jgi.p|Nanoce1779_2|604203, mRNA_8834 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|604203
Unique NamemRNA_8834
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1008
Alignment locationscaffold_28:289113..290199 +

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Properties
Property NameValue
TranscriptId604289
TrackFilteredModels2
ProteinId604203
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_28supercontigscaffold_28:289113..290199 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|604203gene_8834Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|604203mRNA_8834-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8834CDS_8834Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8834 ID=mRNA_8834|Name=jgi.p|Nanoce1779_2|604203|organism=Nannochloropsis oceanica|type=mRNA|length=1008bp
GGGGGGGGGGGAAAGAGGAGATGAAAAAACTATTCCTCCTACATCTGCTC
GGAGGGATGCTCCCTTCCTATACGAGCACTATTATCCCTTCTTCAATTTT
AATTGAAATATATTTACATCCAGATCTACTCCTTGATTTGCCTTTGGAGG
CCTTGGTGTCTTGTATTGAACTATTTATGCACAGAGGCCAGGTGACACTC
TCCTCGCCCACTTCCCGCTTCAGCTTCCCCAACATTCCCTTGCACGACTC
GCCACCATCCGTAGGCTTTGTTCCTATTTGTGGGGTTCGGGCTCGACCTG
GGCAACGTTTTCGCCCTCTTTTGGTATTGAACCGACGCGGCAGTAGACAT
TTCTAAATCCTGTGCATATCTGTGGATGTGTGGATGGGTGTTGGCGTGGG
GACGTGTAACTGTGAGGGAAGCAGTGGGCAAGGCAAGTGCGAATGCTACT
CCAGGGAAACGGCACATACGCTTTTCCCCAATGTCCCTTTTCGCTCCTCT
GTCCCCACGGTGCTGTCTCCACAGGACCGAGGATTGATAGCACTTATTAA
ATTATGAATATGTGTGTCTGATTTTGTATGTGGGCAGGCGAGTGTGGTGG
TGTGTCGACGTGTGGGTGTAGCGGTGAGGGAAGCAGCGTGTGGAGGTTGT
TGTGTGGGTCGGAGGGATGGGATAATCACATTTCCTGCCAGGGCCTGTCA
TATGATTTTGTGTGTGTGGTCCAGCACATGTCGTTCGTCTTTTGGTCACT
CAATACTATACGTACAGCCGTTTGTTAGGGCCTTTATGGATGAAGATTCA
CGTGCCCCGAAAAACCAAAAAGAAGGAAAGAGGTTCGGAGAGCACTTAAG
GCTCTCTCGATGTTCGTCACGTGCAACTGCTGCTGCGTTCCGGTGTTTGA
ATGAATTGGGACCATGGACAGTTGCTCGAAGACGCTATCCCATATGGGCG
ACATGAAACCATGTGATTGATTGATGGCTGTGTAGCATCGTCTTTGTTGG
TTAGAGGG
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protein sequence of jgi.p|Nanoce1779_2|604203

>mRNA_8834-protein ID=mRNA_8834-protein|Name=jgi.p|Nanoce1779_2|604203|organism=Nannochloropsis oceanica|type=polypeptide|length=112bp
MKKLFLLHLLGGMLPSYTSTIIPSSILIEIYLHPDLLLDLPLEALVSCIE
LFMHRGQVTLSSPTSRFSFPNIPLHDSPPSVGFVPICGVRARPGQRFRPL
LVLNRRGSRHF*
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mRNA from alignment at scaffold_28:289113..290199+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8834 ID=mRNA_8834|Name=jgi.p|Nanoce1779_2|604203|organism=Nannochloropsis oceanica|type=mRNA|length=1087bp|location=Sequence derived from alignment at scaffold_28:289113..290199+ (Nannochloropsis oceanica)
GGGGGGGGGGGAAAGAGGAGATGAAAAAACTATTCCTCCTACATCTGCTC
GGAGGGATGCTCCCTTCCTATACGAGCACTATTATCCCTTCTTCAATTTT
AATTGAAATATATTTACATCCAGATCTACTCCTTGATTTGCCTTTGGAGG
CCTTGGTGTCTTGTATTGAACTATTTATGCACAGAGGCCAGGTGACACTC
TCCTCGCCCACTTCCCGCTTCAGGTGTGAGTCAACCCTTGCCCATGAGAC
CATTGATTATCCTCCTTTTTTTCTCACTTTCGACCTCCTTCGGCGACCAT
AGCTTCCCCAACATTCCCTTGCACGACTCGCCACCATCCGTAGGCTTTGT
TCCTATTTGTGGGGTTCGGGCTCGACCTGGGCAACGTTTTCGCCCTCTTT
TGGTATTGAACCGACGCGGCAGTAGACATTTCTAAATCCTGTGCATATCT
GTGGATGTGTGGATGGGTGTTGGCGTGGGGACGTGTAACTGTGAGGGAAG
CAGTGGGCAAGGCAAGTGCGAATGCTACTCCAGGGAAACGGCACATACGC
TTTTCCCCAATGTCCCTTTTCGCTCCTCTGTCCCCACGGTGCTGTCTCCA
CAGGACCGAGGATTGATAGCACTTATTAAATTATGAATATGTGTGTCTGA
TTTTGTATGTGGGCAGGCGAGTGTGGTGGTGTGTCGACGTGTGGGTGTAG
CGGTGAGGGAAGCAGCGTGTGGAGGTTGTTGTGTGGGTCGGAGGGATGGG
ATAATCACATTTCCTGCCAGGGCCTGTCATATGATTTTGTGTGTGTGGTC
CAGCACATGTCGTTCGTCTTTTGGTCACTCAATACTATACGTACAGCCGT
TTGTTAGGGCCTTTATGGATGAAGATTCACGTGCCCCGAAAAACCAAAAA
GAAGGAAAGAGGTTCGGAGAGCACTTAAGGCTCTCTCGATGTTCGTCACG
TGCAACTGCTGCTGCGTTCCGGTGTTTGAATGAATTGGGACCATGGACAG
TTGCTCGAAGACGCTATCCCATATGGGCGACATGAAACCATGTGATTGAT
TGATGGCTGTGTAGCATCGTCTTTGTTGGTTAGAGGG
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Coding sequence (CDS) from alignment at scaffold_28:289113..290199+

>mRNA_8834 ID=mRNA_8834|Name=jgi.p|Nanoce1779_2|604203|organism=Nannochloropsis oceanica|type=CDS|length=672bp|location=Sequence derived from alignment at scaffold_28:289113..290199+ (Nannochloropsis oceanica)
ATGAAAAAACTATTCCTCCTACATCTGCTCGGAGGGATGCTCCCTTCCTA
TACGAGCACTATTATCCCTTCTTCAATTTTAATTGAAATATATTTACATC
CAGATCTACTCCTTGATTTGCCTTTGGAGGCCTTGGTGTCTTGTATTGAA
CTATTTATGCACAGAGGCCAGGTGACACTCTCCTCGCCCACTTCCCGCTT
CAGCTTCCCCAACATTCCCTTGCACGACTCGCCACCATCCGTAGGCTTTG
TTCCTATTTGTGGGGTTCGGGCTCGACCTGGGCAACGTTTTCGCCCTCTT
TTGGTATTGAACCGACGCGGCAGTAGACATTTCTAAATGAAAAAACTATT
CCTCCTACATCTGCTCGGAGGGATGCTCCCTTCCTATACGAGCACTATTA
TCCCTTCTTCAATTTTAATTGAAATATATTTACATCCAGATCTACTCCTT
GATTTGCCTTTGGAGGCCTTGGTGTCTTGTATTGAACTATTTATGCACAG
AGGCCAGGTGACACTCTCCTCGCCCACTTCCCGCTTCAGCTTCCCCAACA
TTCCCTTGCACGACTCGCCACCATCCGTAGGCTTTGTTCCTATTTGTGGG
GTTCGGGCTCGACCTGGGCAACGTTTTCGCCCTCTTTTGGTATTGAACCG
ACGCGGCAGTAGACATTTCTAA
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Synonyms
Publications