jgi.p|Nanoce1779_2|627296, mRNA_884 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|627296
Unique Name	mRNA_884
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	651
Alignment location	scaffold_2:658269..659487 +

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Properties


Property Name	Value
TranscriptId	627382
Track	FilteredModels2
ProteinId	627296

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:658269..659487 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|627296	gene_884	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|627296	mRNA_884-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_884	CDS_884	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:658269..659487+
coding sequence from alignment at scaffold_2:658269..659487+

mRNA sequence

>mRNA_884 ID=mRNA_884|Name=jgi.p|Nanoce1779_2|627296|organism=Nannochloropsis oceanica|type=mRNA|length=651bp
ACAGGCGCAACCACTGACACGAACCAAGCTGCCATGCGCGAGCCAGAGCC
GTACGACCATCTTTTCAAGCTTCTGCTTATAGGTGACGCAGGCGTGGGGA
AGTCGAGCATCCTCCTCCGCTTCACGGACGACGCCTTCGACGACCACCAG
CAGTCCACCATCGGGGTAGACTTTAAGGTGAAGATGATAGAGGTCGGGCA
AAAGAAGATCAAGATGACGATCTGGGACACGGCGGGGCAAGAACGGTTTC
GGACGTTGACCAGTTCGTACTATCGCGGGGCTCAGGGAATTATTCTTGTA
TACGACGTGAATCGGCGGGACTCCTTCGAGAATCTCAACCACTGGTTGCA
AGAGGTGGAAGTTTATAGCACGGGCGGGGGTCGTGAAATCATCAAGGTGC
TGGTAGGAAACAAGGTAGATAAAGACAGGTTGGTGCCACGGGAGGAAGCA
GAGGCATGGGCACGGAGTAAAGGGATGCTGTTCCTGGAGGCCAGCGCCAA
GACAAGGACGGGGATCAAGCAGGTGTTCCAGGAGGTGGTGCAGAAGATTC
TCGATAACCCGGCTCTCTTGACGAATACCGCCCCCGGGCGGCCACGGGTT
AGCTTGCAGGCAGATGCGGGGGCGAAGGTGGGGGGGGGTTACTGCTGTTG
A

protein sequence of jgi.p|Nanoce1779_2|627296

>mRNA_884-protein ID=mRNA_884-protein|Name=jgi.p|Nanoce1779_2|627296|organism=Nannochloropsis oceanica|type=polypeptide|length=206bp
MREPEPYDHLFKLLLIGDAGVGKSSILLRFTDDAFDDHQQSTIGVDFKVK
MIEVGQKKIKMTIWDTAGQERFRTLTSSYYRGAQGIILVYDVNRRDSFEN
LNHWLQEVEVYSTGGGREIIKVLVGNKVDKDRLVPREEAEAWARSKGMLF
LEASAKTRTGIKQVFQEVVQKILDNPALLTNTAPGRPRVSLQADAGAKVG
GGYCC*

mRNA from alignment at scaffold_2:658269..659487+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_884 ID=mRNA_884|Name=jgi.p|Nanoce1779_2|627296|organism=Nannochloropsis oceanica|type=mRNA|length=1219bp|location=Sequence derived from alignment at scaffold_2:658269..659487+ (Nannochloropsis oceanica)
ACAGGCGCAACCACTGACACGAACCAAGCTGCCATGCGCGAGCCAGAGCC
GTACGACCATCTTTTCAAGCTTCTGCTTATAGGTGACGCAGGCGTGGGGA
AGTCGAGGTACGTCTTGAGGTCGTGGAGCGGGAAAGAGGGGCATGGGAAT
GGGCAGTTTGAGAACGTCGTCTTGGGTAGGGGAACTCTGATTCGAGGAAA
GGAGGTGGTGGGCTTGCTGAATAACACCTTTCTGGCTGTAACACTGATAT
TTGGGGTAGGGGTAGGGGCCAGCAATATGGCCGAGAGTCGGAATGGTCCT
CAGGTGATGCTGCCGAGCGAGGCGCATATTCCGCGGAACGCAATCGAAAG
CCCAAAGCGCCGCACAAGAAGTAGCGCTTTCAAACCTCGAGGACGTAAAA
AGTTGATGGCTTTATCAGGCACTTGGGCTCACACACTCCCGTCTTCCGTC
CATCCCTCCCTCCCGTCCTTCAAACCCCGTGCTTACAGCATCCTCCTCCG
CTTCACGGACGACGCCTTCGACGACCACCAGCAGTCCACCATCGGGGTAG
ACTTTAAGGTGAAGATGATAGAGGTCGGGCAAAAGAAGATCAAGATGACG
ATCTGGGACACGGCGGGGCAAGAACGGTTTCGGACGTTGACCAGTTCGTA
CTATCGCGGGGCTCAGGGAATTATTCTTGGTAAGGTTTTGGAGGAAGGAG
GGAGGGAGGGAATAGGAAGATGGAGGGGGGGGGAGGTGAATGATTGAGAT
GCAGATCAGGCGGATAATGAGGAGAGGTATGAGGGAATTAATTCGTTTTT
ATGCAGGTTGCTGTTACTAATCTTGCTCCCTCCCTCTATCCCCTCCCTTC
CTCCCTCCCTCGTAAGTATACGACGTGAATCGGCGGGACTCCTTCGAGAA
TCTCAACCACTGGTTGCAAGAGGTGGAAGTTTATAGCACGGGCGGGGGTC
GTGAAATCATCAAGGTGCTGGTAGGAAACAAGGTAGATAAAGACAGGTTG
GTGCCACGGGAGGAAGCAGAGGCATGGGCACGGAGTAAAGGGATGCTGTT
CCTGGAGGCCAGCGCCAAGACAAGGACGGGGATCAAGCAGGTGTTCCAGG
AGGTGGTGCAGAAGATTCTCGATAACCCGGCTCTCTTGACGAATACCGCC
CCCGGGCGGCCACGGGTTAGCTTGCAGGCAGATGCGGGGGCGAAGGTGGG
GGGGGGTTACTGCTGTTGA

Coding sequence (CDS) from alignment at scaffold_2:658269..659487+

>mRNA_884 ID=mRNA_884|Name=jgi.p|Nanoce1779_2|627296|organism=Nannochloropsis oceanica|type=CDS|length=1854bp|location=Sequence derived from alignment at scaffold_2:658269..659487+ (Nannochloropsis oceanica)
ATGCGCGAGCCAGAGCCGTACGACCATCTTTTCAAGCTTCTGCTTATAGG
TGACGCAGGCGTGGGGAAGTCGAGCATCCTCCTCCGCTTCACGGACGACG
CCTTCGACGACCACCAGCAGTCCACCATCGGGGTAGACTTTAAGGTGAAG
ATGATAGAGGTCGGGCAAAAGAAGATCAAGATGACGATCTGGGACACGGC
GGGGCAAGAACGGTTTCGGACGTTGACCAGTTCGTACTATCGCGGGGCTC
AGGGAATTATTCTTGTATACGACGTGAATCGGCGGGACTCCTTCGAGAAT
CTCAACCACTGGTTGCAAGAGGTGGAAGTTTATAGCACGGGCGGGGGTCG
TGAAATCATCAAGGTGCTGGTAGGAAACAAGGTAGATAAAGACAGGTTGG
TGCCACGGGAGGAAGCAGAGGCATGGGCACGGAGTAAAGGGATGCTGTTC
CTGGAGGCCAGCGCCAAGACAAGGACGGGGATCAAGCAGGTGTTCCAGGA
GGTGGTGCAGAAGATTCTCGATAACCCGGCTCTCTTGACGAATACCGCCC
CCGGGCGGCCACGGGTTAGCTTGCAGGCAGATGCGGGGGCGAAGGTGGGG
GGGGGTTACTGCTGTTGAATGCGCGAGCCAGAGCCGTACGACCATCTTTT
CAAGCTTCTGCTTATAGGTGACGCAGGCGTGGGGAAGTCGAGCATCCTCC
TCCGCTTCACGGACGACGCCTTCGACGACCACCAGCAGTCCACCATCGGG
GTAGACTTTAAGGTGAAGATGATAGAGGTCGGGCAAAAGAAGATCAAGAT
GACGATCTGGGACACGGCGGGGCAAGAACGGTTTCGGACGTTGACCAGTT
CGTACTATCGCGGGGCTCAGGGAATTATTCTTGTATACGACGTGAATCGG
CGGGACTCCTTCGAGAATCTCAACCACTGGTTGCAAGAGGTGGAAGTTTA
TAGCACGGGCGGGGGTCGTGAAATCATCAAGGTGCTGGTAGGAAACAAGG
TAGATAAAGACAGGTTGGTGCCACGGGAGGAAGCAGAGGCATGGGCACGG
AGTAAAGGGATGCTGTTCCTGGAGGCCAGCGCCAAGACAAGGACGGGGAT
CAAGCAGGTGTTCCAGGAGGTGGTGCAGAAGATTCTCGATAACCCGGCTC
TCTTGACGAATACCGCCCCCGGGCGGCCACGGGTTAGCTTGCAGGCAGAT
GCGGGGGCGAAGGTGGGGGGGGGTTACTGCTGTTGAATGCGCGAGCCAGA
GCCGTACGACCATCTTTTCAAGCTTCTGCTTATAGGTGACGCAGGCGTGG
GGAAGTCGAGCATCCTCCTCCGCTTCACGGACGACGCCTTCGACGACCAC
CAGCAGTCCACCATCGGGGTAGACTTTAAGGTGAAGATGATAGAGGTCGG
GCAAAAGAAGATCAAGATGACGATCTGGGACACGGCGGGGCAAGAACGGT
TTCGGACGTTGACCAGTTCGTACTATCGCGGGGCTCAGGGAATTATTCTT
GTATACGACGTGAATCGGCGGGACTCCTTCGAGAATCTCAACCACTGGTT
GCAAGAGGTGGAAGTTTATAGCACGGGCGGGGGTCGTGAAATCATCAAGG
TGCTGGTAGGAAACAAGGTAGATAAAGACAGGTTGGTGCCACGGGAGGAA
GCAGAGGCATGGGCACGGAGTAAAGGGATGCTGTTCCTGGAGGCCAGCGC
CAAGACAAGGACGGGGATCAAGCAGGTGTTCCAGGAGGTGGTGCAGAAGA
TTCTCGATAACCCGGCTCTCTTGACGAATACCGCCCCCGGGCGGCCACGG
GTTAGCTTGCAGGCAGATGCGGGGGCGAAGGTGGGGGGGGGTTACTGCTG
TTGA

Synonyms

Publications