jgi.p|Nanoce1779_2|604225, mRNA_8844 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|604225
Unique NamemRNA_8844
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length449
Alignment locationscaffold_28:312558..313006 -

Link to JBrowse

Properties
Property NameValue
TranscriptId604311
TrackFilteredModels2
ProteinId604225
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_28supercontigscaffold_28:312558..313006 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|604225gene_8844Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|604225mRNA_8844-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8844CDS_8844Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8844 ID=mRNA_8844|Name=jgi.p|Nanoce1779_2|604225|organism=Nannochloropsis oceanica|type=mRNA|length=449bp
AAACCCGGAGGAAAGCCACCAGAGGGGCGTGCTTTAGATGACAAAATGTT
GTTGGTAATGCCTCAGTTTTTTATGGACCCGGGGCTGTGGACCCAGCAGC
CAGCCTTGGCTGCTTGTCTCCCTTGCCCTCTTCTGTTGAGCGGCCTTACA
GTCAATACCACCAACGCTACAGCCACCCGTGTAGGTTTGTCGCATCGCTC
TCGTCCTTGTGCAGGGGACTGTGTCAGTGTCTGGTATCGTAGTGGTGGAT
GTGGGTTTTGCCTTTCTCCTTCTTTGCTACGTGCACATCATCGTGCACGG
CAATCCTCCTCCCTCTTTTGGTCTTGCCCGTTGGCACACTAGGCAGTGCG
CACCCGCGCCGCCACCATTTTGTGGTGTAGCACGCATTTTGTGAAGACGT
CTATCTGGTACCCGAGCTGGTGTGGTTCGGAATAGCTTTGTTGTACGCT
back to top

protein sequence of jgi.p|Nanoce1779_2|604225

>mRNA_8844-protein ID=mRNA_8844-protein|Name=jgi.p|Nanoce1779_2|604225|organism=Nannochloropsis oceanica|type=polypeptide|length=99bp
MLLVMPQFFMDPGLWTQQPALAACLPCPLLLSGLTVNTTNATATRVGLSH
RSRPCAGDCVSVWYRSGGCGFCLSPSLLRAHHRARQSSSLFWSCPLAH*
back to top

mRNA from alignment at scaffold_28:312558..313006-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8844 ID=mRNA_8844|Name=jgi.p|Nanoce1779_2|604225|organism=Nannochloropsis oceanica|type=mRNA|length=449bp|location=Sequence derived from alignment at scaffold_28:312558..313006- (Nannochloropsis oceanica)
AAACCCGGAGGAAAGCCACCAGAGGGGCGTGCTTTAGATGACAAAATGTT
GTTGGTAATGCCTCAGTTTTTTATGGACCCGGGGCTGTGGACCCAGCAGC
CAGCCTTGGCTGCTTGTCTCCCTTGCCCTCTTCTGTTGAGCGGCCTTACA
GTCAATACCACCAACGCTACAGCCACCCGTGTAGGTTTGTCGCATCGCTC
TCGTCCTTGTGCAGGGGACTGTGTCAGTGTCTGGTATCGTAGTGGTGGAT
GTGGGTTTTGCCTTTCTCCTTCTTTGCTACGTGCACATCATCGTGCACGG
CAATCCTCCTCCCTCTTTTGGTCTTGCCCGTTGGCACACTAGGCAGTGCG
CACCCGCGCCGCCACCATTTTGTGGTGTAGCACGCATTTTGTGAAGACGT
CTATCTGGTACCCGAGCTGGTGTGGTTCGGAATAGCTTTGTTGTACGCT
back to top

Coding sequence (CDS) from alignment at scaffold_28:312558..313006-

>mRNA_8844 ID=mRNA_8844|Name=jgi.p|Nanoce1779_2|604225|organism=Nannochloropsis oceanica|type=CDS|length=297bp|location=Sequence derived from alignment at scaffold_28:312558..313006- (Nannochloropsis oceanica)
ATGTTGTTGGTAATGCCTCAGTTTTTTATGGACCCGGGGCTGTGGACCCA
GCAGCCAGCCTTGGCTGCTTGTCTCCCTTGCCCTCTTCTGTTGAGCGGCC
TTACAGTCAATACCACCAACGCTACAGCCACCCGTGTAGGTTTGTCGCAT
CGCTCTCGTCCTTGTGCAGGGGACTGTGTCAGTGTCTGGTATCGTAGTGG
TGGATGTGGGTTTTGCCTTTCTCCTTCTTTGCTACGTGCACATCATCGTG
CACGGCAATCCTCCTCCCTCTTTTGGTCTTGCCCGTTGGCACACTAG
back to top
Synonyms
Publications