jgi.p|Nanoce1779_2|604229, mRNA_8846 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|604229
Unique NamemRNA_8846
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length449
Alignment locationscaffold_28:314151..314599 -

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Properties
Property NameValue
TranscriptId604315
TrackFilteredModels2
ProteinId604229
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_28supercontigscaffold_28:314151..314599 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|604229gene_8846Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|604229mRNA_8846-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8846CDS_8846Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8846 ID=mRNA_8846|Name=jgi.p|Nanoce1779_2|604229|organism=Nannochloropsis oceanica|type=mRNA|length=449bp
AAACCCGGAGGAAAGCCACCAGAGGGGCGTGCTTTAGATGACAAAATGTT
GTTGGTAATGCCTCAGTTTTTTATGGACCCGGGGCTGTGGACCCAGCAGC
CAGCCTTGGCTGCTTGTCTCACTTGCCCTCTTCTGTTGAGCGGCCTTACA
GTCAATACCACCAACGCTACAGCCACCCGTGTAGGTTTGTCGCATCGCTC
TCGTCCTTGTGCAGGGGACTGTGTCAGTGTCTGGTATCGTAGTGGTGGAT
GTGGGTTTTGCCTTTCTCCTTCTTTGCTACGTGCACATCATCGTGCACGG
CAATCCTCCTCCCTCTTTTGGTCTTGCCCGTTGGCACACTAGGCAGTGCG
CACCCGCGCCGCCACCATTTTGTGGTGTAGCACGCATTTTGTGAAGACGT
CTATCTGGTACCCGAGCTGGTGTGGTTCGGAATAGCTTTGTTGTACGCT
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protein sequence of jgi.p|Nanoce1779_2|604229

>mRNA_8846-protein ID=mRNA_8846-protein|Name=jgi.p|Nanoce1779_2|604229|organism=Nannochloropsis oceanica|type=polypeptide|length=99bp
MLLVMPQFFMDPGLWTQQPALAACLTCPLLLSGLTVNTTNATATRVGLSH
RSRPCAGDCVSVWYRSGGCGFCLSPSLLRAHHRARQSSSLFWSCPLAH*
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mRNA from alignment at scaffold_28:314151..314599-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8846 ID=mRNA_8846|Name=jgi.p|Nanoce1779_2|604229|organism=Nannochloropsis oceanica|type=mRNA|length=449bp|location=Sequence derived from alignment at scaffold_28:314151..314599- (Nannochloropsis oceanica)
AAACCCGGAGGAAAGCCACCAGAGGGGCGTGCTTTAGATGACAAAATGTT
GTTGGTAATGCCTCAGTTTTTTATGGACCCGGGGCTGTGGACCCAGCAGC
CAGCCTTGGCTGCTTGTCTCACTTGCCCTCTTCTGTTGAGCGGCCTTACA
GTCAATACCACCAACGCTACAGCCACCCGTGTAGGTTTGTCGCATCGCTC
TCGTCCTTGTGCAGGGGACTGTGTCAGTGTCTGGTATCGTAGTGGTGGAT
GTGGGTTTTGCCTTTCTCCTTCTTTGCTACGTGCACATCATCGTGCACGG
CAATCCTCCTCCCTCTTTTGGTCTTGCCCGTTGGCACACTAGGCAGTGCG
CACCCGCGCCGCCACCATTTTGTGGTGTAGCACGCATTTTGTGAAGACGT
CTATCTGGTACCCGAGCTGGTGTGGTTCGGAATAGCTTTGTTGTACGCT
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Coding sequence (CDS) from alignment at scaffold_28:314151..314599-

>mRNA_8846 ID=mRNA_8846|Name=jgi.p|Nanoce1779_2|604229|organism=Nannochloropsis oceanica|type=CDS|length=297bp|location=Sequence derived from alignment at scaffold_28:314151..314599- (Nannochloropsis oceanica)
ATGTTGTTGGTAATGCCTCAGTTTTTTATGGACCCGGGGCTGTGGACCCA
GCAGCCAGCCTTGGCTGCTTGTCTCACTTGCCCTCTTCTGTTGAGCGGCC
TTACAGTCAATACCACCAACGCTACAGCCACCCGTGTAGGTTTGTCGCAT
CGCTCTCGTCCTTGTGCAGGGGACTGTGTCAGTGTCTGGTATCGTAGTGG
TGGATGTGGGTTTTGCCTTTCTCCTTCTTTGCTACGTGCACATCATCGTG
CACGGCAATCCTCCTCCCTCTTTTGGTCTTGCCCGTTGGCACACTAG
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Synonyms
Publications