jgi.p|Nanoce1779_2|223118, mRNA_8851 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|223118
Unique Name	mRNA_8851
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2052
Alignment location	scaffold_29:10816..12946 +

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Properties


Property Name	Value
TranscriptId	223204
Track	FilteredModels2
ProteinId	223118

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_29	supercontig	scaffold_29:10816..12946 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|223118	gene_8851	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|223118	mRNA_8851-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8851	CDS_8851	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_29:10816..12946+
coding sequence from alignment at scaffold_29:10816..12946+

mRNA sequence

>mRNA_8851 ID=mRNA_8851|Name=jgi.p|Nanoce1779_2|223118|organism=Nannochloropsis oceanica|type=mRNA|length=2052bp
GTTCTATTTGCTTCCGAGGGACGGGGACTGGTGTGGGTATATTGGCCGAC
GTCTGCAATACGCGCTCTCACTCGTACCCACACACACCACCCCAGCCACA
AGCCACACAGCCGACAAGAATGTCGACGTACGACAGCTCGTTCTCTGCCG
CTGACCGTGCCGCCATACCACTGACCCCAACTCTGCTGCTCCCACACACC
TCCACAGTATACACAGTCCATTGCAATCTCACCATGTTTCGCTCGGGCAG
GTCAAAGTCGCGGGGCAAGTCCCTCGACGCCACTCCCACGGACTTGACCA
GCCTGGAGACGCACTTGACGGAAAAGACGGATCTGATCGACGACATTAAA
AAGGTACTCCCCATTACCGTGCAAGCATCGGGCGTCGTGGCCATCGGCAT
GCAGGGCGCGGGCAAGTCCACCGTCCTCGAATCCCTGACTGGCGTGCCTT
TGTCACGGGCAAGCGGGCTGCGACGCCCTGTCAAGGTCAAGATTGTCTGC
GATCCCACCTGCGTCAAGGAATATGTCCTCGTCAGTGGCAGTGACCCTCT
ATTCAAGCAAAATACGAAGCGTCTGGAAAACGCGGCTGATTTGCCTGCGG
CGCTTGTCAAACTCAACGAGCAGATGAACGTGGCTGGAAGCTTCCGACCG
GCTACAGGTCATTTTATGGAAGACAAAGATGAGGCCTCGGATGCCACCAT
CGAGGAAGAGGAGAGAGTGTACGTTGAGCAACCATCACGCTACATGCCAG
ATCGCCATAGCGAGTCGATCACCGAGAGTAGTGCTGGGTTGATATATGTG
CGCGTCGTGCGTCCCTCCGGCCCCACCTACACCATCATTGACTTCCCTGC
TTTCAGCTGTCCGCCCGACGCTGCACAAGAAGCTTATCTTCGCCGCGTTT
TAGAGGAAGATGAGGATCCCAACAAGCTCATTTTGGCCGTTCTGTCAATC
AAGGACGTGTTTGACCATGCTGACATCATCCATCTCGCCAAGCGCCTCGA
CCCTGCTTCCAAGCGCACTATCGGGGTCGTGACCAAAGCACACCTGGTCA
CCAAAGACATGGGGATCGTCGAAAAGCTGCAAATGAACAGCAACAAGCCC
CTTGTCCTTCCACTGGGTTATGTGGCCGTCTGTGCCGCGGACCCCAACAA
CTCTGCGGCTAATCGACAGGAAGTTATGCAATTTGAACATGCCTTCTTCT
CGTCCAACCCCTTGCTGAAAGGTCTACGACAGGAGAGGTGGGGATTGGCC
TCTCTCAAGTCGTTGGTATTGAATTATCAGAAGAATGGTATCACACAGCG
CCTTCCAGAGCTGAGCCAGGCGATCCGAACAGAGATTGAGGAGTTGAGCG
CAGACCTCCACCAGGAGCAGTACCATCACCAGCACGCGCACCAGCAGAAG
CACATGAGTAAGGCGCAAGGACATCCGGTGGCCCCTGCTGTTGTTTTTGA
TCAGTTTGAGGACGTGTTTAGTAGGCTGTGTTCGGAGATGACCTTCGTTA
TGTTTGATGTGAAGGAGTTGGCCGACAACAGTAGTTCGCGGCAAGACCGC
AAGCTTAATCTGGGGCCTCGATACCAACTTGCAGTGGAAGGGAGGGAGGC
CGAGGCCAGGAGGGCGTTGCCTAGCTATACATCTGCAGAGGTGGCTGAGT
GGTTGAATAAGGAGATGGGGGAGTTTAGGGGGGTGATTGCGAATGCGAAT
TATCTGATGCATCCTGTCTTTAGGAAGGCGATTCGTGAGTTGGTTTTCCC
TGTGTTGCGAGTGTATGCGAGGGGGGTGATCCAGGATATGGACGATATGC
TTCAGTACACGGCGCAGGAGCTGGTGGGGGAGAGGTTCAGGCCGTATACG
CGGCTGCTTGAGGCGTTGATGAGGGATGTGACGCAGGTACAGGCGGCGAA
GAAGGAAGAGGCTGTTAGAAGCGGAGCTGAATTGGAATTTTGTCGATGAA
GTGGATTTGGCGTTCATTTCACAACAAATTGAGAAGAATGTGGCGGCCAA
CGAGAGAGGAGAGAGTGCGGGGAGGATGGAGGCGGATGACATGTGGGATG
AG

protein sequence of jgi.p|Nanoce1779_2|223118

>mRNA_8851-protein ID=mRNA_8851-protein|Name=jgi.p|Nanoce1779_2|223118|organism=Nannochloropsis oceanica|type=polypeptide|length=610bp
MSTYDSSFSAADRAAIPLTPTLLLPHTSTVYTVHCNLTMFRSGRSKSRGK
SLDATPTDLTSLETHLTEKTDLIDDIKKVLPITVQASGVVAIGMQGAGKS
TVLESLTGVPLSRASGLRRPVKVKIVCDPTCVKEYVLVSGSDPLFKQNTK
RLENAADLPAALVKLNEQMNVAGSFRPATGHFMEDKDEASDATIEEEERV
YVEQPSRYMPDRHSESITESSAGLIYVRVVRPSGPTYTIIDFPAFSCPPD
AAQEAYLRRVLEEDEDPNKLILAVLSIKDVFDHADIIHLAKRLDPASKRT
IGVVTKAHLVTKDMGIVEKLQMNSNKPLVLPLGYVAVCAADPNNSAANRQ
EVMQFEHAFFSSNPLLKGLRQERWGLASLKSLVLNYQKNGITQRLPELSQ
AIRTEIEELSADLHQEQYHHQHAHQQKHMSKAQGHPVAPAVVFDQFEDVF
SRLCSEMTFVMFDVKELADNSSSRQDRKLNLGPRYQLAVEGREAEARRAL
PSYTSAEVAEWLNKEMGEFRGVIANANYLMHPVFRKAIRELVFPVLRVYA
RGVIQDMDDMLQYTAQELVGERFRPYTRLLEALMRDVTQVQAAKKEEAVR
SGAELEFCR*

mRNA from alignment at scaffold_29:10816..12946+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8851 ID=mRNA_8851|Name=jgi.p|Nanoce1779_2|223118|organism=Nannochloropsis oceanica|type=mRNA|length=2131bp|location=Sequence derived from alignment at scaffold_29:10816..12946+ (Nannochloropsis oceanica)
GTTCTATTTGCTTCCGAGGGACGGGGACTGGTGTGGGTATATTGGCCGAC
GTCTGCAATACGCGCTCTCACTCGTACCCACACACACCACCCCAGCCACA
AGCCACACAGCCGACAAGAATGTCGACGTACGACAGCTCGTTCTCTGCCG
CTGACCGTGCCGCCATACCACTGACCCCAACTCTGCTGCTCCCACACACC
TCCACAGTATACACAGTCCATTGCAATCTCACCATGTTTCGCTCGGGCAG
GTCAAAGTCGCGGGGCAAGTCCCTCGACGCCACTCCCACGGACTTGACCA
GCCTGGAGACGCACTTGACGGAAAAGACGGATCTGATCGACGACATTAAA
AAGGTACTCCCCATTACCGTGCAAGCATCGGGCGTCGTGGCCATCGGCAT
GCAGGGCGCGGGCAAGTCCACCGTCCTCGAATCCCTGACTGGCGTGCCTT
TGTCACGGGCAAGCGGGCTGCGACGCCCTGTCAAGGTCAAGATTGTCTGC
GATCCCACCTGCGTCAAGGAATATGTCCTCGTCAGTGGCAGTGACCCTCT
ATTCAAGCAAAATACGAAGCGTCTGGAAAACGCGGCTGATTTGCCTGCGG
CGCTTGTCAAACTCAACGAGCAGATGAACGTGGCTGGAAGCTTCCGACCG
GCTACAGGTCATTTTATGGAAGACAAAGATGAGGCCTCGGATGCCACCAT
CGAGGAAGAGGAGAGAGTGTACGTTGAGCAACCATCACGCTACATGCCAG
ATCGCCATAGCGAGTCGATCACCGAGAGTAGTGCTGGGTTGATATATGTG
CGCGTCGTGCGTCCCTCCGGCCCCACCTACACCATCATTGACTTCCCTGC
TTTCAGCTGTCCGCCCGACGCTGCACAAGAAGCTTATCTTCGCCGCGTTT
TAGAGGAAGATGAGGATCCCAACAAGCTCATTTTGGCCGTTCTGTCAATC
AAGGACGTGTTTGACCATGCTGACATCATCCATCTCGCCAAGCGCCTCGA
CCCTGCTTCCAAGCGCACTATCGGGGTCGTGACCAAAGCACACCTGGTCA
CCAAAGACATGGGGATCGTCGAAAAGCTGCAAATGAACAGCAACAAGCCC
CTTGTCCTTCCACTGGGTTATGTGGCCGTCTGTGCCGCGGACCCCAACAA
CTCTGCGGCTAATCGACAGGAAGTTATGCAATTTGAACATGCCTTCTTCT
CGTCCAACCCCTTGCTGAAAGGTCTACGACAGGAGAGGTGGGGATTGGCC
TCTCTCAAGTCGTTGGTATTGAATTATCAGAAGAATGGTATCACACAGCG
CCTTCCAGAGCTGAGCCAGGCGATCCGAACAGAGATTGAGGAGTTGAGCG
CAGACCTCCACCAGGAGCAGTACCATCACCAGCACGCGCACCAGCAGAAG
CACATGAGTAAGGCGCAAGGACATCCGGTGGCCCCTGCTGTTGTTTTTGA
TCAGTTTGAGGACGTGTTTAGTAGGCTGTGTTCGGAGATGACCTTCGTTA
TGTTTGATGTGAAGGAGTTGGCCGACAACAGTAGTTCGCGGCAAGACCGC
AAGCTTAATCTGGGGCCTCGATACCAACTTGCAGTGGAAGGGAGGGAGGC
CGAGGCCAGGAGGGCGTTGCCTAGCTATACATCTGCAGAGGTGGCTGAGT
GGTTGAATAAGGAGATGGGGGAGTTTAGGGGGGTGATTGCGAATGCGAAT
TATCTGATGCATCCTGTCTTTAGGAAGGCGATTCGTGAGTTGGTTTTCCC
TGTGTTGCGAGTGTATGCGAGGGGGGTGATCCAGGATATGGACGATATGC
TTCAGTACACGGCGCAGGAGCTGGTGGGGGAGAGGTTCAGGCCGTATACG
CGGCTGCTTGAGGCGTTGATGAGGGATGTGACGCAGGTACAGGCGGCGAA
GAAGGAAGAGGCAGAAAGGTTGGTGGGGAGGCTGTTAGAAGCGGAGCTGA
ATTGGAATTTTGTCGATGAAGTGGATTTGGCGTTCATTTCACAACAAATT
GAGAAGAATGTGGCGGCCAACGAGAGAGGAGAGAGTGCGGGGAGGATGGA
GGCGGATGACATGTGGGATGCGCTCGGGGTGGAGGGGGGGGCTGGAGGGG
GGGCGGGGGGAGAGGGGGGGCTGGGGAGGAG

Coding sequence (CDS) from alignment at scaffold_29:10816..12946+

>mRNA_8851 ID=mRNA_8851|Name=jgi.p|Nanoce1779_2|223118|organism=Nannochloropsis oceanica|type=CDS|length=3660bp|location=Sequence derived from alignment at scaffold_29:10816..12946+ (Nannochloropsis oceanica)
ATGTCGACGTACGACAGCTCGTTCTCTGCCGCTGACCGTGCCGCCATACC
ACTGACCCCAACTCTGCTGCTCCCACACACCTCCACAGTATACACAGTCC
ATTGCAATCTCACCATGTTTCGCTCGGGCAGGTCAAAGTCGCGGGGCAAG
TCCCTCGACGCCACTCCCACGGACTTGACCAGCCTGGAGACGCACTTGAC
GGAAAAGACGGATCTGATCGACGACATTAAAAAGGTACTCCCCATTACCG
TGCAAGCATCGGGCGTCGTGGCCATCGGCATGCAGGGCGCGGGCAAGTCC
ACCGTCCTCGAATCCCTGACTGGCGTGCCTTTGTCACGGGCAAGCGGGCT
GCGACGCCCTGTCAAGGTCAAGATTGTCTGCGATCCCACCTGCGTCAAGG
AATATGTCCTCGTCAGTGGCAGTGACCCTCTATTCAAGCAAAATACGAAG
CGTCTGGAAAACGCGGCTGATTTGCCTGCGGCGCTTGTCAAACTCAACGA
GCAGATGAACGTGGCTGGAAGCTTCCGACCGGCTACAGGTCATTTTATGG
AAGACAAAGATGAGGCCTCGGATGCCACCATCGAGGAAGAGGAGAGAGTG
TACGTTGAGCAACCATCACGCTACATGCCAGATCGCCATAGCGAGTCGAT
CACCGAGAGTAGTGCTGGGTTGATATATGTGCGCGTCGTGCGTCCCTCCG
GCCCCACCTACACCATCATTGACTTCCCTGCTTTCAGCTGTCCGCCCGAC
GCTGCACAAGAAGCTTATCTTCGCCGCGTTTTAGAGGAAGATGAGGATCC
CAACAAGCTCATTTTGGCCGTTCTGTCAATCAAGGACGTGTTTGACCATG
CTGACATCATCCATCTCGCCAAGCGCCTCGACCCTGCTTCCAAGCGCACT
ATCGGGGTCGTGACCAAAGCACACCTGGTCACCAAAGACATGGGGATCGT
CGAAAAGCTGCAAATGAACAGCAACAAGCCCCTTGTCCTTCCACTGGGTT
ATGTGGCCGTCTGTGCCGCGGACCCCAACAACTCTGCGGCTAATCGACAG
GAAGTTATGCAATTTGAACATGCCTTCTTCTCGTCCAACCCCTTGCTGAA
AGGTCTACGACAGGAGAGGTGGGGATTGGCCTCTCTCAAGTCGTTGGTAT
TGAATTATCAGAAGAATGGTATCACACAGCGCCTTCCAGAGCTGAGCCAG
GCGATCCGAACAGAGATTGAGGAGTTGAGCGCAGACCTCCACCAGGAGCA
GTACCATCACCAGCACGCGCACCAGCAGAAGCACATGAGTAAGGCGCAAG
GACATCCGGTGGCCCCTGCTGTTGTTTTTGATCAGTTTGAGGACGTGTTT
AGTAGGCTGTGTTCGGAGATGACCTTCGTTATGTTTGATGTGAAGGAGTT
GGCCGACAACAGTAGTTCGCGGCAAGACCGCAAGCTTAATCTGGGGCCTC
GATACCAACTTGCAGTGGAAGGGAGGGAGGCCGAGGCCAGGAGGGCGTTG
CCTAGCTATACATCTGCAGAGGTGGCTGAGTGGTTGAATAAGGAGATGGG
GGAGTTTAGGGGGGTGATTGCGAATGCGAATTATCTGATGCATCCTGTCT
TTAGGAAGGCGATTCGTGAGTTGGTTTTCCCTGTGTTGCGAGTGTATGCG
AGGGGGGTGATCCAGGATATGGACGATATGCTTCAGTACACGGCGCAGGA
GCTGGTGGGGGAGAGGTTCAGGCCGTATACGCGGCTGCTTGAGGCGTTGA
TGAGGGATGTGACGCAGGTACAGGCGGCGAAGAAGGAAGAGGCTGTTAGA
AGCGGAGCTGAATTGGAATTTTGTCGATGAATGTCGACGTACGACAGCTC
GTTCTCTGCCGCTGACCGTGCCGCCATACCACTGACCCCAACTCTGCTGC
TCCCACACACCTCCACAGTATACACAGTCCATTGCAATCTCACCATGTTT
CGCTCGGGCAGGTCAAAGTCGCGGGGCAAGTCCCTCGACGCCACTCCCAC
GGACTTGACCAGCCTGGAGACGCACTTGACGGAAAAGACGGATCTGATCG
ACGACATTAAAAAGGTACTCCCCATTACCGTGCAAGCATCGGGCGTCGTG
GCCATCGGCATGCAGGGCGCGGGCAAGTCCACCGTCCTCGAATCCCTGAC
TGGCGTGCCTTTGTCACGGGCAAGCGGGCTGCGACGCCCTGTCAAGGTCA
AGATTGTCTGCGATCCCACCTGCGTCAAGGAATATGTCCTCGTCAGTGGC
AGTGACCCTCTATTCAAGCAAAATACGAAGCGTCTGGAAAACGCGGCTGA
TTTGCCTGCGGCGCTTGTCAAACTCAACGAGCAGATGAACGTGGCTGGAA
GCTTCCGACCGGCTACAGGTCATTTTATGGAAGACAAAGATGAGGCCTCG
GATGCCACCATCGAGGAAGAGGAGAGAGTGTACGTTGAGCAACCATCACG
CTACATGCCAGATCGCCATAGCGAGTCGATCACCGAGAGTAGTGCTGGGT
TGATATATGTGCGCGTCGTGCGTCCCTCCGGCCCCACCTACACCATCATT
GACTTCCCTGCTTTCAGCTGTCCGCCCGACGCTGCACAAGAAGCTTATCT
TCGCCGCGTTTTAGAGGAAGATGAGGATCCCAACAAGCTCATTTTGGCCG
TTCTGTCAATCAAGGACGTGTTTGACCATGCTGACATCATCCATCTCGCC
AAGCGCCTCGACCCTGCTTCCAAGCGCACTATCGGGGTCGTGACCAAAGC
ACACCTGGTCACCAAAGACATGGGGATCGTCGAAAAGCTGCAAATGAACA
GCAACAAGCCCCTTGTCCTTCCACTGGGTTATGTGGCCGTCTGTGCCGCG
GACCCCAACAACTCTGCGGCTAATCGACAGGAAGTTATGCAATTTGAACA
TGCCTTCTTCTCGTCCAACCCCTTGCTGAAAGGTCTACGACAGGAGAGGT
GGGGATTGGCCTCTCTCAAGTCGTTGGTATTGAATTATCAGAAGAATGGT
ATCACACAGCGCCTTCCAGAGCTGAGCCAGGCGATCCGAACAGAGATTGA
GGAGTTGAGCGCAGACCTCCACCAGGAGCAGTACCATCACCAGCACGCGC
ACCAGCAGAAGCACATGAGTAAGGCGCAAGGACATCCGGTGGCCCCTGCT
GTTGTTTTTGATCAGTTTGAGGACGTGTTTAGTAGGCTGTGTTCGGAGAT
GACCTTCGTTATGTTTGATGTGAAGGAGTTGGCCGACAACAGTAGTTCGC
GGCAAGACCGCAAGCTTAATCTGGGGCCTCGATACCAACTTGCAGTGGAA
GGGAGGGAGGCCGAGGCCAGGAGGGCGTTGCCTAGCTATACATCTGCAGA
GGTGGCTGAGTGGTTGAATAAGGAGATGGGGGAGTTTAGGGGGGTGATTG
CGAATGCGAATTATCTGATGCATCCTGTCTTTAGGAAGGCGATTCGTGAG
TTGGTTTTCCCTGTGTTGCGAGTGTATGCGAGGGGGGTGATCCAGGATAT
GGACGATATGCTTCAGTACACGGCGCAGGAGCTGGTGGGGGAGAGGTTCA
GGCCGTATACGCGGCTGCTTGAGGCGTTGATGAGGGATGTGACGCAGGTA
CAGGCGGCGAAGAAGGAAGAGGCTGTTAGAAGCGGAGCTGAATTGGAATT
TTGTCGATGA

Synonyms

Publications