jgi.p|Nanoce1779_2|532937, mRNA_8835 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|532937
Unique NamemRNA_8835
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length510
Alignment locationscaffold_28:290519..291028 +

Link to JBrowse

Properties
Property NameValue
TranscriptId533023
TrackFilteredModels2
ProteinId532937
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_28supercontigscaffold_28:290519..291028 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|532937gene_8835Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|532937mRNA_8835-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8835CDS_8835Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8835 ID=mRNA_8835|Name=jgi.p|Nanoce1779_2|532937|organism=Nannochloropsis oceanica|type=mRNA|length=510bp
ATGTTCACACTCAAGAGTACCGGAGCATGTACATGCCGCCTCTCAAGGCG
TGGCCAATGGCTCGCCGTTCGCTGCTTCTTTCACTGCCATCACCACTGGA
CCAGGGTCGCGTACGGGAAGGGCCTTTTCATGGCGGTGGCTTTTTGCAGA
GCAGTCATGTCAAGTCCCGACGCCATCATCTGGACACTTGGATATAGCGC
ATCGAATAATTCTTGGACAGGGATCGCATATGGGAACGATCTTTTCGTGG
CAGTTGCTTTTACAGGTTCGGGTGATCGTGCCATGTGCACGGCACCCTCT
CCCCCTGACATCCACACCCATTCCCCCGACACACCCACATCCACACCCAT
CCACATTGACACAGTGATACGTTTGGTAAATCACATTTCTGTATTTTTTA
ATTCAAAACAGAAGCAACAACAATGGAAAACGATTTTTAGGATAGGGTAC
GCAATTGGCCTGAGCTTAAGAAAAGTACTCAGCGGCTTACCTTCAATGCA
CACGCTTTGA
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protein sequence of jgi.p|Nanoce1779_2|532937

>mRNA_8835-protein ID=mRNA_8835-protein|Name=jgi.p|Nanoce1779_2|532937|organism=Nannochloropsis oceanica|type=polypeptide|length=170bp
MFTLKSTGACTCRLSRRGQWLAVRCFFHCHHHWTRVAYGKGLFMAVAFCR
AVMSSPDAIIWTLGYSASNNSWTGIAYGNDLFVAVAFTGSGDRAMCTAPS
PPDIHTHSPDTPTSTPIHIDTVIRLVNHISVFFNSKQKQQQWKTIFRIGY
AIGLSLRKVLSGLPSMHTL*
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mRNA from alignment at scaffold_28:290519..291028+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8835 ID=mRNA_8835|Name=jgi.p|Nanoce1779_2|532937|organism=Nannochloropsis oceanica|type=mRNA|length=510bp|location=Sequence derived from alignment at scaffold_28:290519..291028+ (Nannochloropsis oceanica)
ATGTTCACACTCAAGAGTACCGGAGCATGTACATGCCGCCTCTCAAGGCG
TGGCCAATGGCTCGCCGTTCGCTGCTTCTTTCACTGCCATCACCACTGGA
CCAGGGTCGCGTACGGGAAGGGCCTTTTCATGGCGGTGGCTTTTTGCAGA
GCAGTCATGTCAAGTCCCGACGCCATCATCTGGACACTTGGATATAGCGC
ATCGAATAATTCTTGGACAGGGATCGCATATGGGAACGATCTTTTCGTGG
CAGTTGCTTTTACAGGTTCGGGTGATCGTGCCATGTGCACGGCACCCTCT
CCCCCTGACATCCACACCCATTCCCCCGACACACCCACATCCACACCCAT
CCACATTGACACAGTGATACGTTTGGTAAATCACATTTCTGTATTTTTTA
ATTCAAAACAGAAGCAACAACAATGGAAAACGATTTTTAGGATAGGGTAC
GCAATTGGCCTGAGCTTAAGAAAAGTACTCAGCGGCTTACCTTCAATGCA
CACGCTTTGA
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Coding sequence (CDS) from alignment at scaffold_28:290519..291028+

>mRNA_8835 ID=mRNA_8835|Name=jgi.p|Nanoce1779_2|532937|organism=Nannochloropsis oceanica|type=CDS|length=510bp|location=Sequence derived from alignment at scaffold_28:290519..291028+ (Nannochloropsis oceanica)
ATGTTCACACTCAAGAGTACCGGAGCATGTACATGCCGCCTCTCAAGGCG
TGGCCAATGGCTCGCCGTTCGCTGCTTCTTTCACTGCCATCACCACTGGA
CCAGGGTCGCGTACGGGAAGGGCCTTTTCATGGCGGTGGCTTTTTGCAGA
GCAGTCATGTCAAGTCCCGACGCCATCATCTGGACACTTGGATATAGCGC
ATCGAATAATTCTTGGACAGGGATCGCATATGGGAACGATCTTTTCGTGG
CAGTTGCTTTTACAGGTTCGGGTGATCGTGCCATGTGCACGGCACCCTCT
CCCCCTGACATCCACACCCATTCCCCCGACACACCCACATCCACACCCAT
CCACATTGACACAGTGATACGTTTGGTAAATCACATTTCTGTATTTTTTA
ATTCAAAACAGAAGCAACAACAATGGAAAACGATTTTTAGGATAGGGTAC
GCAATTGGCCTGAGCTTAAGAAAAGTACTCAGCGGCTTACCTTCAATGCA
CACGCTTTGA
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Synonyms
Publications