jgi.p|Nanoce1779_2|604208, mRNA_8838 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|604208
Unique Name	mRNA_8838
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1288
Alignment location	scaffold_28:303576..304863 +

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Properties


Property Name	Value
TranscriptId	604294
Track	FilteredModels2
ProteinId	604208

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_28	supercontig	scaffold_28:303576..304863 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|604208	gene_8838	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|604208	mRNA_8838-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8838	CDS_8838	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_28:303576..304863+
coding sequence from alignment at scaffold_28:303576..304863+

mRNA sequence

>mRNA_8838 ID=mRNA_8838|Name=jgi.p|Nanoce1779_2|604208|organism=Nannochloropsis oceanica|type=mRNA|length=1288bp
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAAGGAGGAGGAGGAGA
AGGAGGAGGAGGAGGAGGAAGAAGAATAGGAGCAGAACGCCGATGTAGTG
GTCAAGACCTGGCCTAACACCTCATCGACCATCGACAACGCCGGTGGCAA
GGATGGAGAAGGGAGAGAGGATACTGGTGAGGTACCGCGGACAAAGGCAA
GTGGTAAAGGCAGGACCATCTCCAGCAGCTGGGGCAGAAAGTCTCCTTTT
TGGGAGCGGGGACATGTACGCAGCAGGCGCATTGCTAGCTCTATGAAAGC
ACCTTGCAAGGCCGAGGAGAAGGGAACCATGGCAGAGCAAAAGGATGTAG
ATGAGGAGGATGAGGACGGGGACGTGGAATAAGGAGAAGGCATGAAATTT
AAGCACCGCAATGCCCGACAGCTCGCCTCCCTAGCCAGTAATTGTGCCCT
GGCCCTGGCCAGCCATTGTCCCCGCTTCCCACCCTCTTCTTCCTTCTCTG
CATTTTTTATCACGTCCTTGTCTTTGCGTGGAGCAAACACCACCGCCATC
GCAGCACTCAGAGCCCACAGATCAACTATCACCACCCCCTCTTCCCTGCC
TACCTCCATTTCCTTTTCGACTTCTTCCGCGAGCCATGTAAAAGGGTCGA
CATCCTCCTCCTCCCGGCAATTTCCTCCTCTCTCCTTGGACTCCTCCTCC
TCGTCTACACTCCGCAAGGCAAGCTCGGCGAAGTTCCGGGCCCATAGCGT
ACGCACATTCGTCATGGAGGAGACGGAGGAGGAGGATGAGGGAGGAAAAG
AGGAGGCGGGAGAGGAGGCATCGGCCGCCAGACATCGCTTCCACACGTGC
AAGCAAGAGCTGGGAATGAAGGAGGTGGAGTAGGAAGAAGGAGACAGGGA
CGAGGGCCTCATTCCTAGCACGGTCCGCAACGTGGTCTTGTCCAATGCCA
GCAGGGAAGGAGACGGAGGGGGAATGAGGCGTGTGAGTAGGTGCAGATGT
GCTGTGAGCCCTTGTTCAATCCACGCACGGGGCCAGGTGTCAGCAGAGGC
CTCAACGTCATGGCCGCCCAAGCAAAAATGAGCTCCCAGACAATAAGCTT
CAAGAATAAACGGGGCCGTTAAACGGGAGGAGAAGGGGGTGGAGAAGGCG
GCAAAGGCGACGGGAGAAAGTGTTTCGGCCACCTTGAGCAGGCACCGCAT
CAAGAAAACAAGTAAACCAGTCTTATTGTCATAGCCACTGGAAGAAGAGG
ACGAAGAGGAGGAGGAAGGGGGGGGGGGGGGGGGGAGG

protein sequence of jgi.p|Nanoce1779_2|604208

>mRNA_8838-protein ID=mRNA_8838-protein|Name=jgi.p|Nanoce1779_2|604208|organism=Nannochloropsis oceanica|type=polypeptide|length=164bp
MKFKHRNARQLASLASNCALALASHCPRFPPSSSFSAFFITSLSLRGANT
TAIAALRAHRSTITTPSSLPTSISFSTSSASHVKGSTSSSSRQFPPLSLD
SSSSSTLRKASSAKFRAHSVRTFVMEETEEEDEGGKEEAGEEASAARHRF
HTCKQELGMKEVE*

mRNA from alignment at scaffold_28:303576..304863+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8838 ID=mRNA_8838|Name=jgi.p|Nanoce1779_2|604208|organism=Nannochloropsis oceanica|type=mRNA|length=1288bp|location=Sequence derived from alignment at scaffold_28:303576..304863+ (Nannochloropsis oceanica)
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAAGGAGGAGGAGGAGA
AGGAGGAGGAGGAGGAGGAAGAAGAATAGGAGCAGAACGCCGATGTAGTG
GTCAAGACCTGGCCTAACACCTCATCGACCATCGACAACGCCGGTGGCAA
GGATGGAGAAGGGAGAGAGGATACTGGTGAGGTACCGCGGACAAAGGCAA
GTGGTAAAGGCAGGACCATCTCCAGCAGCTGGGGCAGAAAGTCTCCTTTT
TGGGAGCGGGGACATGTACGCAGCAGGCGCATTGCTAGCTCTATGAAAGC
ACCTTGCAAGGCCGAGGAGAAGGGAACCATGGCAGAGCAAAAGGATGTAG
ATGAGGAGGATGAGGACGGGGACGTGGAATAAGGAGAAGGCATGAAATTT
AAGCACCGCAATGCCCGACAGCTCGCCTCCCTAGCCAGTAATTGTGCCCT
GGCCCTGGCCAGCCATTGTCCCCGCTTCCCACCCTCTTCTTCCTTCTCTG
CATTTTTTATCACGTCCTTGTCTTTGCGTGGAGCAAACACCACCGCCATC
GCAGCACTCAGAGCCCACAGATCAACTATCACCACCCCCTCTTCCCTGCC
TACCTCCATTTCCTTTTCGACTTCTTCCGCGAGCCATGTAAAAGGGTCGA
CATCCTCCTCCTCCCGGCAATTTCCTCCTCTCTCCTTGGACTCCTCCTCC
TCGTCTACACTCCGCAAGGCAAGCTCGGCGAAGTTCCGGGCCCATAGCGT
ACGCACATTCGTCATGGAGGAGACGGAGGAGGAGGATGAGGGAGGAAAAG
AGGAGGCGGGAGAGGAGGCATCGGCCGCCAGACATCGCTTCCACACGTGC
AAGCAAGAGCTGGGAATGAAGGAGGTGGAGTAGGAAGAAGGAGACAGGGA
CGAGGGCCTCATTCCTAGCACGGTCCGCAACGTGGTCTTGTCCAATGCCA
GCAGGGAAGGAGACGGAGGGGGAATGAGGCGTGTGAGTAGGTGCAGATGT
GCTGTGAGCCCTTGTTCAATCCACGCACGGGGCCAGGTGTCAGCAGAGGC
CTCAACGTCATGGCCGCCCAAGCAAAAATGAGCTCCCAGACAATAAGCTT
CAAGAATAAACGGGGCCGTTAAACGGGAGGAGAAGGGGGTGGAGAAGGCG
GCAAAGGCGACGGGAGAAAGTGTTTCGGCCACCTTGAGCAGGCACCGCAT
CAAGAAAACAAGTAAACCAGTCTTATTGTCATAGCCACTGGAAGAAGAGG
ACGAAGAGGAGGAGGAAGGGGGGGGGGGGGGGGGGAGG

Coding sequence (CDS) from alignment at scaffold_28:303576..304863+

>mRNA_8838 ID=mRNA_8838|Name=jgi.p|Nanoce1779_2|604208|organism=Nannochloropsis oceanica|type=CDS|length=492bp|location=Sequence derived from alignment at scaffold_28:303576..304863+ (Nannochloropsis oceanica)
ATGAAATTTAAGCACCGCAATGCCCGACAGCTCGCCTCCCTAGCCAGTAA
TTGTGCCCTGGCCCTGGCCAGCCATTGTCCCCGCTTCCCACCCTCTTCTT
CCTTCTCTGCATTTTTTATCACGTCCTTGTCTTTGCGTGGAGCAAACACC
ACCGCCATCGCAGCACTCAGAGCCCACAGATCAACTATCACCACCCCCTC
TTCCCTGCCTACCTCCATTTCCTTTTCGACTTCTTCCGCGAGCCATGTAA
AAGGGTCGACATCCTCCTCCTCCCGGCAATTTCCTCCTCTCTCCTTGGAC
TCCTCCTCCTCGTCTACACTCCGCAAGGCAAGCTCGGCGAAGTTCCGGGC
CCATAGCGTACGCACATTCGTCATGGAGGAGACGGAGGAGGAGGATGAGG
GAGGAAAAGAGGAGGCGGGAGAGGAGGCATCGGCCGCCAGACATCGCTTC
CACACGTGCAAGCAAGAGCTGGGAATGAAGGAGGTGGAGTAG

Synonyms

Publications