|
|
Properties
| Property Name | Value |
|---|
| TranscriptId | 221517 |
| Track | FilteredModels2 |
| ProteinId | 221431 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_28 | supercontig | scaffold_28:275903..277272 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_8830 ID=mRNA_8830|Name=jgi.p|Nanoce1779_2|221431|organism=Nannochloropsis oceanica|type=mRNA|length=1370bp
CTTGCCCCCTTACACACTCTCTACATAAAGTACCACCTACGAAACCATGC
AGCCACCTCAGCCACCGGAAGTACCAGCACCTCTACCTGCCCTGCCAACT
ATAGCAGCATCTCCCGTTTCCTACTTTGCCCCGGCTCCTCCTGACCCCCA
TGCTCTGGTCCCGTCTCCCCCCAACTACATGCTGCCGCGTCTCCTGGGCT
CGACCGGCTGCTGGGTACGTACATATCTTGAAAGGGGAATGAAAGAAGGA
GGAAAACAAAGATGAGGAAGACGAGGTTGTGCAAACGAGCGAACCTGCAT
CCGTATCGAGCTATTTCCTTTTGCCCGCTTTCTTCTTCCCTTCCCATACT
TCCTCCCTACCTAACAAAAATGAGTCCGTGGCGTCTAGTTGCTTTCCTGC
TTCAGGCCTGGAATCACCAAGCTTTCGACACTTACTTTCATCATCTTACT
CCACCTCGCTGACCTTTCCTTCCCCCCCCCTCCATCCCTTTCTCGCCGCT
TCACATGTGCGGGCATTACAGGAGGTCATCCACCGTGTGTGGCTGCACCC
GTGCTTCCATGCCCTGGTGGGCGGCCCGTTGCCTCGGCAGGTGCGGCAAG
AGGAGAAAACCGGCATCATGCGGGCCTACACGTACGTGGCAGGAGGGACG
GAGAGAGGGAAGACTAGGGTGTGACCGGAGGGCATGTGGGAGAAAGAGGT
CATGCCATGGTTTGTCAGTTAGTTCCCCAGATAATGCCACCGGGACGCCT
CACCCCTTTATGCCCCCCCTTTCTTCCCTCCCTCCCTCCCTCTATCGCCT
TTTCTCAGACTCTGCTATGAAATGTGCACGCAGCGCGGCCCCAACAACCA
CTCCGCCTTCCTCTACTCCAAGTTCGGCGAGACCGTGTCCTCTTTCCTCT
CCCTCCACGTCGCTCCCTCCTTCCACCCCTCCCTCCCTCCCTCCCTCCTC
CTTCAGGAGCTGGTTGCCCGGCAAGCCCAGCATGCCTACCTTCTCTCAGA
ACTCGTCCGCCCCTTCAACTACCTTGTGGGTTCCTCCCTCCCTCCCTCCC
TCCCTCCCTCCCTCCCTTTGTTTCCCCCTCCATTTCTACCTTTCGGATAC
CGCAACAACTTCTCGTCCTCACCCCTTCCCTCTCCTCCAGGAGCGATACT
TTATCCCTGCCTGTCGCCTCCCCAGATTGCCTTGTGTGGGCCGCACCTGT
TTTTGGGAGAAGGTGGTGCGGCCGGTAAAGGCGGAGATTATCGAGGTACG
GATGGGGGGTGAGGAGGGAGGAAAGGGGGGAAGGAGGGGAAAAGAGAGAG
GGGGGGTGATTTAGATGGGAAAGGAGGAACTAACATTTATCGTCATCATT
ACACCACATGATATGGTCCT back to topprotein sequence of jgi.p|Nanoce1779_2|221431 >mRNA_8830-protein ID=mRNA_8830-protein|Name=jgi.p|Nanoce1779_2|221431|organism=Nannochloropsis oceanica|type=polypeptide|length=270bp
MCGHYRRSSTVCGCTRASMPWWAARCLGRCGKRRKPASCGPTRTWQEGRR
EGRLGCDRRACGRKRSCHGLSVSSPDNATGTPHPFMPPLSSLPPSLYRLF
SDSAMKCARSAAPTTTPPSSTPSSARPCPLSSPSTSLPPSTPPSLPPSSF
RSWLPGKPSMPTFSQNSSAPSTTLWVPPSLPPSLPPSLCFPLHFYLSDTA
TTSRPHPFPLLQERYFIPACRLPRLPCVGRTCFWEKVVRPVKAEIIEVRM
GGEEGGKGGRRGKERGGVI* back to topmRNA from alignment at scaffold_28:275903..277272+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_8830 ID=mRNA_8830|Name=jgi.p|Nanoce1779_2|221431|organism=Nannochloropsis oceanica|type=mRNA|length=1370bp|location=Sequence derived from alignment at scaffold_28:275903..277272+ (Nannochloropsis oceanica)
CTTGCCCCCTTACACACTCTCTACATAAAGTACCACCTACGAAACCATGC
AGCCACCTCAGCCACCGGAAGTACCAGCACCTCTACCTGCCCTGCCAACT
ATAGCAGCATCTCCCGTTTCCTACTTTGCCCCGGCTCCTCCTGACCCCCA
TGCTCTGGTCCCGTCTCCCCCCAACTACATGCTGCCGCGTCTCCTGGGCT
CGACCGGCTGCTGGGTACGTACATATCTTGAAAGGGGAATGAAAGAAGGA
GGAAAACAAAGATGAGGAAGACGAGGTTGTGCAAACGAGCGAACCTGCAT
CCGTATCGAGCTATTTCCTTTTGCCCGCTTTCTTCTTCCCTTCCCATACT
TCCTCCCTACCTAACAAAAATGAGTCCGTGGCGTCTAGTTGCTTTCCTGC
TTCAGGCCTGGAATCACCAAGCTTTCGACACTTACTTTCATCATCTTACT
CCACCTCGCTGACCTTTCCTTCCCCCCCCCTCCATCCCTTTCTCGCCGCT
TCACATGTGCGGGCATTACAGGAGGTCATCCACCGTGTGTGGCTGCACCC
GTGCTTCCATGCCCTGGTGGGCGGCCCGTTGCCTCGGCAGGTGCGGCAAG
AGGAGAAAACCGGCATCATGCGGGCCTACACGTACGTGGCAGGAGGGACG
GAGAGAGGGAAGACTAGGGTGTGACCGGAGGGCATGTGGGAGAAAGAGGT
CATGCCATGGTTTGTCAGTTAGTTCCCCAGATAATGCCACCGGGACGCCT
CACCCCTTTATGCCCCCCCTTTCTTCCCTCCCTCCCTCCCTCTATCGCCT
TTTCTCAGACTCTGCTATGAAATGTGCACGCAGCGCGGCCCCAACAACCA
CTCCGCCTTCCTCTACTCCAAGTTCGGCGAGACCGTGTCCTCTTTCCTCT
CCCTCCACGTCGCTCCCTCCTTCCACCCCTCCCTCCCTCCCTCCCTCCTC
CTTCAGGAGCTGGTTGCCCGGCAAGCCCAGCATGCCTACCTTCTCTCAGA
ACTCGTCCGCCCCTTCAACTACCTTGTGGGTTCCTCCCTCCCTCCCTCCC
TCCCTCCCTCCCTCCCTTTGTTTCCCCCTCCATTTCTACCTTTCGGATAC
CGCAACAACTTCTCGTCCTCACCCCTTCCCTCTCCTCCAGGAGCGATACT
TTATCCCTGCCTGTCGCCTCCCCAGATTGCCTTGTGTGGGCCGCACCTGT
TTTTGGGAGAAGGTGGTGCGGCCGGTAAAGGCGGAGATTATCGAGGTACG
GATGGGGGGTGAGGAGGGAGGAAAGGGGGGAAGGAGGGGAAAAGAGAGAG
GGGGGGTGATTTAGATGGGAAAGGAGGAACTAACATTTATCGTCATCATT
ACACCACATGATATGGTCCT back to topCoding sequence (CDS) from alignment at scaffold_28:275903..277272+ >mRNA_8830 ID=mRNA_8830|Name=jgi.p|Nanoce1779_2|221431|organism=Nannochloropsis oceanica|type=CDS|length=810bp|location=Sequence derived from alignment at scaffold_28:275903..277272+ (Nannochloropsis oceanica)
ATGTGCGGGCATTACAGGAGGTCATCCACCGTGTGTGGCTGCACCCGTGC
TTCCATGCCCTGGTGGGCGGCCCGTTGCCTCGGCAGGTGCGGCAAGAGGA
GAAAACCGGCATCATGCGGGCCTACACGTACGTGGCAGGAGGGACGGAGA
GAGGGAAGACTAGGGTGTGACCGGAGGGCATGTGGGAGAAAGAGGTCATG
CCATGGTTTGTCAGTTAGTTCCCCAGATAATGCCACCGGGACGCCTCACC
CCTTTATGCCCCCCCTTTCTTCCCTCCCTCCCTCCCTCTATCGCCTTTTC
TCAGACTCTGCTATGAAATGTGCACGCAGCGCGGCCCCAACAACCACTCC
GCCTTCCTCTACTCCAAGTTCGGCGAGACCGTGTCCTCTTTCCTCTCCCT
CCACGTCGCTCCCTCCTTCCACCCCTCCCTCCCTCCCTCCCTCCTCCTTC
AGGAGCTGGTTGCCCGGCAAGCCCAGCATGCCTACCTTCTCTCAGAACTC
GTCCGCCCCTTCAACTACCTTGTGGGTTCCTCCCTCCCTCCCTCCCTCCC
TCCCTCCCTCCCTTTGTTTCCCCCTCCATTTCTACCTTTCGGATACCGCA
ACAACTTCTCGTCCTCACCCCTTCCCTCTCCTCCAGGAGCGATACTTTAT
CCCTGCCTGTCGCCTCCCCAGATTGCCTTGTGTGGGCCGCACCTGTTTTT
GGGAGAAGGTGGTGCGGCCGGTAAAGGCGGAGATTATCGAGGTACGGATG
GGGGGTGAGGAGGGAGGAAAGGGGGGAAGGAGGGGAAAAGAGAGAGGGGG
GGTGATTTAG back to top
|