jgi.p|Nanoce1779_2|568835, mRNA_8839 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|568835
Unique NamemRNA_8839
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length639
Alignment locationscaffold_28:304804..305608 -

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Properties
Property NameValue
TranscriptId568921
TrackFilteredModels2
ProteinId568835
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_28supercontigscaffold_28:304804..305608 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|568835gene_8839Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|568835mRNA_8839-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8839CDS_8839Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8839 ID=mRNA_8839|Name=jgi.p|Nanoce1779_2|568835|organism=Nannochloropsis oceanica|type=mRNA|length=639bp
ATGGTGGCGCTACGCGTGCAGCGATATCTTGAGCAAGCACGCGATTTGGT
CGAACAGCGCGCGCAACGAGGTGAGGTAGAACACGACAGGGAAAAGGCTG
AAAAGGCTGCCGAGGGGGCATCGGGTTTGGTGGAGACATGCCTGCACATC
CTCTTGGAGGAAACCGACAATGCTTTGGCGGCGCCAGGCCTTGTTGGGAC
AGTGCTGGGCTTGCTCCGGCAAATAGGGGACTCAGCTTATGCCTGCTTGC
CTGATGCGTTGGAAGCTCGCTTCACGGAGGTGGTTGAGGCTCTATTGGGA
TGGACATTAGATCCTTCTTGGGTAGAGGATGCAGGAGGTCGGGAGGCGAT
CGAGGAGGCACTGCTGGCTTGGGGTGTGGGGAGTAGGCCTGGGCGTCAAT
CACTCTGGGGACGAAACCTTCCTTTGGCGAAGACTCTGCTTGGGGTCATG
CTCGGGGATATGCAGGGCTTGGTGGTCAAGTGGGAGGGAGAGGCGGAGGC
GAGAGGGGGGAGAAGCAAGGAGGAGCCACCGCGGCTTCGGAGTCTGGCTG
GTCTTTTTGCCGTCCTCCTCAGCTGTTTGCCTCCTGAGCTGGCTTTCGGG
GAGAGGGGAGGGGACGAGTGGGAGCAAGAATGGCTATGA
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protein sequence of jgi.p|Nanoce1779_2|568835

>mRNA_8839-protein ID=mRNA_8839-protein|Name=jgi.p|Nanoce1779_2|568835|organism=Nannochloropsis oceanica|type=polypeptide|length=213bp
MVALRVQRYLEQARDLVEQRAQRGEVEHDREKAEKAAEGASGLVETCLHI
LLEETDNALAAPGLVGTVLGLLRQIGDSAYACLPDALEARFTEVVEALLG
WTLDPSWVEDAGGREAIEEALLAWGVGSRPGRQSLWGRNLPLAKTLLGVM
LGDMQGLVVKWEGEAEARGGRSKEEPPRLRSLAGLFAVLLSCLPPELAFG
ERGGDEWEQEWL*
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mRNA from alignment at scaffold_28:304804..305608-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8839 ID=mRNA_8839|Name=jgi.p|Nanoce1779_2|568835|organism=Nannochloropsis oceanica|type=mRNA|length=805bp|location=Sequence derived from alignment at scaffold_28:304804..305608- (Nannochloropsis oceanica)
ATGGTGGCGCTACGCGTGCAGCGATATCTTGAGCAAGCACGCGATTTGGT
CGAACAGCGCGCGCAACGAGGTGAGGTAGAACACGACAGGGAAAAGGCTG
AAAAGGCTGCCGAGGGGGCATCGGGTTTGGTGGAGACATGCCTGCACATC
CTCTTGGAGGAAACCGACAATGCTTTGGCGGCGCCAGGCCTTGTTGGGAC
AGTGCTGGGCTTGCTCCGGCAAATAGGGGACTCAGCTTATGCCTGCTTGC
CTGATGCGTTGGAAGCTCGCTTCACGGAGGTGGTTGAGGCTCTATTGGGA
TGGACATTAGATCCTTCTTGGGTAGAGGATGCAGGAGGTCGGGAGGCGAT
CGAGGAGGCACTGCTGGCTTGGGGTGTGGGGAGTAGGCCTGGGCGTCAAT
CACTCTGGGGACGAAACCTTCCTTTGGCGAAGACTCTGCTTGGGGTCATG
CTCGGGGATATGCAGGGCTTGGTGGTCAAGTGGGAGGGAGAGGCGGAGGC
GAGAGGGGGGAGAAGCAAGGAGGAGCCACCGCGGCTTCGGAGTCTGGCTG
GTCTTTTTGCCGTCCTCCTCAGCTGTTTGCCTCCTGAGCTGGCTTTCGGG
GAGAGGGGAGGGGACGAGTGGGAGCAAGAAGTAGACCCCTGCTCGTCTGT
TTTGCCTTCGTTGGCGTCGCCTTTCGCGAGCTTGGTGATCGACTACCTCC
GCTTTCTCTGCATCCTGCTCCCTTCCAAAACGTTGCGTTTGCCCTCCTCC
CCCCCCCCCCCCCCCCTTCCTCCTCCTCTTCGTCCTCTTCTTCCAGTGGC
TATGA
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Coding sequence (CDS) from alignment at scaffold_28:304804..305608-

>mRNA_8839 ID=mRNA_8839|Name=jgi.p|Nanoce1779_2|568835|organism=Nannochloropsis oceanica|type=CDS|length=1278bp|location=Sequence derived from alignment at scaffold_28:304804..305608- (Nannochloropsis oceanica)
TGGCTATGAATGGTGGCGCTACGCGTGCAGCGATATCTTGAGCAAGCACG
CGATTTGGTCGAACAGCGCGCGCAACGAGGTGAGGTAGAACACGACAGGG
AAAAGGCTGAAAAGGCTGCCGAGGGGGCATCGGGTTTGGTGGAGACATGC
CTGCACATCCTCTTGGAGGAAACCGACAATGCTTTGGCGGCGCCAGGCCT
TGTTGGGACAGTGCTGGGCTTGCTCCGGCAAATAGGGGACTCAGCTTATG
CCTGCTTGCCTGATGCGTTGGAAGCTCGCTTCACGGAGGTGGTTGAGGCT
CTATTGGGATGGACATTAGATCCTTCTTGGGTAGAGGATGCAGGAGGTCG
GGAGGCGATCGAGGAGGCACTGCTGGCTTGGGGTGTGGGGAGTAGGCCTG
GGCGTCAATCACTCTGGGGACGAAACCTTCCTTTGGCGAAGACTCTGCTT
GGGGTCATGCTCGGGGATATGCAGGGCTTGGTGGTCAAGTGGGAGGGAGA
GGCGGAGGCGAGAGGGGGGAGAAGCAAGGAGGAGCCACCGCGGCTTCGGA
GTCTGGCTGGTCTTTTTGCCGTCCTCCTCAGCTGTTTGCCTCCTGAGCTG
GCTTTCGGGGAGAGGGGAGGGGACGAGTGGGAGCAAGAATGGCTATGAAT
GGTGGCGCTACGCGTGCAGCGATATCTTGAGCAAGCACGCGATTTGGTCG
AACAGCGCGCGCAACGAGGTGAGGTAGAACACGACAGGGAAAAGGCTGAA
AAGGCTGCCGAGGGGGCATCGGGTTTGGTGGAGACATGCCTGCACATCCT
CTTGGAGGAAACCGACAATGCTTTGGCGGCGCCAGGCCTTGTTGGGACAG
TGCTGGGCTTGCTCCGGCAAATAGGGGACTCAGCTTATGCCTGCTTGCCT
GATGCGTTGGAAGCTCGCTTCACGGAGGTGGTTGAGGCTCTATTGGGATG
GACATTAGATCCTTCTTGGGTAGAGGATGCAGGAGGTCGGGAGGCGATCG
AGGAGGCACTGCTGGCTTGGGGTGTGGGGAGTAGGCCTGGGCGTCAATCA
CTCTGGGGACGAAACCTTCCTTTGGCGAAGACTCTGCTTGGGGTCATGCT
CGGGGATATGCAGGGCTTGGTGGTCAAGTGGGAGGGAGAGGCGGAGGCGA
GAGGGGGGAGAAGCAAGGAGGAGCCACCGCGGCTTCGGAGTCTGGCTGGT
CTTTTTGCCGTCCTCCTCAGCTGTTTGCCTCCTGAGCTGGCTTTCGGGGA
GAGGGGAGGGGACGAGTGGGAGCAAGAA
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Synonyms
Publications