jgi.p|Nanoce1779_2|604221, mRNA_8842 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|604221
Unique Name	mRNA_8842
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	931
Alignment location	scaffold_28:310991..311921 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	604307
Track	FilteredModels2
ProteinId	604221

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_28	supercontig	scaffold_28:310991..311921 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|604221	gene_8842	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|604221	mRNA_8842-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8842	CDS_8842	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_28:310991..311921+
coding sequence from alignment at scaffold_28:310991..311921+

mRNA sequence

>mRNA_8842 ID=mRNA_8842|Name=jgi.p|Nanoce1779_2|604221|organism=Nannochloropsis oceanica|type=mRNA|length=931bp
AAGAAGAAGAAGAAGAAGAAGAAGAAGGAAAAAAAAGGGGGAGGAGAGAG
GAGGAAAAGAGGACGGGGAATAAGAAGAGGAGGAGGACGAGCTAGAAAAG
GGAAGAGTAAAGTAATCAAATGGCTTTACTGTATGGTCTGCAAAGCCCTG
GCCATGTGCCTTCTCGGCTTCCTGCCCTTATTCTTCATCCCCCTCCCTTC
CTTCCTCCAACCCTTCCTCGTGATTTGTGTGAGAGTGTCGATTGGCTTTC
CAATGGTGGGGATGGGAGAAAACCTTTCCCTGCGCGCCTACGGTATACCC
GGGCGGCCCTCCCCCGCTCCTTTTCCTTCATGGAGTAGGGCTGGCCGCGC
AGGGGGTAGGAGAGAAGGCAGGGATGGAGGCCAAGAGACTGGCCGCACCA
ACGCGGGACGCCAAAGCAATCGCTGCAGAAGCCACAATAGCAGCCAAGTG
GAGGGCATGGCGGTATGGGAAAATGAAAGGTGGGTGTCAAGCCCCCCGAC
CCATTCCTTCCCCACTACTCCTAATACGGAAGAGATGATTGTGGCAGAGA
TTAAAGAAATGACCAGAGAATCAAAAGAGAGAAAGAAGGAACGCACCACG
GTCGAAACATTTTAAGAGCCCTCCTTTCGACATTTTTGTTCAGTCCCGTC
CCCACCTCTTCCTTATATCCCCGGCCACTGTACATGTCTTTGGTGTGTCT
TTTACATATTTTTGTACAGCTACACTCTTAAGTTTGAAAAACTACTCCGT
CTTCTCTTCCTTTTGCCGCCCTCTTGATCCTCCTCTCTCTTTGTTTGCCT
CCTCCTTTGCGGCTTGATACGGTTTGAAGTCTTGGGTGAACCTAAGTTGT
AGGTCGTACTTATATCGGTCCACCTCCGCCCTCAGACGCTCCTCGGACAA
CCTTCGCTCGCCCTCCACACGCTTGATCTCC

protein sequence of jgi.p|Nanoce1779_2|604221

>mRNA_8842-protein ID=mRNA_8842-protein|Name=jgi.p|Nanoce1779_2|604221|organism=Nannochloropsis oceanica|type=polypeptide|length=161bp
MVCKALAMCLLGFLPLFFIPLPSFLQPFLVICVRVSIGFPMVGMGENLSL
RAYGIPGRPSPAPFPSWSRAGRAGGRREGRDGGQETGRTNAGRQSNRCRS
HNSSQVEGMAVWENERWVSSPPTHSFPTTPNTEEMIVAEIKEMTRESKER
KKERTTVETF*

mRNA from alignment at scaffold_28:310991..311921+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8842 ID=mRNA_8842|Name=jgi.p|Nanoce1779_2|604221|organism=Nannochloropsis oceanica|type=mRNA|length=931bp|location=Sequence derived from alignment at scaffold_28:310991..311921+ (Nannochloropsis oceanica)
AAGAAGAAGAAGAAGAAGAAGAAGAAGGAAAAAAAAGGGGGAGGAGAGAG
GAGGAAAAGAGGACGGGGAATAAGAAGAGGAGGAGGACGAGCTAGAAAAG
GGAAGAGTAAAGTAATCAAATGGCTTTACTGTATGGTCTGCAAAGCCCTG
GCCATGTGCCTTCTCGGCTTCCTGCCCTTATTCTTCATCCCCCTCCCTTC
CTTCCTCCAACCCTTCCTCGTGATTTGTGTGAGAGTGTCGATTGGCTTTC
CAATGGTGGGGATGGGAGAAAACCTTTCCCTGCGCGCCTACGGTATACCC
GGGCGGCCCTCCCCCGCTCCTTTTCCTTCATGGAGTAGGGCTGGCCGCGC
AGGGGGTAGGAGAGAAGGCAGGGATGGAGGCCAAGAGACTGGCCGCACCA
ACGCGGGACGCCAAAGCAATCGCTGCAGAAGCCACAATAGCAGCCAAGTG
GAGGGCATGGCGGTATGGGAAAATGAAAGGTGGGTGTCAAGCCCCCCGAC
CCATTCCTTCCCCACTACTCCTAATACGGAAGAGATGATTGTGGCAGAGA
TTAAAGAAATGACCAGAGAATCAAAAGAGAGAAAGAAGGAACGCACCACG
GTCGAAACATTTTAAGAGCCCTCCTTTCGACATTTTTGTTCAGTCCCGTC
CCCACCTCTTCCTTATATCCCCGGCCACTGTACATGTCTTTGGTGTGTCT
TTTACATATTTTTGTACAGCTACACTCTTAAGTTTGAAAAACTACTCCGT
CTTCTCTTCCTTTTGCCGCCCTCTTGATCCTCCTCTCTCTTTGTTTGCCT
CCTCCTTTGCGGCTTGATACGGTTTGAAGTCTTGGGTGAACCTAAGTTGT
AGGTCGTACTTATATCGGTCCACCTCCGCCCTCAGACGCTCCTCGGACAA
CCTTCGCTCGCCCTCCACACGCTTGATCTCC

Coding sequence (CDS) from alignment at scaffold_28:310991..311921+

>mRNA_8842 ID=mRNA_8842|Name=jgi.p|Nanoce1779_2|604221|organism=Nannochloropsis oceanica|type=CDS|length=483bp|location=Sequence derived from alignment at scaffold_28:310991..311921+ (Nannochloropsis oceanica)
ATGGTCTGCAAAGCCCTGGCCATGTGCCTTCTCGGCTTCCTGCCCTTATT
CTTCATCCCCCTCCCTTCCTTCCTCCAACCCTTCCTCGTGATTTGTGTGA
GAGTGTCGATTGGCTTTCCAATGGTGGGGATGGGAGAAAACCTTTCCCTG
CGCGCCTACGGTATACCCGGGCGGCCCTCCCCCGCTCCTTTTCCTTCATG
GAGTAGGGCTGGCCGCGCAGGGGGTAGGAGAGAAGGCAGGGATGGAGGCC
AAGAGACTGGCCGCACCAACGCGGGACGCCAAAGCAATCGCTGCAGAAGC
CACAATAGCAGCCAAGTGGAGGGCATGGCGGTATGGGAAAATGAAAGGTG
GGTGTCAAGCCCCCCGACCCATTCCTTCCCCACTACTCCTAATACGGAAG
AGATGATTGTGGCAGAGATTAAAGAAATGACCAGAGAATCAAAAGAGAGA
AAGAAGGAACGCACCACGGTCGAAACATTTTAA

Synonyms

Publications