jgi.p|Nanoce1779_2|221295, mRNA_8828 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|221295
Unique Name	mRNA_8828
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1317
Alignment location	scaffold_28:268598..270858 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	221381
Track	FilteredModels2
ProteinId	221295

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_28	supercontig	scaffold_28:268598..270858 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|221295	gene_8828	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|221295	mRNA_8828-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8828	CDS_8828	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_28:268598..270858-
coding sequence from alignment at scaffold_28:268598..270858-

mRNA sequence

>mRNA_8828 ID=mRNA_8828|Name=jgi.p|Nanoce1779_2|221295|organism=Nannochloropsis oceanica|type=mRNA|length=1317bp
AACAGTTATGCGTTCGCATATTATTTTTTTTCATGCGTCATGAAGCACCC
GACCGACCCGGAGGAGCTTTGCCTCGGCGTGGCGAAATAGGTCGTGGCAT
GCATGCTGATCAGGCCTCCCTAGACGGCCATTCGCTCCTCAAAAGACATA
AGATACAACTGGAGGGATCTGTCGTCGTCTCATGCGCAGTAGTGACCGTG
GTAATATTTTATGGTCACGCCGTCTCTGACAAGAAGCTTTCAATTAAGCG
CGCCACGAGAAGCGGGTATGGACGAACCAACTGTATGGACCAGAAGCAGA
AGCAGCGGGGGAGGCCAGGGAAGAGGGCACTCAGAAGGAGACAGCAACGA
TTGGGCCATTGCCACTGCTGGTCCTTTCCAAGAGCGCGTTCTCATTCCCC
GCGTCTGGCACTCCGCCGAAGCCAAGCCCGACAATGACAGCGACGGGGAG
GAGGACAGACACAGCGTGAGCAACAGCAACAGTGGTAGCAAAAGCAAAGG
CGGAGACCGTCGGGGCGGCTACAAATGCGGCCGGTGCGGGCAGCCAAAAA
AGGGTCACACGTGCACCAACAAACCGAGATTGCGCACGGCCTTCGTGGAA
ACGGCCGAGACGGACGTGCAATCAGAGATGGACCCCACCATGGTCCTCAG
AAATCTTGACACTAAGCTGCAAGGCTTCCCAGAAAGCTATGGCTTGACCT
TTCGATGGGCCCCCTCCACCGCCTCCCTATACGCTGCGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGGAAGGGCACATGGTGACCTCGCCATTGCA
GCACTCCCCGCACCAACAACACCAACACCAACACCAACACCAACAGCAGC
ATCCTCTATATGTGCACCAAGTAGGAGTGGGGGCGGAGGAAGCACCGTAT
TATGCACAGGGGCAGCAGCAGCTTCAGCAGCCTGCAGGGTTAGGTGGAGG
AGGAGTTGAGGGAGGAGGCGGTTACCACGCGTACTATCCGCAAACAGGAG
TAGTAGGAGTTGGAGGGGGAGAAGGAGTAGTAGAAAGAGGGGGAGAACAA
AGCGGACAACAACGCCGGTTTTATTGAGAACGAAAAAGAAGACATTGTAC
ATAAATGAATGTGTGTGATCGGTACATAGCAAAAAAGAGGGAGACACGTG
TGAGTGAGGAGTGAGTTGGGGGAGTCGGCTGTGTGAACAGACTGACAGAG
ATGCTGCATCACGTGCTTACAGACCAAAGGCACAATTTTAAAGTATTTCC
AATCTTCATGAAAGAATTAAGACCCGAGTGTGGGTGTGACAGTGGTGCCC
GAGAATCGACCCACTGG

protein sequence of jgi.p|Nanoce1779_2|221295

>mRNA_8828-protein ID=mRNA_8828-protein|Name=jgi.p|Nanoce1779_2|221295|organism=Nannochloropsis oceanica|type=polypeptide|length=289bp
MVTPSLTRSFQLSAPREAGMDEPTVWTRSRSSGGGQGRGHSEGDSNDWAI
ATAGPFQERVLIPRVWHSAEAKPDNDSDGEEDRHSVSNSNSGSKSKGGDR
RGGYKCGRCGQPKKGHTCTNKPRLRTAFVETAETDVQSEMDPTMVLRNLD
TKLQGFPESYGLTFRWAPSTASLYAAQQQQQQQQQQQEGHMVTSPLQHSP
HQQHQHQHQHQQQHPLYVHQVGVGAEEAPYYAQGQQQLQQPAGLGGGGVE
GGGGYHAYYPQTGVVGVGGGEGVVERGGEQSGQQRRFY*

mRNA from alignment at scaffold_28:268598..270858-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8828 ID=mRNA_8828|Name=jgi.p|Nanoce1779_2|221295|organism=Nannochloropsis oceanica|type=mRNA|length=2261bp|location=Sequence derived from alignment at scaffold_28:268598..270858- (Nannochloropsis oceanica)
AACAGTTATGCGTTCGCATATTATTTTTTTTCATGCGTCATGAAGCACCC
GACCGACCCGGAGGAGCTTTGCCTCGGCGTGGCGAAATAGGTCGTGGCAT
GCATGCTGATCAGGCCTCCCTAGACGGCCATTCGCTCCTCAAAAGACATA
AGATACAACTGGAGGGATCTGTCGTCGTCTCATGCGCAGTAGTGACCGTG
GTAATATTTTATGGTCACGCCGTCTCTGGTCGGGTTTGACTCTTTCCTGT
TCTGCTTGACTCAAAGCTGATGCGCACCTTGGCAACCTCACACCATGTAC
CCTTTGCCCCCCCCTCCATCTCCTTTTTCCCCATAGACAAGAAGCTTTCA
ATTAAGCGCGCCACGAGAAGCGGGTATGGACGAACCAACTGTATGGACCA
GAAGCAGAAGCAGCGGGGGAGGCCAGGGAAGAGGGCACTCAGAAGGAGAC
AGCAACGATTGGGGTAAGATGGAGGGACGATAAGACGTCAAAGACGGGGA
AGGCGTGATCGAAAAAGTAGAGAGGATTGAGAGAGCCTTTTTGATGGAGA
GTGCGAGAGAAGCGGGGAAGTAGTGGACTGGCGCTGTATTGTGGGGTTGT
GTATCGCCCCTCTGTCTGCCACTCTATGTACACGTGTCGGAGTACGGCCA
TCTCGCACCACCATCACCTATGCTGCACGACTGCTCGCATTAATTGTAAC
CTTTCGTTCATATTGTCCATGAGATCATCACCTGTCTCATCCCTCCTCCC
TCTTTCCTTCCCCTCCTTTCTCAGCCATTGCCACTGCTGGTCCTTTCCAA
GAGCGCGTTCTCATTCCCCGCGTCTGGCACTCCGCCGAAGCCAAGCCCGA
CAATGACAGCGACGGGGAGGAGGACAGACACAGCGTGAGCAACAGCAACA
GTGGTAGCAAAAGTGAGTGGAGGAAGGGAGTTTGAGGGAAGGAGGGGGAA
GAAGGGTCTGTGGCATCTGATCTGTGTTACTTATCTGGCACCTTGTCGCT
TTCCATCCACTCATTTTCTCCTGCCCTCCTTCCACCCCAGGCAAAGGCGG
AGACCGTCGGGGCGGCTACAAATGCGGCCGGTGCGGGCAGCCAAAAAAGG
GTCACACGTGCACCAACAAACCGAGATTGCGCACGGCCTGTACGTGTTGA
AGAGGGAGGGGGAGGAGGGAATGGGGACGAGGGGGATCAACAAGGGAGGG
ATGGTAGGTAGGACTGAATAGGGCAGAGTCTCGCTACAGATATCTTCTGT
ATATATCTCATGATCAAGTCTCTCGGAGTCTGTTTCGATCGTCACTAATT
TTCACCCTCCTCTGCCATCCTCCTTCCCTGCCCTTCCTTCCCTCCCTCCC
TCCCTCCCTTCTAGTCGTGGAAACGGCCGAGACGGACGTGCAATCAGAGA
TGGACCCCACCATGGTCCTCAGAAATCTTGACACTAAGCTGCAAGGTAGG
GAGGGTGGAAGTAGAGGGTGGGATCGGAGGGTAACCGGTAACCGTAACCG
CGGGAGGATTGAATAGAACTGGTTTAAACTCCCGGAGTAGAGATTCGACT
TAGAATTTAACCCTGTCCTTTCCTTTCTTACTTCCCCCACTTTCCCTCAA
TGCCCCTCTCTGTTTAGGCTTCCCAGAAAGCTATGGCTTGACCTTTCGAT
GGGCCCCCTCCACCGCCTCCCTATACGCTGCGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGGAAGGGCACATGGTGACCTCGCCATTGCAGCACTC
CCCGCACCAACAACACCAACACCAACACCAACACCAACAGCAGCATCCTC
TATATGTGCACCAAGTAGGAGTGGGGGCGGAGGAAGCACCGTATTATGCA
CAGGGGCAGCAGCAGCTTCAGCAGCCTGCAGGGTTAGGTGGAGGAGGAGT
TGAGGGAGGAGGCGGTTACCACGCGTACTATCCGCAAACAGGAGTAGTAG
GAGTTGGAGGGGGAGAAGGAGTAGTAGAAAGAGGGGGAGAACAAAGCGGA
CAACAACGCCGGTTTTATTGAGAACGAAAAAGAAGACATTGTACATAAAT
GAATGTGTGTGATCGGTACATAGCAAAAAAGAGGGAGACACGTGTGAGTG
AGGAGTGAGTTGGGGGAGTCGGCTGTGTGAACAGACTGACAGAGATGCTG
CATCACGTGCTTACAGACCAAAGGCACAATTTTAAAGTATTTCCAATCTT
CATGAAAGAATTAAGACCCGAGTGTGGGTGTGACAGTGGTGCCCGAGAAT
CGACCCACTGG

Coding sequence (CDS) from alignment at scaffold_28:268598..270858-

>mRNA_8828 ID=mRNA_8828|Name=jgi.p|Nanoce1779_2|221295|organism=Nannochloropsis oceanica|type=CDS|length=5202bp|location=Sequence derived from alignment at scaffold_28:268598..270858- (Nannochloropsis oceanica)
GCTTCCCAGAAAGCTATGGCTTGACCTTTCGATGGGCCCCCTCCACCGCC
TCCCTATACGCTGCGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGA
AGGGCACATGGTGACCTCGCCATTGCAGCACTCCCCGCACCAACAACACC
AACACCAACACCAACACCAACAGCAGCATCCTCTATATGTGCACCAAGTA
GGAGTGGGGGCGGAGGAAGCACCGTATTATGCACAGGGGCAGCAGCAGCT
TCAGCAGCCTGCAGGGTTAGGTGGAGGAGGAGTTGAGGGAGGAGGCGGTT
ACCACGCGTACTATCCGCAAACAGGAGTAGTAGGAGTTGGAGGGGGAGAA
GGAGTAGTAGAAAGAGGGGGAGAACAAAGCGGACAACAACGCCGGTTTTA
TTGATCGTGGAAACGGCCGAGACGGACGTGCAATCAGAGATGGACCCCAC
CATGGTCCTCAGAAATCTTGACACTAAGCTGCAAGGCAAAGGCGGAGACC
GTCGGGGCGGCTACAAATGCGGCCGGTGCGGGCAGCCAAAAAAGGGTCAC
ACGTGCACCAACAAACCGAGATTGCGCACGGCCTCCATTGCCACTGCTGG
TCCTTTCCAAGAGCGCGTTCTCATTCCCCGCGTCTGGCACTCCGCCGAAG
CCAAGCCCGACAATGACAGCGACGGGGAGGAGGACAGACACAGCGTGAGC
AACAGCAACAGTGGTAGCAAAAACAAGAAGCTTTCAATTAAGCGCGCCAC
GAGAAGCGGGTATGGACGAACCAACTGTATGGACCAGAAGCAGAAGCAGC
GGGGGAGGCCAGGGAAGAGGGCACTCAGAAGGAGACAGCAACGATTGGGA
TGGTCACGCCGTCTCTGGCTTCCCAGAAAGCTATGGCTTGACCTTTCGAT
GGGCCCCCTCCACCGCCTCCCTATACGCTGCGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGGAAGGGCACATGGTGACCTCGCCATTGCAGCACTC
CCCGCACCAACAACACCAACACCAACACCAACACCAACAGCAGCATCCTC
TATATGTGCACCAAGTAGGAGTGGGGGCGGAGGAAGCACCGTATTATGCA
CAGGGGCAGCAGCAGCTTCAGCAGCCTGCAGGGTTAGGTGGAGGAGGAGT
TGAGGGAGGAGGCGGTTACCACGCGTACTATCCGCAAACAGGAGTAGTAG
GAGTTGGAGGGGGAGAAGGAGTAGTAGAAAGAGGGGGAGAACAAAGCGGA
CAACAACGCCGGTTTTATTGATCGTGGAAACGGCCGAGACGGACGTGCAA
TCAGAGATGGACCCCACCATGGTCCTCAGAAATCTTGACACTAAGCTGCA
AGGCAAAGGCGGAGACCGTCGGGGCGGCTACAAATGCGGCCGGTGCGGGC
AGCCAAAAAAGGGTCACACGTGCACCAACAAACCGAGATTGCGCACGGCC
TCCATTGCCACTGCTGGTCCTTTCCAAGAGCGCGTTCTCATTCCCCGCGT
CTGGCACTCCGCCGAAGCCAAGCCCGACAATGACAGCGACGGGGAGGAGG
ACAGACACAGCGTGAGCAACAGCAACAGTGGTAGCAAAAACAAGAAGCTT
TCAATTAAGCGCGCCACGAGAAGCGGGTATGGACGAACCAACTGTATGGA
CCAGAAGCAGAAGCAGCGGGGGAGGCCAGGGAAGAGGGCACTCAGAAGGA
GACAGCAACGATTGGGATGGTCACGCCGTCTCTGGCTTCCCAGAAAGCTA
TGGCTTGACCTTTCGATGGGCCCCCTCCACCGCCTCCCTATACGCTGCGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGAAGGGCACATGGTGACC
TCGCCATTGCAGCACTCCCCGCACCAACAACACCAACACCAACACCAACA
CCAACAGCAGCATCCTCTATATGTGCACCAAGTAGGAGTGGGGGCGGAGG
AAGCACCGTATTATGCACAGGGGCAGCAGCAGCTTCAGCAGCCTGCAGGG
TTAGGTGGAGGAGGAGTTGAGGGAGGAGGCGGTTACCACGCGTACTATCC
GCAAACAGGAGTAGTAGGAGTTGGAGGGGGAGAAGGAGTAGTAGAAAGAG
GGGGAGAACAAAGCGGACAACAACGCCGGTTTTATTGATCGTGGAAACGG
CCGAGACGGACGTGCAATCAGAGATGGACCCCACCATGGTCCTCAGAAAT
CTTGACACTAAGCTGCAAGGCAAAGGCGGAGACCGTCGGGGCGGCTACAA
ATGCGGCCGGTGCGGGCAGCCAAAAAAGGGTCACACGTGCACCAACAAAC
CGAGATTGCGCACGGCCTCCATTGCCACTGCTGGTCCTTTCCAAGAGCGC
GTTCTCATTCCCCGCGTCTGGCACTCCGCCGAAGCCAAGCCCGACAATGA
CAGCGACGGGGAGGAGGACAGACACAGCGTGAGCAACAGCAACAGTGGTA
GCAAAAACAAGAAGCTTTCAATTAAGCGCGCCACGAGAAGCGGGTATGGA
CGAACCAACTGTATGGACCAGAAGCAGAAGCAGCGGGGGAGGCCAGGGAA
GAGGGCACTCAGAAGGAGACAGCAACGATTGGGATGGTCACGCCGTCTCT
GGCTTCCCAGAAAGCTATGGCTTGACCTTTCGATGGGCCCCCTCCACCGC
CTCCCTATACGCTGCGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGG
AAGGGCACATGGTGACCTCGCCATTGCAGCACTCCCCGCACCAACAACAC
CAACACCAACACCAACACCAACAGCAGCATCCTCTATATGTGCACCAAGT
AGGAGTGGGGGCGGAGGAAGCACCGTATTATGCACAGGGGCAGCAGCAGC
TTCAGCAGCCTGCAGGGTTAGGTGGAGGAGGAGTTGAGGGAGGAGGCGGT
TACCACGCGTACTATCCGCAAACAGGAGTAGTAGGAGTTGGAGGGGGAGA
AGGAGTAGTAGAAAGAGGGGGAGAACAAAGCGGACAACAACGCCGGTTTT
ATTGATCGTGGAAACGGCCGAGACGGACGTGCAATCAGAGATGGACCCCA
CCATGGTCCTCAGAAATCTTGACACTAAGCTGCAAGGCAAAGGCGGAGAC
CGTCGGGGCGGCTACAAATGCGGCCGGTGCGGGCAGCCAAAAAAGGGTCA
CACGTGCACCAACAAACCGAGATTGCGCACGGCCTCCATTGCCACTGCTG
GTCCTTTCCAAGAGCGCGTTCTCATTCCCCGCGTCTGGCACTCCGCCGAA
GCCAAGCCCGACAATGACAGCGACGGGGAGGAGGACAGACACAGCGTGAG
CAACAGCAACAGTGGTAGCAAAAACAAGAAGCTTTCAATTAAGCGCGCCA
CGAGAAGCGGGTATGGACGAACCAACTGTATGGACCAGAAGCAGAAGCAG
CGGGGGAGGCCAGGGAAGAGGGCACTCAGAAGGAGACAGCAACGATTGGG
ATGGTCACGCCGTCTCTGGCTTCCCAGAAAGCTATGGCTTGACCTTTCGA
TGGGCCCCCTCCACCGCCTCCCTATACGCTGCGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGGAAGGGCACATGGTGACCTCGCCATTGCAGCACT
CCCCGCACCAACAACACCAACACCAACACCAACACCAACAGCAGCATCCT
CTATATGTGCACCAAGTAGGAGTGGGGGCGGAGGAAGCACCGTATTATGC
ACAGGGGCAGCAGCAGCTTCAGCAGCCTGCAGGGTTAGGTGGAGGAGGAG
TTGAGGGAGGAGGCGGTTACCACGCGTACTATCCGCAAACAGGAGTAGTA
GGAGTTGGAGGGGGAGAAGGAGTAGTAGAAAGAGGGGGAGAACAAAGCGG
ACAACAACGCCGGTTTTATTGATCGTGGAAACGGCCGAGACGGACGTGCA
ATCAGAGATGGACCCCACCATGGTCCTCAGAAATCTTGACACTAAGCTGC
AAGGCAAAGGCGGAGACCGTCGGGGCGGCTACAAATGCGGCCGGTGCGGG
CAGCCAAAAAAGGGTCACACGTGCACCAACAAACCGAGATTGCGCACGGC
CTCCATTGCCACTGCTGGTCCTTTCCAAGAGCGCGTTCTCATTCCCCGCG
TCTGGCACTCCGCCGAAGCCAAGCCCGACAATGACAGCGACGGGGAGGAG
GACAGACACAGCGTGAGCAACAGCAACAGTGGTAGCAAAAACAAGAAGCT
TTCAATTAAGCGCGCCACGAGAAGCGGGTATGGACGAACCAACTGTATGG
ACCAGAAGCAGAAGCAGCGGGGGAGGCCAGGGAAGAGGGCACTCAGAAGG
AGACAGCAACGATTGGGATGGTCACGCCGTCTCTGGCTTCCCAGAAAGCT
ATGGCTTGACCTTTCGATGGGCCCCCTCCACCGCCTCCCTATACGCTGCG
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGAAGGGCACATGGTGAC
CTCGCCATTGCAGCACTCCCCGCACCAACAACACCAACACCAACACCAAC
ACCAACAGCAGCATCCTCTATATGTGCACCAAGTAGGAGTGGGGGCGGAG
GAAGCACCGTATTATGCACAGGGGCAGCAGCAGCTTCAGCAGCCTGCAGG
GTTAGGTGGAGGAGGAGTTGAGGGAGGAGGCGGTTACCACGCGTACTATC
CGCAAACAGGAGTAGTAGGAGTTGGAGGGGGAGAAGGAGTAGTAGAAAGA
GGGGGAGAACAAAGCGGACAACAACGCCGGTTTTATTGATCGTGGAAACG
GCCGAGACGGACGTGCAATCAGAGATGGACCCCACCATGGTCCTCAGAAA
TCTTGACACTAAGCTGCAAGGCAAAGGCGGAGACCGTCGGGGCGGCTACA
AATGCGGCCGGTGCGGGCAGCCAAAAAAGGGTCACACGTGCACCAACAAA
CCGAGATTGCGCACGGCCTCCATTGCCACTGCTGGTCCTTTCCAAGAGCG
CGTTCTCATTCCCCGCGTCTGGCACTCCGCCGAAGCCAAGCCCGACAATG
ACAGCGACGGGGAGGAGGACAGACACAGCGTGAGCAACAGCAACAGTGGT
AGCAAAAACAAGAAGCTTTCAATTAAGCGCGCCACGAGAAGCGGGTATGG
ACGAACCAACTGTATGGACCAGAAGCAGAAGCAGCGGGGGAGGCCAGGGA
AGAGGGCACTCAGAAGGAGACAGCAACGATTGGGATGGTCACGCCGTCTC
TG

Synonyms

Publications