jgi.p|Nanoce1779_2|574513, mRNA_885 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|574513
Unique NamemRNA_885
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length455
Alignment locationscaffold_2:659512..659966 +

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Properties
Property NameValue
TranscriptId574599
TrackFilteredModels2
ProteinId574513
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:659512..659966 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|574513gene_885Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|574513mRNA_885-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_885CDS_885Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_885 ID=mRNA_885|Name=jgi.p|Nanoce1779_2|574513|organism=Nannochloropsis oceanica|type=mRNA|length=455bp
GGGGGAGGGTAAATGCTGTTGATTTTGAGAACCACGGGAGGAGGGGGGAA
GGGATGGAATATGACATGGAGGGATTATTCCATCCCTTTTCTCCTCGTCT
TCGTGTGTGTATACAGTGGACGGCGGTGTCAGTTTCCATTTTTTGGCCTC
CTTCCATTTCCTCCTCCTTTTACCGCGTATCGACGTCCCTTGTCCCATGT
TCTTCTCCTTGCTTTACCCCGTATTAGTGGATGCAGGCAGCTGCAGAGGA
AGGACGGTATGTACAGATCATTTTGAGAAACACGCGATCAGAAAAGGAAG
AGGAAAGGGAGGGGAGGGAAAGAAACAACAAACCCAAAAAGAGAAGGAAA
GAAAAGTCACGTTTGTTGAGTAGGAGAGAGAGAAAGATAGAAGGAGAGTA
AGATAAATTCAAAGGCCGGCAAATAAATTCAGAGACGCACGGCGGAGGGC
AGGGA
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protein sequence of jgi.p|Nanoce1779_2|574513

>mRNA_885-protein ID=mRNA_885-protein|Name=jgi.p|Nanoce1779_2|574513|organism=Nannochloropsis oceanica|type=polypeptide|length=72bp
MTWRDYSIPFLLVFVCVYSGRRCQFPFFGLLPFPPPFTAYRRPLSHVLLL
ALPRISGCRQLQRKDGMYRSF*
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mRNA from alignment at scaffold_2:659512..659966+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_885 ID=mRNA_885|Name=jgi.p|Nanoce1779_2|574513|organism=Nannochloropsis oceanica|type=mRNA|length=455bp|location=Sequence derived from alignment at scaffold_2:659512..659966+ (Nannochloropsis oceanica)
GGGGGAGGGTAAATGCTGTTGATTTTGAGAACCACGGGAGGAGGGGGGAA
GGGATGGAATATGACATGGAGGGATTATTCCATCCCTTTTCTCCTCGTCT
TCGTGTGTGTATACAGTGGACGGCGGTGTCAGTTTCCATTTTTTGGCCTC
CTTCCATTTCCTCCTCCTTTTACCGCGTATCGACGTCCCTTGTCCCATGT
TCTTCTCCTTGCTTTACCCCGTATTAGTGGATGCAGGCAGCTGCAGAGGA
AGGACGGTATGTACAGATCATTTTGAGAAACACGCGATCAGAAAAGGAAG
AGGAAAGGGAGGGGAGGGAAAGAAACAACAAACCCAAAAAGAGAAGGAAA
GAAAAGTCACGTTTGTTGAGTAGGAGAGAGAGAAAGATAGAAGGAGAGTA
AGATAAATTCAAAGGCCGGCAAATAAATTCAGAGACGCACGGCGGAGGGC
AGGGA
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Coding sequence (CDS) from alignment at scaffold_2:659512..659966+

>mRNA_885 ID=mRNA_885|Name=jgi.p|Nanoce1779_2|574513|organism=Nannochloropsis oceanica|type=CDS|length=216bp|location=Sequence derived from alignment at scaffold_2:659512..659966+ (Nannochloropsis oceanica)
ATGACATGGAGGGATTATTCCATCCCTTTTCTCCTCGTCTTCGTGTGTGT
ATACAGTGGACGGCGGTGTCAGTTTCCATTTTTTGGCCTCCTTCCATTTC
CTCCTCCTTTTACCGCGTATCGACGTCCCTTGTCCCATGTTCTTCTCCTT
GCTTTACCCCGTATTAGTGGATGCAGGCAGCTGCAGAGGAAGGACGGTAT
GTACAGATCATTTTGA
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Synonyms
Publications