jgi.p|Nanoce1779_2|604218, mRNA_8841 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|604218
Unique NamemRNA_8841
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length449
Alignment locationscaffold_28:310221..310669 +

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Properties
Property NameValue
TranscriptId604304
TrackFilteredModels2
ProteinId604218
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_28supercontigscaffold_28:310221..310669 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|604218gene_8841Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|604218mRNA_8841-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8841CDS_8841Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8841 ID=mRNA_8841|Name=jgi.p|Nanoce1779_2|604218|organism=Nannochloropsis oceanica|type=mRNA|length=449bp
TCCTCTATCTCACACCACCATCGCAGTCTCAGCAACAAGCGGTCCCAGCA
TCCCCGGCACTCCCTCCCGCCCTCCTGCCCGTCTTGACCCTCCATAAATG
GGCCTTCTATTACCCGTTCATGCACTTCCGCTGCTTCATTTGCCGCTCCT
CCCTTTGCGCCAGTCAGTCAGCGGGAGACCTCCGCCTTTTATCCATTCCT
CCCCGACGAGGTCCCGCGCCTCCGAACCCTCCTCCAAACCATTTTTCTTT
GTCATATCACGCCCCGTCTCTCTGCTCCCTTACCACCACTGGCTGAGGAG
GAGGGCAGGAAGGAGGAAGAGGGGGCGGAAGGGCGAGGCATTGGAGGAGA
GTGTGGATGTGTGCGTGGACGTTAACGTGGACAGGCAGGGGAGGGCATGG
GTGCCGGATCTAATCCCCTAGGACCTGCCAACCGCCGCCTTGCTCTCTG
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protein sequence of jgi.p|Nanoce1779_2|604218

>mRNA_8841-protein ID=mRNA_8841-protein|Name=jgi.p|Nanoce1779_2|604218|organism=Nannochloropsis oceanica|type=polypeptide|length=108bp
MGLLLPVHALPLLHLPLLPLRQSVSGRPPPFIHSSPTRSRASEPSSKPFF
FVISRPVSLLPYHHWLRRRAGRRKRGRKGEALEESVDVCVDVNVDRQGRA
WVPDLIP*
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mRNA from alignment at scaffold_28:310221..310669+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8841 ID=mRNA_8841|Name=jgi.p|Nanoce1779_2|604218|organism=Nannochloropsis oceanica|type=mRNA|length=449bp|location=Sequence derived from alignment at scaffold_28:310221..310669+ (Nannochloropsis oceanica)
TCCTCTATCTCACACCACCATCGCAGTCTCAGCAACAAGCGGTCCCAGCA
TCCCCGGCACTCCCTCCCGCCCTCCTGCCCGTCTTGACCCTCCATAAATG
GGCCTTCTATTACCCGTTCATGCACTTCCGCTGCTTCATTTGCCGCTCCT
CCCTTTGCGCCAGTCAGTCAGCGGGAGACCTCCGCCTTTTATCCATTCCT
CCCCGACGAGGTCCCGCGCCTCCGAACCCTCCTCCAAACCATTTTTCTTT
GTCATATCACGCCCCGTCTCTCTGCTCCCTTACCACCACTGGCTGAGGAG
GAGGGCAGGAAGGAGGAAGAGGGGGCGGAAGGGCGAGGCATTGGAGGAGA
GTGTGGATGTGTGCGTGGACGTTAACGTGGACAGGCAGGGGAGGGCATGG
GTGCCGGATCTAATCCCCTAGGACCTGCCAACCGCCGCCTTGCTCTCTG
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Coding sequence (CDS) from alignment at scaffold_28:310221..310669+

>mRNA_8841 ID=mRNA_8841|Name=jgi.p|Nanoce1779_2|604218|organism=Nannochloropsis oceanica|type=CDS|length=324bp|location=Sequence derived from alignment at scaffold_28:310221..310669+ (Nannochloropsis oceanica)
ATGGGCCTTCTATTACCCGTTCATGCACTTCCGCTGCTTCATTTGCCGCT
CCTCCCTTTGCGCCAGTCAGTCAGCGGGAGACCTCCGCCTTTTATCCATT
CCTCCCCGACGAGGTCCCGCGCCTCCGAACCCTCCTCCAAACCATTTTTC
TTTGTCATATCACGCCCCGTCTCTCTGCTCCCTTACCACCACTGGCTGAG
GAGGAGGGCAGGAAGGAGGAAGAGGGGGCGGAAGGGCGAGGCATTGGAGG
AGAGTGTGGATGTGTGCGTGGACGTTAACGTGGACAGGCAGGGGAGGGCA
TGGGTGCCGGATCTAATCCCCTAG
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Synonyms
Publications