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Properties
| Property Name | Value |
|---|
| TranscriptId | 574597 |
| Track | FilteredModels2 |
| ProteinId | 574511 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_2 | supercontig | scaffold_2:655963..657938 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_883 ID=mRNA_883|Name=jgi.p|Nanoce1779_2|574511|organism=Nannochloropsis oceanica|type=mRNA|length=1549bp
ACAGATATAGCATAGAACTCTGAAGCAATGAAGGGCAGGAAGGAGCTTTT
CCAGCAGCTCCTGCGCCGGAGGGGGGCAGCAACGGCCTCTTCAGGTCTCA
TCTTGCCACCTTGTGTGACAGCTTCTCAGGGCGGACGCCCCCTTTCGGCC
TTGTCGGGCAGGAGTCTGGAGGTGATTGCGCCTGCTACCGAAGTCACGCA
ACTACCAAGCGGCCTGCGCGTCGCATCCGAGACCTCCCACGGCGAAACCG
CCACAGTCGGCGTCTGGATCGACGCCGGCAGCCGGTACGAAACGGCACAA
AACAACGGTGCAGCCCACTTTCTCGAGCACATGGCTTTTAAAGGCACGAA
CCGTCGGGCGCAGTATGATATTGAGGTGGAGATTGAAAACATGGGGGGGC
ATTTAAATGCTTATACCTCACGGGAACAGACCGTGTATTACGCAAAGGTA
TTCAAAGGGGACGTCGAGAGGGCGATGGATATTCTGAGTGACATTTTGCA
GCATTCAGTATTCGATGAACGGGCCGTCACGCGGGAGAGGGACGTGATCT
TGAGGGAGATGGAGGAAGTGAACAAGCAGAAGGAAGAGGTCATCTTGGAT
TACTTGCACGAGACAGCATTTCAGGGTACAGGGTTGGGGAGAACAATTCT
GGGACCGGAGGAGAATGTGAAGAGCCTGCATAGGGAAGCATTGCAGGACT
ATATCAAAACGCACTATACGGCACCTCGGATGGTGATTGCTGGGGCGGGG
GCGATTAAGCATGGAAGATTGGTGGATTTGGCGCAGCAGTATTTTGGGAA
TTTACCGCTGCAGGCGCCTCCCGGGGCGGATACGGGGATGGATGCTGCTG
TGTTTGTGGGGAGTGACAAAAGAGTGTTTTTACCGAAGGAGGAGGAGAGC
GAGGCGCACGTAGCGTTGGCGTTTCGGGGGGCGGCATGGACGTCGGAGTT
CGCTTTTCCTTTGATGGTGTTGCAGACGATTATGGGGTGTTGGGACAGGA
CGAGCGGGGCGAGTCGGCAGACGAGCGGAAGGCTAGGCCAGGCGGTGGCG
GAAAAGGAGTTGTGTCATTCGTATGTAACGTTTAATACGTGCTATAAGGA
TATCGGGTTATTTGGCCTCTATGCCGTGGTGCCACCGGAGAAGTTAAAGG
ACTTCACGACTGCCATGTGCGAGCATCTGGTGCGGATGGCCCATGATGTC
ACTCCCGCGGAGGTGGAGAAGGCAAAGACACAATTAAAGTGTACATTGCT
GATGCAGTTGGACTCGTTTGCGCATGTGTGTGAGGATATTGGGCGGCAGA
TGCTGACGTATGACAGACGGATGACGCCTGCGGAGATTTTTGCGAGGATT
GATGCAGTGCAGGCGGAGGATGTGAAAGCTACAGCGCTGGCTTACATTAT
AGATGAGGACCATGCCTTGGCGGCGATAGGCCCTGTGGGCGGGTTGCCGG
ACTATGATTGGATTAGGCGGCAGTGTTTGTAACGTCAGGTAGGGAGAAGG
GAGGGGGGAAGAAGAAATATCAAGAAAAACAAGAAATGACGATGCTTCC back to topprotein sequence of jgi.p|Nanoce1779_2|574511 >mRNA_883-protein ID=mRNA_883-protein|Name=jgi.p|Nanoce1779_2|574511|organism=Nannochloropsis oceanica|type=polypeptide|length=485bp
MKGRKELFQQLLRRRGAATASSGLILPPCVTASQGGRPLSALSGRSLEVI
APATEVTQLPSGLRVASETSHGETATVGVWIDAGSRYETAQNNGAAHFLE
HMAFKGTNRRAQYDIEVEIENMGGHLNAYTSREQTVYYAKVFKGDVERAM
DILSDILQHSVFDERAVTRERDVILREMEEVNKQKEEVILDYLHETAFQG
TGLGRTILGPEENVKSLHREALQDYIKTHYTAPRMVIAGAGAIKHGRLVD
LAQQYFGNLPLQAPPGADTGMDAAVFVGSDKRVFLPKEEESEAHVALAFR
GAAWTSEFAFPLMVLQTIMGCWDRTSGASRQTSGRLGQAVAEKELCHSYV
TFNTCYKDIGLFGLYAVVPPEKLKDFTTAMCEHLVRMAHDVTPAEVEKAK
TQLKCTLLMQLDSFAHVCEDIGRQMLTYDRRMTPAEIFARIDAVQAEDVK
ATALAYIIDEDHALAAIGPVGGLPDYDWIRRQCL* back to topmRNA from alignment at scaffold_2:655963..657938- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_883 ID=mRNA_883|Name=jgi.p|Nanoce1779_2|574511|organism=Nannochloropsis oceanica|type=mRNA|length=1976bp|location=Sequence derived from alignment at scaffold_2:655963..657938- (Nannochloropsis oceanica)
ACAGATATAGCATAGAACTCTGAAGCAATGAAGGGCAGGAAGGAGCTTTT
CCAGCAGCTCCTGCGCCGGAGGGGGGCAGCAACGGCCTCTTCAGGTCTCA
TCTTGCCACCTTGTGTGACAGCTTCTCAGGTACGTGGGGAAACCAGGGCA
TAGTATCCACCGCTATTCCCACCGCGGCGTCTATCTTTACACGTCCCTGA
CACACATTTGTCCACATTGCCATCACACACACATGATATAGGGCGGACGC
CCCCTTTCGGCCTTGTCGGGCAGGAGTCTGGAGGTGATTGCGCCTGCTAC
CGAAGTCACGCAACTACCAAGCGGCCTGCGCGTCGCATCCGAGGTACGTA
AGACTAGAGGATGCGACAATGTGTGCGTTTGGAGTGGGGAGAGGTGGCCG
CCTCTAATGCTTCAATCCTGTGTACCTTCAATATACATGCGCTTTCACCT
CGGGTGTGGCGCTCACCTGGATGGGGGAAAGCCAAAAAGGCATGCCGAGG
CAGGTCAACGCAAGGCGCATTCCGCTCTGTGTAAAGCGCGCCTGCACGTG
TATCTCATACTATTAAAAGCGCGGCCAGCTGATAAACTCTGACATATAAT
TTGGTGTATGCATCTATCTTATACCCTGTCCCACACCCTTTTACACCACC
TCAAACAGACCTCCCACGGCGAAACCGCCACAGTCGGCGTCTGGATCGAC
GCCGGCAGCCGGTACGAAACGGCACAAAACAACGGTGCAGCCCACTTTCT
CGAGCACATGGCTTTTAAAGGCACGAACCGTCGGGCGCAGTATGATATTG
AGGTGGAGATTGAAAACATGGGGGGGCATTTAAATGCTTATACCTCACGG
GAACAGACCGTGTATTACGCAAAGGTATTCAAAGGGGACGTCGAGAGGGC
GATGGATATTCTGAGTGACATTTTGCAGCATTCAGTATTCGATGAACGGG
CCGTCACGCGGGAGAGGGACGTGATCTTGAGGGAGATGGAGGAAGTGAAC
AAGCAGAAGGAAGAGGTCATCTTGGATTACTTGCACGAGACAGCATTTCA
GGGTACAGGGTTGGGGAGAACAATTCTGGGACCGGAGGAGAATGTGAAGA
GCCTGCATAGGGAAGCATTGCAGGACTATATCAAAACGCACTATACGGCA
CCTCGGATGGTGATTGCTGGGGCGGGGGCGATTAAGCATGGAAGATTGGT
GGATTTGGCGCAGCAGTATTTTGGGAATTTACCGCTGCAGGCGCCTCCCG
GGGCGGATACGGGGATGGATGCTGCTGTGTTTGTGGGGAGTGACAAAAGA
GTGTTTTTACCGAAGGAGGAGGAGAGCGAGGCGCACGTAGCGTTGGCGTT
TCGGGGGGCGGCATGGACGTCGGAGTTCGCTTTTCCTTTGATGGTGTTGC
AGACGATTATGGGGTGTTGGGACAGGACGAGCGGGGCGAGTCGGCAGACG
AGCGGAAGGCTAGGCCAGGCGGTGGCGGAAAAGGAGTTGTGTCATTCGTA
TGTAACGTTTAATACGTGCTATAAGGATATCGGGTTATTTGGCCTCTATG
CCGTGGTGCCACCGGAGAAGTTAAAGGACTTCACGACTGCCATGTGCGAG
CATCTGGTGCGGATGGCCCATGATGTCACTCCCGCGGAGGTGGAGAAGGC
AAAGACACAATTAAAGTGTACATTGCTGATGCAGTTGGACTCGTTTGCGC
ATGTGTGTGAGGATATTGGGCGGCAGATGCTGACGTATGACAGACGGATG
ACGCCTGCGGAGATTTTTGCGAGGATTGATGCAGTGCAGGCGGAGGATGT
GAAAGCTACAGCGCTGGCTTACATTATAGATGAGGACCATGCCTTGGCGG
CGATAGGCCCTGTGGGCGGGTTGCCGGACTATGATTGGATTAGGCGGCAG
TGTTTGTAACGTCAGGTAGGGAGAAGGGAGGGGGGAAGAAGAAATATCAA
GAAAAACAAGAAATGACGATGCTTCC back to topCoding sequence (CDS) from alignment at scaffold_2:655963..657938- >mRNA_883 ID=mRNA_883|Name=jgi.p|Nanoce1779_2|574511|organism=Nannochloropsis oceanica|type=CDS|length=4365bp|location=Sequence derived from alignment at scaffold_2:655963..657938- (Nannochloropsis oceanica)
ACCTCCCACGGCGAAACCGCCACAGTCGGCGTCTGGATCGACGCCGGCAG
CCGGTACGAAACGGCACAAAACAACGGTGCAGCCCACTTTCTCGAGCACA
TGGCTTTTAAAGGCACGAACCGTCGGGCGCAGTATGATATTGAGGTGGAG
ATTGAAAACATGGGGGGGCATTTAAATGCTTATACCTCACGGGAACAGAC
CGTGTATTACGCAAAGGTATTCAAAGGGGACGTCGAGAGGGCGATGGATA
TTCTGAGTGACATTTTGCAGCATTCAGTATTCGATGAACGGGCCGTCACG
CGGGAGAGGGACGTGATCTTGAGGGAGATGGAGGAAGTGAACAAGCAGAA
GGAAGAGGTCATCTTGGATTACTTGCACGAGACAGCATTTCAGGGTACAG
GGTTGGGGAGAACAATTCTGGGACCGGAGGAGAATGTGAAGAGCCTGCAT
AGGGAAGCATTGCAGGACTATATCAAAACGCACTATACGGCACCTCGGAT
GGTGATTGCTGGGGCGGGGGCGATTAAGCATGGAAGATTGGTGGATTTGG
CGCAGCAGTATTTTGGGAATTTACCGCTGCAGGCGCCTCCCGGGGCGGAT
ACGGGGATGGATGCTGCTGTGTTTGTGGGGAGTGACAAAAGAGTGTTTTT
ACCGAAGGAGGAGGAGAGCGAGGCGCACGTAGCGTTGGCGTTTCGGGGGG
CGGCATGGACGTCGGAGTTCGCTTTTCCTTTGATGGTGTTGCAGACGATT
ATGGGGTGTTGGGACAGGACGAGCGGGGCGAGTCGGCAGACGAGCGGAAG
GCTAGGCCAGGCGGTGGCGGAAAAGGAGTTGTGTCATTCGTATGTAACGT
TTAATACGTGCTATAAGGATATCGGGTTATTTGGCCTCTATGCCGTGGTG
CCACCGGAGAAGTTAAAGGACTTCACGACTGCCATGTGCGAGCATCTGGT
GCGGATGGCCCATGATGTCACTCCCGCGGAGGTGGAGAAGGCAAAGACAC
AATTAAAGTGTACATTGCTGATGCAGTTGGACTCGTTTGCGCATGTGTGT
GAGGATATTGGGCGGCAGATGCTGACGTATGACAGACGGATGACGCCTGC
GGAGATTTTTGCGAGGATTGATGCAGTGCAGGCGGAGGATGTGAAAGCTA
CAGCGCTGGCTTACATTATAGATGAGGACCATGCCTTGGCGGCGATAGGC
CCTGTGGGCGGGTTGCCGGACTATGATTGGATTAGGCGGCAGTGTTTGTA
AGGCGGACGCCCCCTTTCGGCCTTGTCGGGCAGGAGTCTGGAGGTGATTG
CGCCTGCTACCGAAGTCACGCAACTACCAAGCGGCCTGCGCGTCGCATCC
GAGATGAAGGGCAGGAAGGAGCTTTTCCAGCAGCTCCTGCGCCGGAGGGG
GGCAGCAACGGCCTCTTCAGGTCTCATCTTGCCACCTTGTGTGACAGCTT
CTCAGACCTCCCACGGCGAAACCGCCACAGTCGGCGTCTGGATCGACGCC
GGCAGCCGGTACGAAACGGCACAAAACAACGGTGCAGCCCACTTTCTCGA
GCACATGGCTTTTAAAGGCACGAACCGTCGGGCGCAGTATGATATTGAGG
TGGAGATTGAAAACATGGGGGGGCATTTAAATGCTTATACCTCACGGGAA
CAGACCGTGTATTACGCAAAGGTATTCAAAGGGGACGTCGAGAGGGCGAT
GGATATTCTGAGTGACATTTTGCAGCATTCAGTATTCGATGAACGGGCCG
TCACGCGGGAGAGGGACGTGATCTTGAGGGAGATGGAGGAAGTGAACAAG
CAGAAGGAAGAGGTCATCTTGGATTACTTGCACGAGACAGCATTTCAGGG
TACAGGGTTGGGGAGAACAATTCTGGGACCGGAGGAGAATGTGAAGAGCC
TGCATAGGGAAGCATTGCAGGACTATATCAAAACGCACTATACGGCACCT
CGGATGGTGATTGCTGGGGCGGGGGCGATTAAGCATGGAAGATTGGTGGA
TTTGGCGCAGCAGTATTTTGGGAATTTACCGCTGCAGGCGCCTCCCGGGG
CGGATACGGGGATGGATGCTGCTGTGTTTGTGGGGAGTGACAAAAGAGTG
TTTTTACCGAAGGAGGAGGAGAGCGAGGCGCACGTAGCGTTGGCGTTTCG
GGGGGCGGCATGGACGTCGGAGTTCGCTTTTCCTTTGATGGTGTTGCAGA
CGATTATGGGGTGTTGGGACAGGACGAGCGGGGCGAGTCGGCAGACGAGC
GGAAGGCTAGGCCAGGCGGTGGCGGAAAAGGAGTTGTGTCATTCGTATGT
AACGTTTAATACGTGCTATAAGGATATCGGGTTATTTGGCCTCTATGCCG
TGGTGCCACCGGAGAAGTTAAAGGACTTCACGACTGCCATGTGCGAGCAT
CTGGTGCGGATGGCCCATGATGTCACTCCCGCGGAGGTGGAGAAGGCAAA
GACACAATTAAAGTGTACATTGCTGATGCAGTTGGACTCGTTTGCGCATG
TGTGTGAGGATATTGGGCGGCAGATGCTGACGTATGACAGACGGATGACG
CCTGCGGAGATTTTTGCGAGGATTGATGCAGTGCAGGCGGAGGATGTGAA
AGCTACAGCGCTGGCTTACATTATAGATGAGGACCATGCCTTGGCGGCGA
TAGGCCCTGTGGGCGGGTTGCCGGACTATGATTGGATTAGGCGGCAGTGT
TTGTAAGGCGGACGCCCCCTTTCGGCCTTGTCGGGCAGGAGTCTGGAGGT
GATTGCGCCTGCTACCGAAGTCACGCAACTACCAAGCGGCCTGCGCGTCG
CATCCGAGATGAAGGGCAGGAAGGAGCTTTTCCAGCAGCTCCTGCGCCGG
AGGGGGGCAGCAACGGCCTCTTCAGGTCTCATCTTGCCACCTTGTGTGAC
AGCTTCTCAGACCTCCCACGGCGAAACCGCCACAGTCGGCGTCTGGATCG
ACGCCGGCAGCCGGTACGAAACGGCACAAAACAACGGTGCAGCCCACTTT
CTCGAGCACATGGCTTTTAAAGGCACGAACCGTCGGGCGCAGTATGATAT
TGAGGTGGAGATTGAAAACATGGGGGGGCATTTAAATGCTTATACCTCAC
GGGAACAGACCGTGTATTACGCAAAGGTATTCAAAGGGGACGTCGAGAGG
GCGATGGATATTCTGAGTGACATTTTGCAGCATTCAGTATTCGATGAACG
GGCCGTCACGCGGGAGAGGGACGTGATCTTGAGGGAGATGGAGGAAGTGA
ACAAGCAGAAGGAAGAGGTCATCTTGGATTACTTGCACGAGACAGCATTT
CAGGGTACAGGGTTGGGGAGAACAATTCTGGGACCGGAGGAGAATGTGAA
GAGCCTGCATAGGGAAGCATTGCAGGACTATATCAAAACGCACTATACGG
CACCTCGGATGGTGATTGCTGGGGCGGGGGCGATTAAGCATGGAAGATTG
GTGGATTTGGCGCAGCAGTATTTTGGGAATTTACCGCTGCAGGCGCCTCC
CGGGGCGGATACGGGGATGGATGCTGCTGTGTTTGTGGGGAGTGACAAAA
GAGTGTTTTTACCGAAGGAGGAGGAGAGCGAGGCGCACGTAGCGTTGGCG
TTTCGGGGGGCGGCATGGACGTCGGAGTTCGCTTTTCCTTTGATGGTGTT
GCAGACGATTATGGGGTGTTGGGACAGGACGAGCGGGGCGAGTCGGCAGA
CGAGCGGAAGGCTAGGCCAGGCGGTGGCGGAAAAGGAGTTGTGTCATTCG
TATGTAACGTTTAATACGTGCTATAAGGATATCGGGTTATTTGGCCTCTA
TGCCGTGGTGCCACCGGAGAAGTTAAAGGACTTCACGACTGCCATGTGCG
AGCATCTGGTGCGGATGGCCCATGATGTCACTCCCGCGGAGGTGGAGAAG
GCAAAGACACAATTAAAGTGTACATTGCTGATGCAGTTGGACTCGTTTGC
GCATGTGTGTGAGGATATTGGGCGGCAGATGCTGACGTATGACAGACGGA
TGACGCCTGCGGAGATTTTTGCGAGGATTGATGCAGTGCAGGCGGAGGAT
GTGAAAGCTACAGCGCTGGCTTACATTATAGATGAGGACCATGCCTTGGC
GGCGATAGGCCCTGTGGGCGGGTTGCCGGACTATGATTGGATTAGGCGGC
AGTGTTTGTAAGGCGGACGCCCCCTTTCGGCCTTGTCGGGCAGGAGTCTG
GAGGTGATTGCGCCTGCTACCGAAGTCACGCAACTACCAAGCGGCCTGCG
CGTCGCATCCGAGATGAAGGGCAGGAAGGAGCTTTTCCAGCAGCTCCTGC
GCCGGAGGGGGGCAGCAACGGCCTCTTCAGGTCTCATCTTGCCACCTTGT
GTGACAGCTTCTCAG back to top
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