jgi.p|Nanoce1779_2|221734, mRNA_8843 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|221734
Unique NamemRNA_8843
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length651
Alignment locationscaffold_28:311669..312528 -

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Properties
Property NameValue
TranscriptId221820
TrackFilteredModels2
ProteinId221734
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_28supercontigscaffold_28:311669..312528 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|221734gene_8843Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|221734mRNA_8843-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8843CDS_8843Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8843 ID=mRNA_8843|Name=jgi.p|Nanoce1779_2|221734|organism=Nannochloropsis oceanica|type=mRNA|length=651bp
CTCCCTCCCTCCCACACACAACAACCTGCACTGCTGCTTGCTTTGCTGCT
CGCTGCCACCATCAGCCACGACCACCAGAGGGACAGCATGCTTAGCAGCC
TGGCTACGAAGGCAGGAGCCATGGCGAGGAGACGCGGCGCGCTTTTCGGC
ACAGGGAAGGGACGCGGGCTGCGGGGGGCGTTCCTCTCGACACTTCAAAC
GGGGACGGGGACAGACAGTAGGGGGGGGTCCGCGAAGGAGTACGCGGTAG
GCCTCCAGATCGTTGGTGGGGTACTAGGGGTCGCTAGCTTTACCGCCGTG
GCCGTCCATCGTCTCGACCAGGGGGAGATCGAGCGTGTAAAAGGGGAGAT
CAAGCGTGTGGAGGGCGAGCGAGCGGCGGAGCTTAAATTGGCAGCGGCGG
AGATCAAGCGTGTGGAGGGCGAGCGAAGGTTGTCCGAGGAGCGTCTGAGG
GCGGAGGTGGACCGATATAAGTACGACCTACAACTTAGGTTCACCCAAGA
CTTCAAACCGTATCAAGCCGCAAAGGAGGAGGCAAACAAAGAGAGAGGAG
GATCAAGAGGGCGGCAAAAGGAAGAGAAGACGGAGTAGTTTTTCAAACTT
AAGAGTGTAGCTGTACAAAAATATGTAAAAGACACACCAAAGACATGTAC
A
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protein sequence of jgi.p|Nanoce1779_2|221734

>mRNA_8843-protein ID=mRNA_8843-protein|Name=jgi.p|Nanoce1779_2|221734|organism=Nannochloropsis oceanica|type=polypeptide|length=167bp
MLSSLATKAGAMARRRGALFGTGKGRGLRGAFLSTLQTGTGTDSRGGSAK
EYAVGLQIVGGVLGVASFTAVAVHRLDQGEIERVKGEIKRVEGERAAELK
LAAAEIKRVEGERRLSEERLRAEVDRYKYDLQLRFTQDFKPYQAAKEEAN
KERGGSRGRQKEEKTE*
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mRNA from alignment at scaffold_28:311669..312528-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8843 ID=mRNA_8843|Name=jgi.p|Nanoce1779_2|221734|organism=Nannochloropsis oceanica|type=mRNA|length=860bp|location=Sequence derived from alignment at scaffold_28:311669..312528- (Nannochloropsis oceanica)
CTCCCTCCCTCCCACACACAACAACCTGCACTGCTGCTTGCTTTGCTGCT
CGCTGCCACCATCAGCCACGACCACCAGAGGGACAGCATGCTTAGCAGCC
TGGCTACGAAGGCAGGAGCCATGGCGAGGAGACGCGGCGCGCTTTTCGGC
ACAGGTAAGGTGGCTTGTGTAGATGCACCTTGGGGAGGAGGGTTTGTTGG
TGGCCGTGGGGAGGGACGTTCGGTGCACGCGACTGCCTCCTGCCCGCGGT
ATGTAGATCCATTTTCGTCGGCCTACCTGCCCTGTATGCGTTTCAATCTT
TGCTGTGTGGACAAGAGGCCGCGCAAGGTGTTGACGCACAAGCACATCCA
TACACGCCAACAGGGAAGGGACGCGGGCTGCGGGGGGCGTTCCTCTCGAC
ACTTCAAACGGGGACGGGGACAGACAGTAGGGGGGGGTCCGCGAAGGAGT
ACGCGGTAGGCCTCCAGATCGTTGGTGGGGTACTAGGGGTCGCTAGCTTT
ACCGCCGTGGCCGTCCATCGTCTCGACCAGGGGGAGATCGAGCGTGTAAA
AGGGGAGATCAAGCGTGTGGAGGGCGAGCGAGCGGCGGAGCTTAAATTGG
CAGCGGCGGAGATCAAGCGTGTGGAGGGCGAGCGAAGGTTGTCCGAGGAG
CGTCTGAGGGCGGAGGTGGACCGATATAAGTACGACCTACAACTTAGGTT
CACCCAAGACTTCAAACCGTATCAAGCCGCAAAGGAGGAGGCAAACAAAG
AGAGAGGAGGATCAAGAGGGCGGCAAAAGGAAGAGAAGACGGAGTAGTTT
TTCAAACTTAAGAGTGTAGCTGTACAAAAATATGTAAAAGACACACCAAA
GACATGTACA
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Coding sequence (CDS) from alignment at scaffold_28:311669..312528-

>mRNA_8843 ID=mRNA_8843|Name=jgi.p|Nanoce1779_2|221734|organism=Nannochloropsis oceanica|type=CDS|length=1002bp|location=Sequence derived from alignment at scaffold_28:311669..312528- (Nannochloropsis oceanica)
GGAAGGGACGCGGGCTGCGGGGGGCGTTCCTCTCGACACTTCAAACGGGG
ACGGGGACAGACAGTAGGGGGGGGTCCGCGAAGGAGTACGCGGTAGGCCT
CCAGATCGTTGGTGGGGTACTAGGGGTCGCTAGCTTTACCGCCGTGGCCG
TCCATCGTCTCGACCAGGGGGAGATCGAGCGTGTAAAAGGGGAGATCAAG
CGTGTGGAGGGCGAGCGAGCGGCGGAGCTTAAATTGGCAGCGGCGGAGAT
CAAGCGTGTGGAGGGCGAGCGAAGGTTGTCCGAGGAGCGTCTGAGGGCGG
AGGTGGACCGATATAAGTACGACCTACAACTTAGGTTCACCCAAGACTTC
AAACCGTATCAAGCCGCAAAGGAGGAGGCAAACAAAGAGAGAGGAGGATC
AAGAGGGCGGCAAAAGGAAGAGAAGACGGAGTAGATGCTTAGCAGCCTGG
CTACGAAGGCAGGAGCCATGGCGAGGAGACGCGGCGCGCTTTTCGGCACA
GGGAAGGGACGCGGGCTGCGGGGGGCGTTCCTCTCGACACTTCAAACGGG
GACGGGGACAGACAGTAGGGGGGGGTCCGCGAAGGAGTACGCGGTAGGCC
TCCAGATCGTTGGTGGGGTACTAGGGGTCGCTAGCTTTACCGCCGTGGCC
GTCCATCGTCTCGACCAGGGGGAGATCGAGCGTGTAAAAGGGGAGATCAA
GCGTGTGGAGGGCGAGCGAGCGGCGGAGCTTAAATTGGCAGCGGCGGAGA
TCAAGCGTGTGGAGGGCGAGCGAAGGTTGTCCGAGGAGCGTCTGAGGGCG
GAGGTGGACCGATATAAGTACGACCTACAACTTAGGTTCACCCAAGACTT
CAAACCGTATCAAGCCGCAAAGGAGGAGGCAAACAAAGAGAGAGGAGGAT
CAAGAGGGCGGCAAAAGGAAGAGAAGACGGAGTAGATGCTTAGCAGCCTG
GCTACGAAGGCAGGAGCCATGGCGAGGAGACGCGGCGCGCTTTTCGGCAC
AG
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Synonyms
Publications