jgi.p|Nanoce1779_2|604170, mRNA_8829 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|604170
Unique Name	mRNA_8829
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1037
Alignment location	scaffold_28:272905..274983 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	604256
Track	FilteredModels2
ProteinId	604170

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_28	supercontig	scaffold_28:272905..274983 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|604170	gene_8829	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|604170	mRNA_8829-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8829	CDS_8829	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_28:272905..274983+
coding sequence from alignment at scaffold_28:272905..274983+

mRNA sequence

>mRNA_8829 ID=mRNA_8829|Name=jgi.p|Nanoce1779_2|604170|organism=Nannochloropsis oceanica|type=mRNA|length=1037bp
ACAGGTATATGGATCTTTGTTCCCCCTCTCGGGCGCCTCTGCGGCAGCGG
AAGCTCTCGCCAATGGCGGCTGGGGTCGACACGGAAGAGACACGGTTATT
GCGGGTAATAGGCTTGTGTACGGCCAGTATTTTGCTACTGGACATTTGGG
CCTGGATCTCACCTGGAATGCTCGCGCGCTCGGGGACTGAGCACACCGTC
AGCGACTTTGACCCCTCCTCGTTTTTCTACCTCTTTCCCTTTACGCTGCA
TGCCTTGGCAGGGCTCTGGTTCTTCACTCGCAAGCAATGTCAACCCCTTC
CCTTCTGGCGGCGCGTGGTACGCCTGCGTCTCTTCGCCCTCCTCTGCCTC
GCGTTGGCTGTGCCAGCCTTGGTCTCGCGCGTCGTCACCCTGCGAACATA
CTGCCACTTAAATGGAAAAATCGAGGAGGAGGTGGAGGAGGGGAGTGCGT
TCAAGGCCTGCACAAGTGCTCGCATGACCAACACAAGTGTCATGGCCGTC
GTGTACGCCGTCCTGGGGGTGTCCATGGTCCAGGCGCTCATCGAGCTCGA
GGCCCTGACCAAGTGGCGCTACCAGTACCAGTGCAATCCTTGCTCCTATA
ACCGGCCCTTCCTTCCATCCACTCTTCCTCCATACGTCTCCGCATCATCC
TCCATCTCCACCTCTGCGTGCTCCCTGTCTTCCTCGGCAAACAAAGAGGG
CGGGGATGAGGAAGGGGACGAAGGTCTGCATTCAGCGCGCACCGTTTACG
ATGATAATCGTGCCTTATTTGGAGATGCCACATTTTATGAAGATGGTACC
TCTCCTTCTCCTGATGGCTCTCTCCCTCCCCCCCTCACTCCTTCCCCGCC
AGTGGGAAAAGGCGTAATGGGAAGCAGTGAGCGGAGCGCATTTTCATCCT
ACGTGGCTGGGAGCTGTGTGTGAGTTTACGGGAAGACAGGAAAAAGCGGG
GAAATCAGCGGAAGTGTGTATTATTTCAATGCAACAAGCAATTGACAAGC
AAAAAAGAAGAATGAGATTGTCTTCGCGGCCTGTGTG

protein sequence of jgi.p|Nanoce1779_2|604170

>mRNA_8829-protein ID=mRNA_8829-protein|Name=jgi.p|Nanoce1779_2|604170|organism=Nannochloropsis oceanica|type=polypeptide|length=305bp
MDLCSPSRAPLRQRKLSPMAAGVDTEETRLLRVIGLCTASILLLDIWAWI
SPGMLARSGTEHTVSDFDPSSFFYLFPFTLHALAGLWFFTRKQCQPLPFW
RRVVRLRLFALLCLALAVPALVSRVVTLRTYCHLNGKIEEEVEEGSAFKA
CTSARMTNTSVMAVVYAVLGVSMVQALIELEALTKWRYQYQCNPCSYNRP
FLPSTLPPYVSASSSISTSACSLSSSANKEGGDEEGDEGLHSARTVYDDN
RALFGDATFYEDGTSPSPDGSLPPPLTPSPPVGKGVMGSSERSAFSSYVA
GSCV*

mRNA from alignment at scaffold_28:272905..274983+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8829 ID=mRNA_8829|Name=jgi.p|Nanoce1779_2|604170|organism=Nannochloropsis oceanica|type=mRNA|length=2079bp|location=Sequence derived from alignment at scaffold_28:272905..274983+ (Nannochloropsis oceanica)
ACAGGTATATGGATCTTTGTTCCCCCTCTCGGGCGCCTCTGCGGCAGCGG
AAGCTCTCGCCAATGGCGGCTGGGGTCGACACGGAAGAGACACGGTTATT
GCGGTAAGGAAAGAGGAAGTATAGGTGGGCGGCGTAGAATGATCAAATTA
GAAGACATGTACGACAAGTAGGGCATAGAACAGACGGGATAGCTCGGTGA
AATGGAGAGCAGGAAAACAAATGAGCGGAACTGTCCGTGTTGGTAGCATT
ACATCCCCCCCCCTTACTTGGCTGTCATCAGCGCCTCTCATTTTTCTTTC
TCTCTTTTTGCCTGTCAACAGGGTAATAGGCTTGTGTACGGCCAGTATTT
TGCTACTGGACATTTGGGCCTGGATCTCACCTGGAATGCTCGCGCGCTCG
GGGACTGTAAGTGCAGGGAAGAGTGGCAAGAGGAGGGGGTAGTGAGGCGG
CGCAGCAAGGAAGTAAAAGGAGATACGCAGACTGAACCACCTTTGCGTCA
GATTTTGAAAATCGAGGCTTGAATATTGTACTGACCTGATTCTAAAGCCT
ATTTTCGTCTTCCATGCACCTCACCTTTCTCTGCCTCCTTTCTTCCTCCT
CCATGTTCTCATCCTTCCCTTCCCATTCATTTAAAGGAGCACACCGTCAG
CGACTTTGACCCCTCCTCGTTTTTCTACCTCTTTCCCTTTACGCTGCATG
CCTTGGCAGGGCTCTGGTTCTTCACTCGGTAAGGACAAGAGGGGAGGGAA
GAGAGATGGCGAGGGAGTAGAGAGGGGAGGAGGGAGGAGGAGGGGATGGA
GGGATCTCAAAGAGGGAGCAGGCATGCATCAGGCCCTTCGAGATTGCCGT
TTATTGAAATAAGACGAAGGGGAAGAGGGGGGGTCTCGACCCATTTACTA
ATCTCCCCTTAAATCTGTTCTCGATCCCTCTCTTCTTCGTTATCAGCAAG
CAATGTCAACCCCTTCCCTTCTGGCGGCGCGTGGTACGCCTGCGTCTCTT
CGCCCTCCTCTGCCTCGCGTTGGCTGTGCCAGCCTTGGTCTCGCGCGTCG
TCACCCTGCGAACATACTGCCACTTAAATGGAAAAATCGAGGAGGAGGTG
GAGGAGGGGAGTGCGTTCAAGGTAGGAAAGGGTGAGGGAGGGGAGGGAGG
GGAAGGGTGGCTAGACCGAATGACGCCGTATTCTTTCACTCACGATCTTG
CTCTTTCCTTCTGCATTTCCTACATTTCCCTCCCTACACCCATACCCTCC
CTTTTTATGCCTTCCCTCCTAGGCCTGCACAAGTGCTCGCATGACCAACA
CAAGTGTCATGGCCGTCGTGTACGCCGTCCTGGGGGTGTCCATGGTCCAG
GTCAGTGAGGGGGGGGGGGGAGGGAGCGGGGAGGAGGAAAGGCGCGCGGG
CCGGTGGATTGAGGGAACGTTAAAAGGGATGATAGCTAGCTTGCACCATG
GCTGATGATTTAGGCAAAGGAAGGGCAGGCTAAGGGTCTGTATGTCCAAC
ACAGGCCACTTCCTCATCCTTGTCACACCCTCTTTGCTTTCCTTCATCCC
CTCCCTCCCTCCTTTCCTTCTTTAGGCGCTCATCGAGCTCGAGGCCCTGA
CCAAGTGGCGCTACCAGTACCAGTGCAATCCTTGCTCCTATAACCGGCCC
TTCCTTCCATCCACTCTTCCTCCATACGTCTCCGCATCATCCTCCATCTC
CACCTCTGCGTGCTCCCTGTCTTCCTCGGCAAACAAAGAGGGCGGGGATG
AGGAAGGGGACGAAGGTCTGCATTCAGCGCGCACCGTTTACGATGATAAT
CGTGCCTTATTTGGAGATGCCACATTTTATGAAGATGGTACCTCTCCTTC
TCCTGATGGCTCTCTCCCTCCCCCCCTCACTCCTTCCCCGCCAGTGGGAA
AAGGCGTAATGGGAAGCAGTGAGCGGAGCGCATTTTCATCCTACGTGGCT
GGGAGCTGTGTGTGAGTTTACGGGAAGACAGGAAAAAGCGGGGAAATCAG
CGGAAGTGTGTATTATTTCAATGCAACAAGCAATTGACAAGCAAAAAAGA
AGAATGAGATTGTCTTCGCGGCCTGTGTG

Coding sequence (CDS) from alignment at scaffold_28:272905..274983+

>mRNA_8829 ID=mRNA_8829|Name=jgi.p|Nanoce1779_2|604170|organism=Nannochloropsis oceanica|type=CDS|length=5490bp|location=Sequence derived from alignment at scaffold_28:272905..274983+ (Nannochloropsis oceanica)
ATGGATCTTTGTTCCCCCTCTCGGGCGCCTCTGCGGCAGCGGAAGCTCTC
GCCAATGGCGGCTGGGGTCGACACGGAAGAGACACGGTTATTGCGGGTAA
TAGGCTTGTGTACGGCCAGTATTTTGCTACTGGACATTTGGGCCTGGATC
TCACCTGGAATGCTCGCGCGCTCGGGGACTGAGCACACCGTCAGCGACTT
TGACCCCTCCTCGTTTTTCTACCTCTTTCCCTTTACGCTGCATGCCTTGG
CAGGGCTCTGGTTCTTCACTCGCAAGCAATGTCAACCCCTTCCCTTCTGG
CGGCGCGTGGTACGCCTGCGTCTCTTCGCCCTCCTCTGCCTCGCGTTGGC
TGTGCCAGCCTTGGTCTCGCGCGTCGTCACCCTGCGAACATACTGCCACT
TAAATGGAAAAATCGAGGAGGAGGTGGAGGAGGGGAGTGCGTTCAAGGCC
TGCACAAGTGCTCGCATGACCAACACAAGTGTCATGGCCGTCGTGTACGC
CGTCCTGGGGGTGTCCATGGTCCAGGCGCTCATCGAGCTCGAGGCCCTGA
CCAAGTGGCGCTACCAGTACCAGTGCAATCCTTGCTCCTATAACCGGCCC
TTCCTTCCATCCACTCTTCCTCCATACGTCTCCGCATCATCCTCCATCTC
CACCTCTGCGTGCTCCCTGTCTTCCTCGGCAAACAAAGAGGGCGGGGATG
AGGAAGGGGACGAAGGTCTGCATTCAGCGCGCACCGTTTACGATGATAAT
CGTGCCTTATTTGGAGATGCCACATTTTATGAAGATGGTACCTCTCCTTC
TCCTGATGGCTCTCTCCCTCCCCCCCTCACTCCTTCCCCGCCAGTGGGAA
AAGGCGTAATGGGAAGCAGTGAGCGGAGCGCATTTTCATCCTACGTGGCT
GGGAGCTGTGTGTGAATGGATCTTTGTTCCCCCTCTCGGGCGCCTCTGCG
GCAGCGGAAGCTCTCGCCAATGGCGGCTGGGGTCGACACGGAAGAGACAC
GGTTATTGCGGGTAATAGGCTTGTGTACGGCCAGTATTTTGCTACTGGAC
ATTTGGGCCTGGATCTCACCTGGAATGCTCGCGCGCTCGGGGACTGAGCA
CACCGTCAGCGACTTTGACCCCTCCTCGTTTTTCTACCTCTTTCCCTTTA
CGCTGCATGCCTTGGCAGGGCTCTGGTTCTTCACTCGCAAGCAATGTCAA
CCCCTTCCCTTCTGGCGGCGCGTGGTACGCCTGCGTCTCTTCGCCCTCCT
CTGCCTCGCGTTGGCTGTGCCAGCCTTGGTCTCGCGCGTCGTCACCCTGC
GAACATACTGCCACTTAAATGGAAAAATCGAGGAGGAGGTGGAGGAGGGG
AGTGCGTTCAAGGCCTGCACAAGTGCTCGCATGACCAACACAAGTGTCAT
GGCCGTCGTGTACGCCGTCCTGGGGGTGTCCATGGTCCAGGCGCTCATCG
AGCTCGAGGCCCTGACCAAGTGGCGCTACCAGTACCAGTGCAATCCTTGC
TCCTATAACCGGCCCTTCCTTCCATCCACTCTTCCTCCATACGTCTCCGC
ATCATCCTCCATCTCCACCTCTGCGTGCTCCCTGTCTTCCTCGGCAAACA
AAGAGGGCGGGGATGAGGAAGGGGACGAAGGTCTGCATTCAGCGCGCACC
GTTTACGATGATAATCGTGCCTTATTTGGAGATGCCACATTTTATGAAGA
TGGTACCTCTCCTTCTCCTGATGGCTCTCTCCCTCCCCCCCTCACTCCTT
CCCCGCCAGTGGGAAAAGGCGTAATGGGAAGCAGTGAGCGGAGCGCATTT
TCATCCTACGTGGCTGGGAGCTGTGTGTGAATGGATCTTTGTTCCCCCTC
TCGGGCGCCTCTGCGGCAGCGGAAGCTCTCGCCAATGGCGGCTGGGGTCG
ACACGGAAGAGACACGGTTATTGCGGGTAATAGGCTTGTGTACGGCCAGT
ATTTTGCTACTGGACATTTGGGCCTGGATCTCACCTGGAATGCTCGCGCG
CTCGGGGACTGAGCACACCGTCAGCGACTTTGACCCCTCCTCGTTTTTCT
ACCTCTTTCCCTTTACGCTGCATGCCTTGGCAGGGCTCTGGTTCTTCACT
CGCAAGCAATGTCAACCCCTTCCCTTCTGGCGGCGCGTGGTACGCCTGCG
TCTCTTCGCCCTCCTCTGCCTCGCGTTGGCTGTGCCAGCCTTGGTCTCGC
GCGTCGTCACCCTGCGAACATACTGCCACTTAAATGGAAAAATCGAGGAG
GAGGTGGAGGAGGGGAGTGCGTTCAAGGCCTGCACAAGTGCTCGCATGAC
CAACACAAGTGTCATGGCCGTCGTGTACGCCGTCCTGGGGGTGTCCATGG
TCCAGGCGCTCATCGAGCTCGAGGCCCTGACCAAGTGGCGCTACCAGTAC
CAGTGCAATCCTTGCTCCTATAACCGGCCCTTCCTTCCATCCACTCTTCC
TCCATACGTCTCCGCATCATCCTCCATCTCCACCTCTGCGTGCTCCCTGT
CTTCCTCGGCAAACAAAGAGGGCGGGGATGAGGAAGGGGACGAAGGTCTG
CATTCAGCGCGCACCGTTTACGATGATAATCGTGCCTTATTTGGAGATGC
CACATTTTATGAAGATGGTACCTCTCCTTCTCCTGATGGCTCTCTCCCTC
CCCCCCTCACTCCTTCCCCGCCAGTGGGAAAAGGCGTAATGGGAAGCAGT
GAGCGGAGCGCATTTTCATCCTACGTGGCTGGGAGCTGTGTGTGAATGGA
TCTTTGTTCCCCCTCTCGGGCGCCTCTGCGGCAGCGGAAGCTCTCGCCAA
TGGCGGCTGGGGTCGACACGGAAGAGACACGGTTATTGCGGGTAATAGGC
TTGTGTACGGCCAGTATTTTGCTACTGGACATTTGGGCCTGGATCTCACC
TGGAATGCTCGCGCGCTCGGGGACTGAGCACACCGTCAGCGACTTTGACC
CCTCCTCGTTTTTCTACCTCTTTCCCTTTACGCTGCATGCCTTGGCAGGG
CTCTGGTTCTTCACTCGCAAGCAATGTCAACCCCTTCCCTTCTGGCGGCG
CGTGGTACGCCTGCGTCTCTTCGCCCTCCTCTGCCTCGCGTTGGCTGTGC
CAGCCTTGGTCTCGCGCGTCGTCACCCTGCGAACATACTGCCACTTAAAT
GGAAAAATCGAGGAGGAGGTGGAGGAGGGGAGTGCGTTCAAGGCCTGCAC
AAGTGCTCGCATGACCAACACAAGTGTCATGGCCGTCGTGTACGCCGTCC
TGGGGGTGTCCATGGTCCAGGCGCTCATCGAGCTCGAGGCCCTGACCAAG
TGGCGCTACCAGTACCAGTGCAATCCTTGCTCCTATAACCGGCCCTTCCT
TCCATCCACTCTTCCTCCATACGTCTCCGCATCATCCTCCATCTCCACCT
CTGCGTGCTCCCTGTCTTCCTCGGCAAACAAAGAGGGCGGGGATGAGGAA
GGGGACGAAGGTCTGCATTCAGCGCGCACCGTTTACGATGATAATCGTGC
CTTATTTGGAGATGCCACATTTTATGAAGATGGTACCTCTCCTTCTCCTG
ATGGCTCTCTCCCTCCCCCCCTCACTCCTTCCCCGCCAGTGGGAAAAGGC
GTAATGGGAAGCAGTGAGCGGAGCGCATTTTCATCCTACGTGGCTGGGAG
CTGTGTGTGAATGGATCTTTGTTCCCCCTCTCGGGCGCCTCTGCGGCAGC
GGAAGCTCTCGCCAATGGCGGCTGGGGTCGACACGGAAGAGACACGGTTA
TTGCGGGTAATAGGCTTGTGTACGGCCAGTATTTTGCTACTGGACATTTG
GGCCTGGATCTCACCTGGAATGCTCGCGCGCTCGGGGACTGAGCACACCG
TCAGCGACTTTGACCCCTCCTCGTTTTTCTACCTCTTTCCCTTTACGCTG
CATGCCTTGGCAGGGCTCTGGTTCTTCACTCGCAAGCAATGTCAACCCCT
TCCCTTCTGGCGGCGCGTGGTACGCCTGCGTCTCTTCGCCCTCCTCTGCC
TCGCGTTGGCTGTGCCAGCCTTGGTCTCGCGCGTCGTCACCCTGCGAACA
TACTGCCACTTAAATGGAAAAATCGAGGAGGAGGTGGAGGAGGGGAGTGC
GTTCAAGGCCTGCACAAGTGCTCGCATGACCAACACAAGTGTCATGGCCG
TCGTGTACGCCGTCCTGGGGGTGTCCATGGTCCAGGCGCTCATCGAGCTC
GAGGCCCTGACCAAGTGGCGCTACCAGTACCAGTGCAATCCTTGCTCCTA
TAACCGGCCCTTCCTTCCATCCACTCTTCCTCCATACGTCTCCGCATCAT
CCTCCATCTCCACCTCTGCGTGCTCCCTGTCTTCCTCGGCAAACAAAGAG
GGCGGGGATGAGGAAGGGGACGAAGGTCTGCATTCAGCGCGCACCGTTTA
CGATGATAATCGTGCCTTATTTGGAGATGCCACATTTTATGAAGATGGTA
CCTCTCCTTCTCCTGATGGCTCTCTCCCTCCCCCCCTCACTCCTTCCCCG
CCAGTGGGAAAAGGCGTAATGGGAAGCAGTGAGCGGAGCGCATTTTCATC
CTACGTGGCTGGGAGCTGTGTGTGAATGGATCTTTGTTCCCCCTCTCGGG
CGCCTCTGCGGCAGCGGAAGCTCTCGCCAATGGCGGCTGGGGTCGACACG
GAAGAGACACGGTTATTGCGGGTAATAGGCTTGTGTACGGCCAGTATTTT
GCTACTGGACATTTGGGCCTGGATCTCACCTGGAATGCTCGCGCGCTCGG
GGACTGAGCACACCGTCAGCGACTTTGACCCCTCCTCGTTTTTCTACCTC
TTTCCCTTTACGCTGCATGCCTTGGCAGGGCTCTGGTTCTTCACTCGCAA
GCAATGTCAACCCCTTCCCTTCTGGCGGCGCGTGGTACGCCTGCGTCTCT
TCGCCCTCCTCTGCCTCGCGTTGGCTGTGCCAGCCTTGGTCTCGCGCGTC
GTCACCCTGCGAACATACTGCCACTTAAATGGAAAAATCGAGGAGGAGGT
GGAGGAGGGGAGTGCGTTCAAGGCCTGCACAAGTGCTCGCATGACCAACA
CAAGTGTCATGGCCGTCGTGTACGCCGTCCTGGGGGTGTCCATGGTCCAG
GCGCTCATCGAGCTCGAGGCCCTGACCAAGTGGCGCTACCAGTACCAGTG
CAATCCTTGCTCCTATAACCGGCCCTTCCTTCCATCCACTCTTCCTCCAT
ACGTCTCCGCATCATCCTCCATCTCCACCTCTGCGTGCTCCCTGTCTTCC
TCGGCAAACAAAGAGGGCGGGGATGAGGAAGGGGACGAAGGTCTGCATTC
AGCGCGCACCGTTTACGATGATAATCGTGCCTTATTTGGAGATGCCACAT
TTTATGAAGATGGTACCTCTCCTTCTCCTGATGGCTCTCTCCCTCCCCCC
CTCACTCCTTCCCCGCCAGTGGGAAAAGGCGTAATGGGAAGCAGTGAGCG
GAGCGCATTTTCATCCTACGTGGCTGGGAGCTGTGTGTGA

Synonyms

Publications