jgi.p|Nanoce1779_2|604205, mRNA_8837 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|604205
Unique Name	mRNA_8837
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2036
Alignment location	scaffold_28:297600..299635 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	604291
Track	FilteredModels2
ProteinId	604205

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_28	supercontig	scaffold_28:297600..299635 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|604205	gene_8837	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|604205	mRNA_8837-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8837	CDS_8837	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_28:297600..299635+
coding sequence from alignment at scaffold_28:297600..299635+

mRNA sequence

>mRNA_8837 ID=mRNA_8837|Name=jgi.p|Nanoce1779_2|604205|organism=Nannochloropsis oceanica|type=mRNA|length=2036bp
TGGCCCTTCCTCTCTCCCCCCCTGATGAAAGAAGGTGAGATGGGACAAAC
CGGGCATTTCCAAATTCTGCAGACTTCCCTGGGCCAGGAGCGACAGCAGC
TGTGGAGCCACTGCCTCCGCCTTCAGGCGCCGTCGTTGCTCCTGCTGATG
TTGCCTCGAACCTCCCTTTCCTCCCTTCTTTCCTGCTCCTCTTCCTCCTT
CTCCAGCCACAGCTTTCATTAGGTCCCTCTGAAACTTCTCCAGAATGGGC
CACACATGCGTGACAGGGTCCATAGCTGCAGCTGCATCAGGGGCGGCCCG
CAGTAAGGATGAGACCTGCTTTTCGATCCGCTCCCGCCAGGCTTCGGCGA
AGGTGCGGTTGTGTTGGGAGGCAGAGATCAAGGAAGAGGAGGAAGATGAA
GACAAATGTTGGTCGTGCTGTAACCCATCCTTCCACCCACCCTCTCCAAC
TCCGCACCCTGTTTCGCTCGCCAACACCTGCACCTCCAGAAACAGCGGCA
ACAGCACTGCCGCATACCTCTCTCGTGCAATCCTCTCCTTCTCCTCCTCC
GACAAGGTGGGGTTCTGCGCCAGTCGCTGCCCCTCTCTACTCAATCCTCG
CAGGCGACTCTGCAGCCCCTTCACGTGCCATCGTTCGCTCACCAATGCCA
GCCACCGCTCGTCCCACAGAAACCCCAGCCTGTCCATGGCCTGGAAGAAA
ATCCGAAGGTCTTGCACGAGAGCAGGGTGAGTGGTGCTTAGGAGGCTTTT
GAGACGATGCCAACGAGCGTGTGCAGCCGCCAGGGCCATCGTCTTAGTGA
GGGAAAAGGTCGAAGGAGGAATAGTAGGGTCGACGGAGGTGGCGTAGGAA
GAGGATGACGAGGTTGAGGACGAGGACGATGCTTTTGCTTGGTCGAGTTC
ATCACAGCCCGCTACTAGGGTCCAGGCCATTTCTTGAGAGGCAGAAAAGA
CAAGGCGTTGAAGAAGCGGGAAGAGGGCTTGGAAAGCAGCCTCGGGGAGG
ACGGCCAGACGGGCAAGGAGCTGTGGAGCAATCGCTTGCCATGGGCCTAG
AGGGGAAGCGGCCAAGGAGAAACGGAATGAAATGGACGGGGAAGATGGCA
AGTCTGCGAGCATCTTGACAACACGCAAGGCCGACAAGACCAGCACGGCC
GATTCCCGCATGTCTGCTTCTCCCTCTCTCTCGCCTCCGCCAAGCTGTAG
ATGTCGGCAGTAGGCCTCCGTAGCCCCCTCCCGTGCCTGTTCTCTTGCTG
CTCGTCGTTCCCGTCGCAACCCCGCGACTACTTCTTGCGCCCTCGCCATC
AATTTCTTGTTTCCTGCCCCGCCCCGACACCCCACTCTTTCTACCGCCGA
CACTGTCAAAATCCTCTCTTCTCTACCACCTTCCCCCCCATCTTCCTCTG
CAAAAACTGCCCGCACCAGCAATGCCAAGACGGCTTCTCGTGTGGCTGCT
GTGGGTTCTCTCTCGCTTTCCCACCTAGCCAGCTCCTCCGCCAACCCCTC
AAGCTCTGATGTCGCGTACCTATTCATCTCCCATGCCGACGACTGCTCTT
TTTGCAGGTCACTGTTCAACGCCATGACACGCTGATACATCCAATCGCCC
CACAGTCGCCATGCCTTACCTCCCTGTCTCCCCCGTGGTTGCACCCCGGT
AGCCGCTAACTCCAAACATCGGCCTGCGAGATCCTCGGCGTTTCTTATCG
CCTGAGTGAGAAAAAGTGAGACGAACAAAGAAGATGTATGGTCACCAAGT
AGAGATGAAGGCTGCTGTTGTTGCTGTTGTTGCTGCTGCTCACAATAAGG
GAGGGAGGGGAAGGCGGAGAGGGAGGGGGAGAGGAAACTATCAAGCCAGG
AAGAGGAGGAAGACACAGAAACCTGACCCGCCAAAAGAGATGAGGAGGAC
GAGATAGATGAGGAAAAAGAGGAATAGGACGAAAACAAGGAAGTGTAATG
CTGCTGCTGCTGCTGCTTCTGAAAGTGGTGGTACTGCTGTAGCCATTGTG
CTGCGCGAACCAAACATCGATAGCCCCAATGCCGTC

protein sequence of jgi.p|Nanoce1779_2|604205

>mRNA_8837-protein ID=mRNA_8837-protein|Name=jgi.p|Nanoce1779_2|604205|organism=Nannochloropsis oceanica|type=polypeptide|length=162bp
MGHTCVTGSIAAAASGAARSKDETCFSIRSRQASAKVRLCWEAEIKEEEE
DEDKCWSCCNPSFHPPSPTPHPVSLANTCTSRNSGNSTAAYLSRAILSFS
SSDKVGFCASRCPSLLNPRRRLCSPFTCHRSLTNASHRSSHRNPSLSMAW
KKIRRSCTRAG*

mRNA from alignment at scaffold_28:297600..299635+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8837 ID=mRNA_8837|Name=jgi.p|Nanoce1779_2|604205|organism=Nannochloropsis oceanica|type=mRNA|length=2036bp|location=Sequence derived from alignment at scaffold_28:297600..299635+ (Nannochloropsis oceanica)
TGGCCCTTCCTCTCTCCCCCCCTGATGAAAGAAGGTGAGATGGGACAAAC
CGGGCATTTCCAAATTCTGCAGACTTCCCTGGGCCAGGAGCGACAGCAGC
TGTGGAGCCACTGCCTCCGCCTTCAGGCGCCGTCGTTGCTCCTGCTGATG
TTGCCTCGAACCTCCCTTTCCTCCCTTCTTTCCTGCTCCTCTTCCTCCTT
CTCCAGCCACAGCTTTCATTAGGTCCCTCTGAAACTTCTCCAGAATGGGC
CACACATGCGTGACAGGGTCCATAGCTGCAGCTGCATCAGGGGCGGCCCG
CAGTAAGGATGAGACCTGCTTTTCGATCCGCTCCCGCCAGGCTTCGGCGA
AGGTGCGGTTGTGTTGGGAGGCAGAGATCAAGGAAGAGGAGGAAGATGAA
GACAAATGTTGGTCGTGCTGTAACCCATCCTTCCACCCACCCTCTCCAAC
TCCGCACCCTGTTTCGCTCGCCAACACCTGCACCTCCAGAAACAGCGGCA
ACAGCACTGCCGCATACCTCTCTCGTGCAATCCTCTCCTTCTCCTCCTCC
GACAAGGTGGGGTTCTGCGCCAGTCGCTGCCCCTCTCTACTCAATCCTCG
CAGGCGACTCTGCAGCCCCTTCACGTGCCATCGTTCGCTCACCAATGCCA
GCCACCGCTCGTCCCACAGAAACCCCAGCCTGTCCATGGCCTGGAAGAAA
ATCCGAAGGTCTTGCACGAGAGCAGGGTGAGTGGTGCTTAGGAGGCTTTT
GAGACGATGCCAACGAGCGTGTGCAGCCGCCAGGGCCATCGTCTTAGTGA
GGGAAAAGGTCGAAGGAGGAATAGTAGGGTCGACGGAGGTGGCGTAGGAA
GAGGATGACGAGGTTGAGGACGAGGACGATGCTTTTGCTTGGTCGAGTTC
ATCACAGCCCGCTACTAGGGTCCAGGCCATTTCTTGAGAGGCAGAAAAGA
CAAGGCGTTGAAGAAGCGGGAAGAGGGCTTGGAAAGCAGCCTCGGGGAGG
ACGGCCAGACGGGCAAGGAGCTGTGGAGCAATCGCTTGCCATGGGCCTAG
AGGGGAAGCGGCCAAGGAGAAACGGAATGAAATGGACGGGGAAGATGGCA
AGTCTGCGAGCATCTTGACAACACGCAAGGCCGACAAGACCAGCACGGCC
GATTCCCGCATGTCTGCTTCTCCCTCTCTCTCGCCTCCGCCAAGCTGTAG
ATGTCGGCAGTAGGCCTCCGTAGCCCCCTCCCGTGCCTGTTCTCTTGCTG
CTCGTCGTTCCCGTCGCAACCCCGCGACTACTTCTTGCGCCCTCGCCATC
AATTTCTTGTTTCCTGCCCCGCCCCGACACCCCACTCTTTCTACCGCCGA
CACTGTCAAAATCCTCTCTTCTCTACCACCTTCCCCCCCATCTTCCTCTG
CAAAAACTGCCCGCACCAGCAATGCCAAGACGGCTTCTCGTGTGGCTGCT
GTGGGTTCTCTCTCGCTTTCCCACCTAGCCAGCTCCTCCGCCAACCCCTC
AAGCTCTGATGTCGCGTACCTATTCATCTCCCATGCCGACGACTGCTCTT
TTTGCAGGTCACTGTTCAACGCCATGACACGCTGATACATCCAATCGCCC
CACAGTCGCCATGCCTTACCTCCCTGTCTCCCCCGTGGTTGCACCCCGGT
AGCCGCTAACTCCAAACATCGGCCTGCGAGATCCTCGGCGTTTCTTATCG
CCTGAGTGAGAAAAAGTGAGACGAACAAAGAAGATGTATGGTCACCAAGT
AGAGATGAAGGCTGCTGTTGTTGCTGTTGTTGCTGCTGCTCACAATAAGG
GAGGGAGGGGAAGGCGGAGAGGGAGGGGGAGAGGAAACTATCAAGCCAGG
AAGAGGAGGAAGACACAGAAACCTGACCCGCCAAAAGAGATGAGGAGGAC
GAGATAGATGAGGAAAAAGAGGAATAGGACGAAAACAAGGAAGTGTAATG
CTGCTGCTGCTGCTGCTTCTGAAAGTGGTGGTACTGCTGTAGCCATTGTG
CTGCGCGAACCAAACATCGATAGCCCCAATGCCGTC

Coding sequence (CDS) from alignment at scaffold_28:297600..299635+

>mRNA_8837 ID=mRNA_8837|Name=jgi.p|Nanoce1779_2|604205|organism=Nannochloropsis oceanica|type=CDS|length=486bp|location=Sequence derived from alignment at scaffold_28:297600..299635+ (Nannochloropsis oceanica)
ATGGGCCACACATGCGTGACAGGGTCCATAGCTGCAGCTGCATCAGGGGC
GGCCCGCAGTAAGGATGAGACCTGCTTTTCGATCCGCTCCCGCCAGGCTT
CGGCGAAGGTGCGGTTGTGTTGGGAGGCAGAGATCAAGGAAGAGGAGGAA
GATGAAGACAAATGTTGGTCGTGCTGTAACCCATCCTTCCACCCACCCTC
TCCAACTCCGCACCCTGTTTCGCTCGCCAACACCTGCACCTCCAGAAACA
GCGGCAACAGCACTGCCGCATACCTCTCTCGTGCAATCCTCTCCTTCTCC
TCCTCCGACAAGGTGGGGTTCTGCGCCAGTCGCTGCCCCTCTCTACTCAA
TCCTCGCAGGCGACTCTGCAGCCCCTTCACGTGCCATCGTTCGCTCACCA
ATGCCAGCCACCGCTCGTCCCACAGAAACCCCAGCCTGTCCATGGCCTGG
AAGAAAATCCGAAGGTCTTGCACGAGAGCAGGGTGA

Synonyms

Publications