGGCTAATCGACAGGAAGTTATGCAATTTGAACATGCCTTCTTCTCGT
CCAACCCCTTGCTGAAAGGTCTACGACAGGAGAGGTGGGGATTGGCCTCT
CTCAAGTCGTTGGTATTGAATTATCAGAAGAATGGTATCACACAGCGCCT
TCCAGAGCTGAGCCAGGCGATCCGAACAGAGATTGAGGAGTTGAGCGCAG
ACCTCCACCAGGAGCAGTACCATCACCAGCACGCGCACCAGCAGAAGCAC
ATGAGTAAGGCGCAAGGACATCCGGTGGCCCCTGCTGTTGTTTTTGATCA
GTTTGAGGACGTGTTTAGTAGGCTGTGTTCGGAGATGACCTTCGTTATGT
TTGATGTGAAGGAGTTGGCCGACAACAGTAGTTCGCGGCAAGACCGCAAG
CTTAATCTGGGGCCTCGATACCAACTTGCAGTGGAAGGGAGGGAGGCCGA
GGCCAGGAGGGCGTTGCCTAGCTATACATCTGCAGAGGTGGCTGAGTGGT
TGAATAAGGAGATGGGGGAGTTTAGGGGGGTGATTGCGAATGCGAATTAT
CTGATGCATCCTGTCTTTAGGAAGGCGATTCGTGAGTTGGTTTTCCCTGT
GTTGCGAGTGTATGCGAGGGGGGTGATCCAGGATATGGACGATATGCTTC
AGTACACGGCGCAGGAGCTGGTGGGGGAGAGGTTCAGGCCGTATACGCGG
CTGCTTGAGGCGTTGATGAGGGATGTGACGCAGGTACAGGCGGCGAAGAA
GGAAGAGGCAGAAAGGTTGGTGGGGAGGCTGTTAGAAGCGGAGCTGAATT
GGAATTTTGTCGATGAAGTGGATTTGGCGTTCATTTCACAACAAATTGAG
AAGAATGTGGCGGCCAACGAGAGAGGAGAGAGTGCGGGGAGGATGGAGGC
GGATGACATGTGGGATGCGCTCGGGGTGGAGGGGGGGGCTGGAGGGGGGG
CGGGGGGAGAGGGGGGGCTGGGGAGGAGCAAAAGTGGCAAGGTGTTTTTG
CAGTCGAGCCACTCGAGAGAGCTGCAGGTGATGCAGTGCACGCTTCATTA
CTATGTGCAGTTGCTACTGCGGCGTGTATTCTATGCGATTCCGACGAATA
CGAGGAACGTTATGATCAATGAGTTCAGGCATGATCTGATGTCTGTCGTG
GCGGCCAAGTATAACGACGATATCAAGCTCCGCGCGCTCATGTCTGAAGA
GCTGTGGGCCGAACAGAGCCGCCAGCAGCGCGCTATGCGCAAGGCAGCGT
TGGAGGAGGTGATGGGCAGGTTGGACTTGCTGTCGTAGGTTGAGTCGGAG
TTAAGTGTTGGCAGGGATTCTCAGGATTGCACCGTTGGTATGTATGTATA
CTTATTATCAACATAGATATTTTTATACAAGTAAGCCGACAGCAAGTCGA
TCGACGATGGCGCATGCGCATGGTTTATTTCGGACGTCGATTAGAGAGGT
TGTGCAAGCCTGTGCTGCGTGCGTATGTCACATGGCGGCGTCTTTGATAG
ATTTGATGAAGAAGTTCAATACGTTGTAAGAAAGCGAAGAAACAAAGAGG
AAAATGCGAGGTAAAGGATGCGAAACAGACAATGATGAAGAGGGGGAGGT
CATGACAAAGAGTGGCATACAGCGGCAGACAGAAACAGACAGAGACAATG
TCAAAGCGGATGCAATGAAAAAGGGAGGCAGACAGGGATAGAAAGACGAT
TTATCCCCAAACGGATGATGAAGTAAAAAACAACAAGACGGCCTTCAAGA
GGGAAGAGACAGGATATATAACATGCACACACCAACTGGAAGAAGAATGT
AAACTATTATGCACCCTTACAACTGCCGACCGCGTATATAGTGT

Coding sequence (CDS) from alignment at scaffold_29:14669..17462+

>mRNA_8852 ID=mRNA_8852|Name=jgi.p|Nanoce1779_2|673722|organism=Nannochloropsis oceanica|type=CDS|length=2208bp|location=Sequence derived from alignment at scaffold_29:14669..17462+ (Nannochloropsis oceanica)
ATGTTTCGCTCGGGCAGGTCAAAGTCGCGGGGCAAGTCCCTCGACGCCAC
TCCCACGGACTTGACCAGCCTGGAGACGCACTTGACGGAAAAGACGGATC
TGATCGACGACATTAAAAAGGTACTCCCCATTACCGTGCAAGCATCGGGC
ATCGTGGCCATCGGCATGCAGGGCGCGGGCAAGTCCACCGTCCTCGAATC
CCTGACTGGCGTGCCTTTGTCACGGGCAAGCGGGCTGCGACGCCCTGTCA
AGGTCAAGATTGTCTGCGATCCCACCTGCGTCAAGGAATATGTCCTCGTC
AGTGGCAGTGACCCTCTATTCAAGCAAAATACGAAGCGTCTGGAAAACGC
GGCTGATTTGCCTGCGGCGCTTGTCAAACTCAACGAGCAGATGAACGTGG
CTGGAAGCTTCCGACCGGCTACAGGTCATTTTATGGAAGACAAAGATGAG
GCCTCGGATGCCACCATCGAGGAAGAGGAGAGAGTGTACGTTGAGCAACC
ATCACGCTACATGCCAGATCGCCATAGCGAGTCGATCACCGAGAGTAGTG
CTGGGTTGATATATGTGCGCGTCGTGCGTCCCTCCGGCCCCACCTACACC
ATCATTGACTTCCCTGCTTTCAGCTGTCCGCCCGACGCTGCACAAGAAGC
TTATCTTCGCCGCGTTTTAGAGGAAGATGAGGATCCCAACAAGCTCATTT
TGGCCGTTCTGTCAATCAAGGACGTGTTTGACCATGCTGACATCATCCAT
CTCGCCAAGCGCCTCGACCCTGCTTCCAAGCGCACTATCGGGGTCGTGAC
CAAAGCACACCTGGTCACCAAAGACATGGGGATCGTCGAAAAGCTGCAAA
TGAACAGCAACAAGCCCCTTGTCCTTCCACTGGGTTATGTGGCCGTCTGT
GCCGCGGACCCCAACAACTCTGCGGCTAATCGACAGGAAGTTATGCAATT
TGAACATGCCTTCTTCTCGTCCAACCCCTTGCTGAAAGGTCTACGACAGG
AGAGGTGGGGATTGGCCTCTCTCAAGTCGTTGGTATTGAATTATCAGAAG
AATGGTATCACACAGCGCCTTCCAGAGCTGAGCCAGGCGATCCGAACAGA
GATTGAGGAGTTGAGCGCAGACCTCCACCAGGAGCAGTACCATCACCAGC
ACGCGCACCAGCAGAAGCACATGAGTAAGGCGCAAGGACATCCGGTGGCC
CCTGCTGTTGTTTTTGATCAGTTTGAGGACGTGTTTAGTAGGCTGTGTTC
GGAGATGACCTTCGTTATGTTTGATGTGAAGGAGTTGGCCGACAACAGTA
GTTCGCGGCAAGACCGCAAGCTTAATCTGGGGCCTCGATACCAACTTGCA
GTGGAAGGGAGGGAGGCCGAGGCCAGGAGGGCGTTGCCTAGCTATACATC
TGCAGAGGTGGCTGAGTGGTTGAATAAGGAGATGGGGGAGTTTAGGGGGG
TGATTGCGAATGCGAATTATCTGATGCATCCTGTCTTTAGGAAGGCGATT
CGTGAGTTGGTTTTCCCTGTGTTGCGAGTGTATGCGAGGGGGGTGATCCA
GGATATGGACGATATGCTTCAGTACACGGCGCAGGAGCTGGTGGGGGAGA
GGTTCAGGCCGTATACGCGGCTGCTTGAGGCGTTGATGAGGGATGTGACG
CAGGTACAGGCGGCGAAGAAGGAAGAGGCAGAAAGGTTGGTGGGGAGGCT
GTTAGAAGCGGAGCTGAATTGGAATTTTGTCGATGAAGTGGATTTGGCGT
TCATTTCACAACAAATTGAGAAGAATGTGGCGGCCAACGAGAGAGGAGAG
AGTGCGGGGAGGATGGAGGCGGATGACATGTGGGATGCGCTCGGGGTGGA
GGGGGGGGCTGGAGGGGGGGCGGGGGGAGAGGGGGGGCTGGGGAGGAGCA
AAAGTGGCAAGGTGTTTTTGCAGTCGAGCCACTCGAGAGAGCTGCAGGTG
ATGCAGTGCACGCTTCATTACTATGTGCAGTTGCTACTGCGGCGTGTATT
CTATGCGATTCCGACGAATACGAGGAACGTTATGATCAATGAGTTCAGGC
ATGATCTGATGTCTGTCGTGGCGGCCAAGTATAACGACGATATCAAGCTC
CGCGCGCTCATGTCTGAAGAGCTGTGGGCCGAACAGAGCCGCCAGCAGCG
CGCTATGCGCAAGGCAGCGTTGGAGGAGGTGATGGGCAGGTTGGACTTGC
TGTCGTAG

Synonyms

Publications