jgi.p|Nanoce1779_2|222992, mRNA_8847 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|222992
Unique NamemRNA_8847
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length541
Alignment locationscaffold_29:1..541 +

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Properties
Property NameValue
TranscriptId223078
TrackFilteredModels2
ProteinId222992
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_29supercontigscaffold_29:1..541 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|222992gene_8847Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|222992mRNA_8847-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8847CDS_8847Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8847 ID=mRNA_8847|Name=jgi.p|Nanoce1779_2|222992|organism=Nannochloropsis oceanica|type=mRNA|length=541bp
TATCATTTTAGGAGCAGTGAGATTATAGGTCTTCATTGTTTACAGCGACA
TTATATACGCGATATATAATTGTAAATGGGGGGCATAATTGTTTACATTC
TTCTCCAAGCTGGCGTATGCGTGTTCTTCCTGTCCCTCCCTCCCTCTGGC
TCTTCACTCTTTTTGTTTGTGTTACTTTGATCACGCGCTCAGGCACAACA
TTACTTGGCCCTCCGCGATCTCTTTTTCCGCTCTGCCACATTGATATTAC
ATACATGGTACTAATGAGGCTCAGTTGGTTGTTCGTCGCGCTAGTGCTTC
ACTCACTCGGAAGATTAACTTACTGTTGTGCCACCACTCACGCGTCACGT
GGGTTGCAGCCACTATCTTCCGGCTACCTACCTTCAATCTGTAACGAATG
CATGGGCGAGTAAGACGGAACCACGGCTTTCCCCCTTCTCCTCTGTCATT
CTGTCTTGTTGTCTCTAAAACCTCGGTCTCTGCTTGCTTACGTCTGCCTC
TCTGTCTGCTTCTTCGTGCTTCTCTCTGTTTGTTTGTTTCT
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protein sequence of jgi.p|Nanoce1779_2|222992

>mRNA_8847-protein ID=mRNA_8847-protein|Name=jgi.p|Nanoce1779_2|222992|organism=Nannochloropsis oceanica|type=polypeptide|length=99bp
MRVLPVPPSLWLFTLFVCVTLITRSGTTLLGPPRSLFPLCHIDITYMVLM
RLSWLFVALVLHSLGRLTYCCATTHASRGLQPLSSGYLPSICNECMGE*
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mRNA from alignment at scaffold_29:1..541+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8847 ID=mRNA_8847|Name=jgi.p|Nanoce1779_2|222992|organism=Nannochloropsis oceanica|type=mRNA|length=541bp|location=Sequence derived from alignment at scaffold_29:1..541+ (Nannochloropsis oceanica)
TATCATTTTAGGAGCAGTGAGATTATAGGTCTTCATTGTTTACAGCGACA
TTATATACGCGATATATAATTGTAAATGGGGGGCATAATTGTTTACATTC
TTCTCCAAGCTGGCGTATGCGTGTTCTTCCTGTCCCTCCCTCCCTCTGGC
TCTTCACTCTTTTTGTTTGTGTTACTTTGATCACGCGCTCAGGCACAACA
TTACTTGGCCCTCCGCGATCTCTTTTTCCGCTCTGCCACATTGATATTAC
ATACATGGTACTAATGAGGCTCAGTTGGTTGTTCGTCGCGCTAGTGCTTC
ACTCACTCGGAAGATTAACTTACTGTTGTGCCACCACTCACGCGTCACGT
GGGTTGCAGCCACTATCTTCCGGCTACCTACCTTCAATCTGTAACGAATG
CATGGGCGAGTAAGACGGAACCACGGCTTTCCCCCTTCTCCTCTGTCATT
CTGTCTTGTTGTCTCTAAAACCTCGGTCTCTGCTTGCTTACGTCTGCCTC
TCTGTCTGCTTCTTCGTGCTTCTCTCTGTTTGTTTGTTTCT
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Coding sequence (CDS) from alignment at scaffold_29:1..541+

>mRNA_8847 ID=mRNA_8847|Name=jgi.p|Nanoce1779_2|222992|organism=Nannochloropsis oceanica|type=CDS|length=297bp|location=Sequence derived from alignment at scaffold_29:1..541+ (Nannochloropsis oceanica)
ATGCGTGTTCTTCCTGTCCCTCCCTCCCTCTGGCTCTTCACTCTTTTTGT
TTGTGTTACTTTGATCACGCGCTCAGGCACAACATTACTTGGCCCTCCGC
GATCTCTTTTTCCGCTCTGCCACATTGATATTACATACATGGTACTAATG
AGGCTCAGTTGGTTGTTCGTCGCGCTAGTGCTTCACTCACTCGGAAGATT
AACTTACTGTTGTGCCACCACTCACGCGTCACGTGGGTTGCAGCCACTAT
CTTCCGGCTACCTACCTTCAATCTGTAACGAATGCATGGGCGAGTAA
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Synonyms
Publications