jgi.p|Nanoce1779_2|604197, mRNA_8833 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|604197
Unique NamemRNA_8833
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1644
Alignment locationscaffold_28:286641..288284 -

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Properties
Property NameValue
TranscriptId604283
TrackFilteredModels2
ProteinId604197
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_28supercontigscaffold_28:286641..288284 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|604197gene_8833Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|604197mRNA_8833-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8833CDS_8833Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8833 ID=mRNA_8833|Name=jgi.p|Nanoce1779_2|604197|organism=Nannochloropsis oceanica|type=mRNA|length=1644bp
GAGAAGGAATGTGGAGAGATCGCTCCTGATATATTTGGAAAGCGCGCGCT
TGCCATGAAGAAGAAGATCGATGGCATCCGGGGGGGAATTGCGGCGTTGG
AGAGAGAAGCATTGCGAGAGGAGAAGGAGGTGGTTCGGGAAAAGAGTAGG
AGCATGCGGCGGAAGTTTAAGAAAGTTACCAAGGCTGGGTATCGCGCAAA
TGCGAGAGCCATCAATATGGTCATGTGTGCGCGTGAATGGCTGCCTTATA
AATATAGGTGTGCAAGAAAAGGTAAATAACGGTTTGCCTGCTTGCCGCAC
CAGAGGGAGAACTTTTTCCTTCCGTCTTTTAGTCATTCACACCACCTCCT
ACACCACTCTCTGTACACGCCAACAGACAAAAGTGGGGTGAAGGCGCGTC
ATAGACTCTCTGGACTCTGCATGCTCCCTCGCGCTCCCCAGGTTTGCCGC
TGCATCGCTGGTGCTTCTGTGCCAATTCAAAAATGCCAAGTTCCCATCCC
CACCACCTCCTCTTCTCGTTCTCATCAATCTACGATCGCTTGACGCCTTC
AAAAACTTCTAGCTGGGGCCGAGGAGCAATTTCCGGCCGGCGACAAGAAT
TGACGTTCCTTGGTGGCATGACAATTGGGATCGGTCTGGCCACCATATTT
CAAATTATGTTCCTTCTCACGGCCAGTCGCGCCCCTACCGCCGACGAGGA
CACTGCTGCCGCGGCCCTTCCCCGGCAACCTCGATCCTCTTCTCTGCGTT
CCTTAATATCCTTTGCCTTTTCGTCTAGTTACTCTCGTGGTTCCTCCACC
TCCACGGGGAAGCGGCCCAAGCTCCTCCTTTTTGGGGACAGCTTAACCCA
ACGTGGCTTCGAGGGTCCTGGACAAGGGTGGGCAGCTGGTCTGGCCCACA
CCTATGGTCGCCGTGCAGACGTCGTGAATCGGGGATTTTCGGGGTACACG
TCCAAGTGGTGTGCCCTCATGTTGCCCACCCTTTTCCCGGCCGATGACCC
CGCGTGGGAAGTACCTCTGCTGGCGGTGGTGTTTTTGGGTGCCAACGACG
CAGCCTTGCCCACCCGTGAGCAGCATGTGACAGTCCACGAATATCAACAG
TATTTGCGGTGTATCGTGGCCTACTTGCGAAACCGACGACGGTTGGACGG
CAAGGGGACGCAGATCTTGCTCCTGACCCCGCCGCCCGTGGATGAGGACA
GGTGGGAGGCGCATTGCCTGGCACGAGGGCGGGAGCTGGATAGAAAGAAT
GAAGTGACACGGCTATACGCCCAGGCATGCTTGGGGGTTGGAAAGACGAT
GGACGTGCCAGTGGTGGACGTGTGGACGCTGCTGGGAGGAGCAGACCTGA
CTGAGGTAGCGCCCAACTTGGGGGACGGGCTGCACCTGTCGCCGCAAGGC
AACTTGTTGGTTTGCGAAGCTGTGCTGCGGGCCATTGAAGAATATTACCC
TGACTTGGTCCCTAGTCAGCTGCCAATGCAGGCACCCGAGCATTTTGAGA
TAAAGAGCAGTACCACCAGCATCGATGTGGCGTGAAGTGAACGAGGGATT
GAGGGAGATTCAGGGAGGATTGTAAAAATGTATTCGGAGGAAAGGAGATG
AAGCGGGATATGGAAATCGACCACAATATCTGAGATGTATGGAT
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protein sequence of jgi.p|Nanoce1779_2|604197

>mRNA_8833-protein ID=mRNA_8833-protein|Name=jgi.p|Nanoce1779_2|604197|organism=Nannochloropsis oceanica|type=polypeptide|length=351bp
MPSSHPHHLLFSFSSIYDRLTPSKTSSWGRGAISGRRQELTFLGGMTIGI
GLATIFQIMFLLTASRAPTADEDTAAAALPRQPRSSSLRSLISFAFSSSY
SRGSSTSTGKRPKLLLFGDSLTQRGFEGPGQGWAAGLAHTYGRRADVVNR
GFSGYTSKWCALMLPTLFPADDPAWEVPLLAVVFLGANDAALPTREQHVT
VHEYQQYLRCIVAYLRNRRRLDGKGTQILLLTPPPVDEDRWEAHCLARGR
ELDRKNEVTRLYAQACLGVGKTMDVPVVDVWTLLGGADLTEVAPNLGDGL
HLSPQGNLLVCEAVLRAIEEYYPDLVPSQLPMQAPEHFEIKSSTTSIDVA
*
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mRNA from alignment at scaffold_28:286641..288284-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8833 ID=mRNA_8833|Name=jgi.p|Nanoce1779_2|604197|organism=Nannochloropsis oceanica|type=mRNA|length=1644bp|location=Sequence derived from alignment at scaffold_28:286641..288284- (Nannochloropsis oceanica)
GAGAAGGAATGTGGAGAGATCGCTCCTGATATATTTGGAAAGCGCGCGCT
TGCCATGAAGAAGAAGATCGATGGCATCCGGGGGGGAATTGCGGCGTTGG
AGAGAGAAGCATTGCGAGAGGAGAAGGAGGTGGTTCGGGAAAAGAGTAGG
AGCATGCGGCGGAAGTTTAAGAAAGTTACCAAGGCTGGGTATCGCGCAAA
TGCGAGAGCCATCAATATGGTCATGTGTGCGCGTGAATGGCTGCCTTATA
AATATAGGTGTGCAAGAAAAGGTAAATAACGGTTTGCCTGCTTGCCGCAC
CAGAGGGAGAACTTTTTCCTTCCGTCTTTTAGTCATTCACACCACCTCCT
ACACCACTCTCTGTACACGCCAACAGACAAAAGTGGGGTGAAGGCGCGTC
ATAGACTCTCTGGACTCTGCATGCTCCCTCGCGCTCCCCAGGTTTGCCGC
TGCATCGCTGGTGCTTCTGTGCCAATTCAAAAATGCCAAGTTCCCATCCC
CACCACCTCCTCTTCTCGTTCTCATCAATCTACGATCGCTTGACGCCTTC
AAAAACTTCTAGCTGGGGCCGAGGAGCAATTTCCGGCCGGCGACAAGAAT
TGACGTTCCTTGGTGGCATGACAATTGGGATCGGTCTGGCCACCATATTT
CAAATTATGTTCCTTCTCACGGCCAGTCGCGCCCCTACCGCCGACGAGGA
CACTGCTGCCGCGGCCCTTCCCCGGCAACCTCGATCCTCTTCTCTGCGTT
CCTTAATATCCTTTGCCTTTTCGTCTAGTTACTCTCGTGGTTCCTCCACC
TCCACGGGGAAGCGGCCCAAGCTCCTCCTTTTTGGGGACAGCTTAACCCA
ACGTGGCTTCGAGGGTCCTGGACAAGGGTGGGCAGCTGGTCTGGCCCACA
CCTATGGTCGCCGTGCAGACGTCGTGAATCGGGGATTTTCGGGGTACACG
TCCAAGTGGTGTGCCCTCATGTTGCCCACCCTTTTCCCGGCCGATGACCC
CGCGTGGGAAGTACCTCTGCTGGCGGTGGTGTTTTTGGGTGCCAACGACG
CAGCCTTGCCCACCCGTGAGCAGCATGTGACAGTCCACGAATATCAACAG
TATTTGCGGTGTATCGTGGCCTACTTGCGAAACCGACGACGGTTGGACGG
CAAGGGGACGCAGATCTTGCTCCTGACCCCGCCGCCCGTGGATGAGGACA
GGTGGGAGGCGCATTGCCTGGCACGAGGGCGGGAGCTGGATAGAAAGAAT
GAAGTGACACGGCTATACGCCCAGGCATGCTTGGGGGTTGGAAAGACGAT
GGACGTGCCAGTGGTGGACGTGTGGACGCTGCTGGGAGGAGCAGACCTGA
CTGAGGTAGCGCCCAACTTGGGGGACGGGCTGCACCTGTCGCCGCAAGGC
AACTTGTTGGTTTGCGAAGCTGTGCTGCGGGCCATTGAAGAATATTACCC
TGACTTGGTCCCTAGTCAGCTGCCAATGCAGGCACCCGAGCATTTTGAGA
TAAAGAGCAGTACCACCAGCATCGATGTGGCGTGAAGTGAACGAGGGATT
GAGGGAGATTCAGGGAGGATTGTAAAAATGTATTCGGAGGAAAGGAGATG
AAGCGGGATATGGAAATCGACCACAATATCTGAGATGTATGGAT
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Coding sequence (CDS) from alignment at scaffold_28:286641..288284-

>mRNA_8833 ID=mRNA_8833|Name=jgi.p|Nanoce1779_2|604197|organism=Nannochloropsis oceanica|type=CDS|length=1053bp|location=Sequence derived from alignment at scaffold_28:286641..288284- (Nannochloropsis oceanica)
ATGCCAAGTTCCCATCCCCACCACCTCCTCTTCTCGTTCTCATCAATCTA
CGATCGCTTGACGCCTTCAAAAACTTCTAGCTGGGGCCGAGGAGCAATTT
CCGGCCGGCGACAAGAATTGACGTTCCTTGGTGGCATGACAATTGGGATC
GGTCTGGCCACCATATTTCAAATTATGTTCCTTCTCACGGCCAGTCGCGC
CCCTACCGCCGACGAGGACACTGCTGCCGCGGCCCTTCCCCGGCAACCTC
GATCCTCTTCTCTGCGTTCCTTAATATCCTTTGCCTTTTCGTCTAGTTAC
TCTCGTGGTTCCTCCACCTCCACGGGGAAGCGGCCCAAGCTCCTCCTTTT
TGGGGACAGCTTAACCCAACGTGGCTTCGAGGGTCCTGGACAAGGGTGGG
CAGCTGGTCTGGCCCACACCTATGGTCGCCGTGCAGACGTCGTGAATCGG
GGATTTTCGGGGTACACGTCCAAGTGGTGTGCCCTCATGTTGCCCACCCT
TTTCCCGGCCGATGACCCCGCGTGGGAAGTACCTCTGCTGGCGGTGGTGT
TTTTGGGTGCCAACGACGCAGCCTTGCCCACCCGTGAGCAGCATGTGACA
GTCCACGAATATCAACAGTATTTGCGGTGTATCGTGGCCTACTTGCGAAA
CCGACGACGGTTGGACGGCAAGGGGACGCAGATCTTGCTCCTGACCCCGC
CGCCCGTGGATGAGGACAGGTGGGAGGCGCATTGCCTGGCACGAGGGCGG
GAGCTGGATAGAAAGAATGAAGTGACACGGCTATACGCCCAGGCATGCTT
GGGGGTTGGAAAGACGATGGACGTGCCAGTGGTGGACGTGTGGACGCTGC
TGGGAGGAGCAGACCTGACTGAGGTAGCGCCCAACTTGGGGGACGGGCTG
CACCTGTCGCCGCAAGGCAACTTGTTGGTTTGCGAAGCTGTGCTGCGGGC
CATTGAAGAATATTACCCTGACTTGGTCCCTAGTCAGCTGCCAATGCAGG
CACCCGAGCATTTTGAGATAAAGAGCAGTACCACCAGCATCGATGTGGCG
TGA
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Synonyms
Publications