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Properties
| Property Name | Value |
|---|
| TranscriptId | 604318 |
| Track | FilteredModels2 |
| ProteinId | 604232 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_29 | supercontig | scaffold_29:541..2866 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_8848 ID=mRNA_8848|Name=jgi.p|Nanoce1779_2|604232|organism=Nannochloropsis oceanica|type=mRNA|length=2224bp
CAGCCACAAGCCACAAAGCAGTCTAAGAATCCAGCTACACACCGAGAGAT
GGCATCGGTACTGTCGGCAGAGACAAAGGGTGCCGTCTCTCTCCGGCGGC
TTTCCTGGGGCAGTCAATCGGGCAAAGATGCCTTCGATACTAGCGGGCGC
GAACGTAAGGGCTCCGTCGACACGGCAATGGGATGGGAACTTGACGCCAA
GACAGACTTCATCGACGACCTCTCCATCCTCTGGCCTCTTAACAAACAAG
TCAAAGCCCCGGGAATCATCGTCATGGGTGCCCACGGTGCCGGCAAATCT
TCGATCCTGCATGCCTTGACAGGGATGCCTTTCCCGCATTCCTCTGCCTC
GGACAGCACTAGGCGCCCCATCAAGATGCAGATCTCCTCCGATCCCACCA
CCGAGGCAACCTACGCCCTGGTCAGCACCGTCGATCCTGCTTGCTCCCCG
GACAAGACCAGCACCCAGCGTGTCTCTAAGCTGGAGGACCTGTCCCGTGT
GCTCGCCAAATTGAACGGAGACACAGAGAGGCGGATTGGGGAAGAGGAGA
GGGGACAGGCGATCTATGTCAAGGTGGTACGGCCTTCGGGAACGGCGTAT
ACGGTGGTGGATTTGCCGGGAGTGGATGAAAAAGATCCGGAATCCGTCCG
TGTGGCGGAGGAGTTTATGCGTGATGAACCCAACAGCCTGATTTTGGTGG
TACTGCCCTTGGTAGATGTGTTTGAGCGGGCGTTTCCCATGGCGTTGGCC
AAGAGGGTTGACCCGGAGAGTCGGCGAACCATCGGGGTGGTGACCAAGAC
AGACCTTGTTCAAAAAGAGATGGAGGCAGTGGAGAAGCTTCAAATGACCA
GCCATACAGGCGTAAGTCTTCCTTTAGGGTATATTGCTGTGCGTTTGGCC
AACGAGAAGGAGAAGCATAAGACTCGCAAGCAATTATTGGAGAAGGAGCA
TGCCCTTTTCACGACCAACCCGTTGCTGGCAGGCTTGAGGCCGGAAAGAT
GGGGCTCGGTGACATTGAAGAAATTAATTGTGGATTACCAGTGCAATGCC
ATCGGGCACCTTGTTCCGGATGTCTGTCGTCGGCTGCATGCAGAGCTACG
GGAGCTGGAGAAAGAGGAGGAGGAGGAGGCTGCGGCAGAGCCGGAAGGGA
AGAAGGGGATGGGAGGAAAGCTGCTGTCCGACCATCAAGAATTCTTCAGG
AAGCTTTGCACGGATGCGAATAGCCTGGGTTTTGAAATTGGGGAGTTGGC
TCTGAGCAGTGACACCCGGAAGGATCGACAGCTCAACTTAGGTGCCCGTC
TGACAGGTGCGATCAAAAAGCATGAAGAGGAGGCGCGGAGAGCCTTGCCG
GCAGCTGTTGCAGGCAAGGTGGGCCCTTGGTTGAACCCGTCAGAGGGGGA
GGTAGAAGGGACGACTACTGAGCCGCGGGTATATGTGAGCCGGGAGACGA
TGTCGCATGATTTGTTTCGGAAGTCGGTGAGGGAGGTGTGCGGCCCTGTG
CTGCGTGCGTATGCCACTGCCCTGCTTGGAGAGGCGACCCTGCAGTTGAA
GGAAGTGACGCATGTGCTGGTGCAGGAGAAATTCCAGGAGTTCCCGTGGT
TGGTCGAGAGTGTGAAGCATGAGATTAACTTGCTCTTGCAGAAGAAGAAA
GGGGAAGCAGAGAGGGTGCTTGGTCGGATTGTGGCCTCCGAGATGAACTG
GTGCTTCTTGAATGAGGCGGATCTGAATGCCGTCGAACGAGAAGTAGCTC
TTAATATGGCGGGTAAGTCCGGGGGGGGGCTGGGGTTTGGAAAGGTGGCG
CCGTCGGGAGAGCAGCCAAATCAACAGTTGCACTGGTCGGCGGAGATGTC
GGAGGTGCTGAGTCCGAGTGAGCGAGACGTGGGAAGAAATGGTTTGAGTC
GAGTTGACTCGACGAGGGATACGCGTATGCGGGAGTTGGCGTTGGATGCC
TATGTGCGCTTGTTGTTGCGACGGGTGTTTTACGCAATTCCTATGAACAT
TCGAAACGTGATTTTGAATGAGTTTAGGCGTGATTTGGTGTCCATGGTGG
CGGAGAAATATAACGATGAAACGAAGCTTCGTACGGTCATGTCGGAGGAG
TTGTGGAAGATCCAACAGCGACAGCAAAGGGTGGAACGAAAGGCGTCTTT
GACAGATTTGATGAAGAAGTTGGACATGTTGTAAGGGAGCGATAACGCTA
GAAGAGAGAAACAGACAGAGACAA back to topprotein sequence of jgi.p|Nanoce1779_2|604232 >mRNA_8848-protein ID=mRNA_8848-protein|Name=jgi.p|Nanoce1779_2|604232|organism=Nannochloropsis oceanica|type=polypeptide|length=712bp
MASVLSAETKGAVSLRRLSWGSQSGKDAFDTSGRERKGSVDTAMGWELDA
KTDFIDDLSILWPLNKQVKAPGIIVMGAHGAGKSSILHALTGMPFPHSSA
SDSTRRPIKMQISSDPTTEATYALVSTVDPACSPDKTSTQRVSKLEDLSR
VLAKLNGDTERRIGEEERGQAIYVKVVRPSGTAYTVVDLPGVDEKDPESV
RVAEEFMRDEPNSLILVVLPLVDVFERAFPMALAKRVDPESRRTIGVVTK
TDLVQKEMEAVEKLQMTSHTGVSLPLGYIAVRLANEKEKHKTRKQLLEKE
HALFTTNPLLAGLRPERWGSVTLKKLIVDYQCNAIGHLVPDVCRRLHAEL
RELEKEEEEEAAAEPEGKKGMGGKLLSDHQEFFRKLCTDANSLGFEIGEL
ALSSDTRKDRQLNLGARLTGAIKKHEEEARRALPAAVAGKVGPWLNPSEG
EVEGTTTEPRVYVSRETMSHDLFRKSVREVCGPVLRAYATALLGEATLQL
KEVTHVLVQEKFQEFPWLVESVKHEINLLLQKKKGEAERVLGRIVASEMN
WCFLNEADLNAVEREVALNMAGKSGGGLGFGKVAPSGEQPNQQLHWSAEM
SEVLSPSERDVGRNGLSRVDSTRDTRMRELALDAYVRLLLRRVFYAIPMN
IRNVILNEFRRDLVSMVAEKYNDETKLRTVMSEELWKIQQRQQRVERKAS
LTDLMKKLDML* back to topmRNA from alignment at scaffold_29:541..2866- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_8848 ID=mRNA_8848|Name=jgi.p|Nanoce1779_2|604232|organism=Nannochloropsis oceanica|type=mRNA|length=2326bp|location=Sequence derived from alignment at scaffold_29:541..2866- (Nannochloropsis oceanica)
CAGCCACAAGCCACAAAGCAGTCTAAGAATCCAGCTACACACCGAGAGAT
GGCATCGGTACTGTCGGCAGAGACAAAGGGTGCCGTCTCTCTCCGGCGGC
TTTCCTGGGGCAGTCAATCGGGCAAAGATGCCTTCGATACTAGCGGGCGC
GAACGTAAGGGCTCCGTCGACACGGCAATGGGATGGGAACTTGACGTACT
CGAGCCCCCCTCCAGGCCAAGACAGACTTCATCGACGACCTCTCCATCCT
CTGGCCTCTTAACAAACAAGTCAAAGCCCCGGGAATCATCGTCATGGGTG
CCCACGGTGCCGGCAAATCTTCGATCCTGCATGCCTTGACAGGGATGCCT
TTCCCGCATTCCTCTGCCTCGGACAGCACTAGGCGCCCCATCAAGATGCA
GATCTCCTCCGATCCCACCACCGAGGCAACCTACGCCCTGGTCAGCACCG
TCGATCCTGCTTGCTCCCCGGACAAGACCAGCACCCAGCGTGTCTCTAAG
CTGGAGGACCTGTCCCGTGTGCTCGCCAAATTGAACGGAGACACAGAGAG
GCGGATTGGGGAAGAGGAGAGGGGACAGGCGATCTATGTCAAGGTGGTAC
GGCCTTCGGGAACGGCGTATACGGTGGTGGATTTGCCGGGAGTGGATGAA
AAAGATCCGGAATCCGTCCGTGTGGCGGAGGAGTTTATGCGTGATGAACC
CAACAGCCTGATTTTGGTGGTACTGCCCTTGGTAGATGTGTTTGAGCGGG
CGTTTCCCATGGCGTTGGCCAAGAGGGTTGACCCGGAGAGTCGGCGAACC
ATCGGGGTGGTGACCAAGACAGACCTTGTTCAAAAAGAGATGGAGGCAGT
GGAGAAGCTTCAAATGACCAGCCATACAGGCGTAAGTCTTCCTTTAGGGT
ATATTGCTGTGCGTTTGGCCAACGAGAAGGAGAAGCATAAGACTCGCAAG
CAATTATTGGAGAAGGAGCATGCCCTTTTCACGACCAACCCGTTGCTGGC
AGGCTTGAGGCCGGAAAGATGGGGCTCGGTGACATTGAAGAAATTAATTG
TGGATTACCAGTGCAATGCCATCGGGCACCTTGTTCCGGATGTCTGTCGT
CGGCTGCATGCAGAGCTACGGGAGCTGGAGAAAGAGGAGGAGGAGGAGGC
TGCGGCAGAGCCGGAAGGGAAGAAGGGGATGGGAGGAAAGCTGCTGTCCG
ACCATCAAGAATTCTTCAGGAAGCTTTGCACGGATGCGAATAGCCTGGGT
TTTGAAATTGGGGAGTTGGCTCTGAGCAGTGACACCCGGAAGGATCGACA
GCTCAACTTAGGTGCCCGTCTGACAGGTGCGATCAAAAAGCATGAAGAGG
AGGCGCGGAGAGCCTTGCCGGCAGCTGTTGCAGGCAAGGTGGGCCCTTGG
TTGAACCCGTCAGAGGGGGAGGTAGAAGGGACGACTACTGAGCCGCGGGT
ATATGTGAGCCGGGAGACGATGTCGCATGATTTGTTTCGGAAGTCGGTGA
GGGAGGTGTGCGGCCCTGTGCTGCGTGCGTATGCCACTGCCCTGCTTGGA
GAGGCGACCCTGCAGTTGAAGGAAGTGACGCATGTGCTGGTGCAGGAGAA
ATTCCAGGAGTTCCCGTGGTTGGTCGAGAGTGTGAAGCATGAGATTAACT
TGCTCTTGCAGAAGAAGAAAGGGGAAGCAGAGAGGGTGCTTGGTCGGATT
GTGGCCTCCGAGATGAACTGGTGCTTCTTGAATGAGGCGGATCTGAATGC
CGTCGAACGAGAAGTAGCTCTTAATATGGCGGGTAAGTCCGGGGGGGGGC
TGGGGTTTGGAAAGGTGGCGCCGTCGGGAGAGCAGCCAAATCAACAGTTG
CACTGGTCGGCGGAGATGTCGGAGGTGCTGAGTCCGAGTGAGCGAGACGT
GGGAAGAAATGGTTTGAGTCGAGTTGACTCGACGAGGGATACGCGTATGC
GGGAGTTGGCGTTGGATGCCTATGTGCGCTTGTTGTTGCGACGGGTGTTT
TACGCAATTCCTATGAACATTCGAAACGTGATTTTGAATGAGTTTAGGCG
TGATTTGGTGTCCATGGTGGCGGAGAAATATAACGATGAAACGAAGCTTC
GTACGGTCATGTCGGAGGAGTTGTGGAAGATCCAACAGCGACAGCAAAGG
GTGGAACGAAAGGCGTCTTTGACAGATTTGATGAAGAAGTTGGACATGTT
GTAAGGGAGCGATAACGCTAGAAGAGACAGGGTGATATGAGACTTATAAT
AAGGCGAAGAGGCAAGAAGAGGAAGGCGGGTTATGAGAAGAGAGAATCAT
GATACTTAAGAAACAGACAGAGACAA back to topCoding sequence (CDS) from alignment at scaffold_29:541..2866- >mRNA_8848 ID=mRNA_8848|Name=jgi.p|Nanoce1779_2|604232|organism=Nannochloropsis oceanica|type=CDS|length=4272bp|location=Sequence derived from alignment at scaffold_29:541..2866- (Nannochloropsis oceanica)
GCCAAGACAGACTTCATCGACGACCTCTCCATCCTCTGGCCTCTTAACAA
ACAAGTCAAAGCCCCGGGAATCATCGTCATGGGTGCCCACGGTGCCGGCA
AATCTTCGATCCTGCATGCCTTGACAGGGATGCCTTTCCCGCATTCCTCT
GCCTCGGACAGCACTAGGCGCCCCATCAAGATGCAGATCTCCTCCGATCC
CACCACCGAGGCAACCTACGCCCTGGTCAGCACCGTCGATCCTGCTTGCT
CCCCGGACAAGACCAGCACCCAGCGTGTCTCTAAGCTGGAGGACCTGTCC
CGTGTGCTCGCCAAATTGAACGGAGACACAGAGAGGCGGATTGGGGAAGA
GGAGAGGGGACAGGCGATCTATGTCAAGGTGGTACGGCCTTCGGGAACGG
CGTATACGGTGGTGGATTTGCCGGGAGTGGATGAAAAAGATCCGGAATCC
GTCCGTGTGGCGGAGGAGTTTATGCGTGATGAACCCAACAGCCTGATTTT
GGTGGTACTGCCCTTGGTAGATGTGTTTGAGCGGGCGTTTCCCATGGCGT
TGGCCAAGAGGGTTGACCCGGAGAGTCGGCGAACCATCGGGGTGGTGACC
AAGACAGACCTTGTTCAAAAAGAGATGGAGGCAGTGGAGAAGCTTCAAAT
GACCAGCCATACAGGCGTAAGTCTTCCTTTAGGGTATATTGCTGTGCGTT
TGGCCAACGAGAAGGAGAAGCATAAGACTCGCAAGCAATTATTGGAGAAG
GAGCATGCCCTTTTCACGACCAACCCGTTGCTGGCAGGCTTGAGGCCGGA
AAGATGGGGCTCGGTGACATTGAAGAAATTAATTGTGGATTACCAGTGCA
ATGCCATCGGGCACCTTGTTCCGGATGTCTGTCGTCGGCTGCATGCAGAG
CTACGGGAGCTGGAGAAAGAGGAGGAGGAGGAGGCTGCGGCAGAGCCGGA
AGGGAAGAAGGGGATGGGAGGAAAGCTGCTGTCCGACCATCAAGAATTCT
TCAGGAAGCTTTGCACGGATGCGAATAGCCTGGGTTTTGAAATTGGGGAG
TTGGCTCTGAGCAGTGACACCCGGAAGGATCGACAGCTCAACTTAGGTGC
CCGTCTGACAGGTGCGATCAAAAAGCATGAAGAGGAGGCGCGGAGAGCCT
TGCCGGCAGCTGTTGCAGGCAAGGTGGGCCCTTGGTTGAACCCGTCAGAG
GGGGAGGTAGAAGGGACGACTACTGAGCCGCGGGTATATGTGAGCCGGGA
GACGATGTCGCATGATTTGTTTCGGAAGTCGGTGAGGGAGGTGTGCGGCC
CTGTGCTGCGTGCGTATGCCACTGCCCTGCTTGGAGAGGCGACCCTGCAG
TTGAAGGAAGTGACGCATGTGCTGGTGCAGGAGAAATTCCAGGAGTTCCC
GTGGTTGGTCGAGAGTGTGAAGCATGAGATTAACTTGCTCTTGCAGAAGA
AGAAAGGGGAAGCAGAGAGGGTGCTTGGTCGGATTGTGGCCTCCGAGATG
AACTGGTGCTTCTTGAATGAGGCGGATCTGAATGCCGTCGAACGAGAAGT
AGCTCTTAATATGGCGGGTAAGTCCGGGGGGGGGCTGGGGTTTGGAAAGG
TGGCGCCGTCGGGAGAGCAGCCAAATCAACAGTTGCACTGGTCGGCGGAG
ATGTCGGAGGTGCTGAGTCCGAGTGAGCGAGACGTGGGAAGAAATGGTTT
GAGTCGAGTTGACTCGACGAGGGATACGCGTATGCGGGAGTTGGCGTTGG
ATGCCTATGTGCGCTTGTTGTTGCGACGGGTGTTTTACGCAATTCCTATG
AACATTCGAAACGTGATTTTGAATGAGTTTAGGCGTGATTTGGTGTCCAT
GGTGGCGGAGAAATATAACGATGAAACGAAGCTTCGTACGGTCATGTCGG
AGGAGTTGTGGAAGATCCAACAGCGACAGCAAAGGGTGGAACGAAAGGCG
TCTTTGACAGATTTGATGAAGAAGTTGGACATGTTGTAAATGGCATCGGT
ACTGTCGGCAGAGACAAAGGGTGCCGTCTCTCTCCGGCGGCTTTCCTGGG
GCAGTCAATCGGGCAAAGATGCCTTCGATACTAGCGGGCGCGAACGTAAG
GGCTCCGTCGACACGGCAATGGGATGGGAACTTGACGCCAAGACAGACTT
CATCGACGACCTCTCCATCCTCTGGCCTCTTAACAAACAAGTCAAAGCCC
CGGGAATCATCGTCATGGGTGCCCACGGTGCCGGCAAATCTTCGATCCTG
CATGCCTTGACAGGGATGCCTTTCCCGCATTCCTCTGCCTCGGACAGCAC
TAGGCGCCCCATCAAGATGCAGATCTCCTCCGATCCCACCACCGAGGCAA
CCTACGCCCTGGTCAGCACCGTCGATCCTGCTTGCTCCCCGGACAAGACC
AGCACCCAGCGTGTCTCTAAGCTGGAGGACCTGTCCCGTGTGCTCGCCAA
ATTGAACGGAGACACAGAGAGGCGGATTGGGGAAGAGGAGAGGGGACAGG
CGATCTATGTCAAGGTGGTACGGCCTTCGGGAACGGCGTATACGGTGGTG
GATTTGCCGGGAGTGGATGAAAAAGATCCGGAATCCGTCCGTGTGGCGGA
GGAGTTTATGCGTGATGAACCCAACAGCCTGATTTTGGTGGTACTGCCCT
TGGTAGATGTGTTTGAGCGGGCGTTTCCCATGGCGTTGGCCAAGAGGGTT
GACCCGGAGAGTCGGCGAACCATCGGGGTGGTGACCAAGACAGACCTTGT
TCAAAAAGAGATGGAGGCAGTGGAGAAGCTTCAAATGACCAGCCATACAG
GCGTAAGTCTTCCTTTAGGGTATATTGCTGTGCGTTTGGCCAACGAGAAG
GAGAAGCATAAGACTCGCAAGCAATTATTGGAGAAGGAGCATGCCCTTTT
CACGACCAACCCGTTGCTGGCAGGCTTGAGGCCGGAAAGATGGGGCTCGG
TGACATTGAAGAAATTAATTGTGGATTACCAGTGCAATGCCATCGGGCAC
CTTGTTCCGGATGTCTGTCGTCGGCTGCATGCAGAGCTACGGGAGCTGGA
GAAAGAGGAGGAGGAGGAGGCTGCGGCAGAGCCGGAAGGGAAGAAGGGGA
TGGGAGGAAAGCTGCTGTCCGACCATCAAGAATTCTTCAGGAAGCTTTGC
ACGGATGCGAATAGCCTGGGTTTTGAAATTGGGGAGTTGGCTCTGAGCAG
TGACACCCGGAAGGATCGACAGCTCAACTTAGGTGCCCGTCTGACAGGTG
CGATCAAAAAGCATGAAGAGGAGGCGCGGAGAGCCTTGCCGGCAGCTGTT
GCAGGCAAGGTGGGCCCTTGGTTGAACCCGTCAGAGGGGGAGGTAGAAGG
GACGACTACTGAGCCGCGGGTATATGTGAGCCGGGAGACGATGTCGCATG
ATTTGTTTCGGAAGTCGGTGAGGGAGGTGTGCGGCCCTGTGCTGCGTGCG
TATGCCACTGCCCTGCTTGGAGAGGCGACCCTGCAGTTGAAGGAAGTGAC
GCATGTGCTGGTGCAGGAGAAATTCCAGGAGTTCCCGTGGTTGGTCGAGA
GTGTGAAGCATGAGATTAACTTGCTCTTGCAGAAGAAGAAAGGGGAAGCA
GAGAGGGTGCTTGGTCGGATTGTGGCCTCCGAGATGAACTGGTGCTTCTT
GAATGAGGCGGATCTGAATGCCGTCGAACGAGAAGTAGCTCTTAATATGG
CGGGTAAGTCCGGGGGGGGGCTGGGGTTTGGAAAGGTGGCGCCGTCGGGA
GAGCAGCCAAATCAACAGTTGCACTGGTCGGCGGAGATGTCGGAGGTGCT
GAGTCCGAGTGAGCGAGACGTGGGAAGAAATGGTTTGAGTCGAGTTGACT
CGACGAGGGATACGCGTATGCGGGAGTTGGCGTTGGATGCCTATGTGCGC
TTGTTGTTGCGACGGGTGTTTTACGCAATTCCTATGAACATTCGAAACGT
GATTTTGAATGAGTTTAGGCGTGATTTGGTGTCCATGGTGGCGGAGAAAT
ATAACGATGAAACGAAGCTTCGTACGGTCATGTCGGAGGAGTTGTGGAAG
ATCCAACAGCGACAGCAAAGGGTGGAACGAAAGGCGTCTTTGACAGATTT
GATGAAGAAGTTGGACATGTTGTAAATGGCATCGGTACTGTCGGCAGAGA
CAAAGGGTGCCGTCTCTCTCCGGCGGCTTTCCTGGGGCAGTCAATCGGGC
AAAGATGCCTTCGATACTAGCGGGCGCGAACGTAAGGGCTCCGTCGACAC
GGCAATGGGATGGGAACTTGAC back to top
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