jgi.p|Nanoce1779_2|221225, mRNA_8827 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|221225
Unique NamemRNA_8827
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length393
Alignment locationscaffold_28:267993..268596 -

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Properties
Property NameValue
TranscriptId221311
TrackFilteredModels2
ProteinId221225
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_28supercontigscaffold_28:267993..268596 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|221225gene_8827Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|221225mRNA_8827-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8827CDS_8827Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8827 ID=mRNA_8827|Name=jgi.p|Nanoce1779_2|221225|organism=Nannochloropsis oceanica|type=mRNA|length=393bp
CCATTAGCTTCTGATGACATGAGCTCGCTTGCTTCGGGTGGCCTTGACCC
TTTGCTTTTTGTCTGCTTGCTTTTTTCATGCACCAAACGCTTGTCATGCG
CACGCAATTACTTTGTCACAGCTTTTTCCTTGGTCAGGTGATTGTCCGGG
CGAAAGGCAAGTGCCAACAGGGGACAGCCAGACTTGGATCGCACCTTGCA
GACCTTCCACTTCAGATACACAGCAAAGGCTCCTCCGTCTCTCATCCTCT
CCTTCACTCCCTTCCGACACACAGCATTTCTCGCATAAGTAGTAAGTAGT
ACCAGTCTTTGTTGGTACCTGCCCAATATGGCCCGCTATTCGATCCTCCT
TCGTGGCCTGATCCTCGCGGCCGTCCTCTGCGTCTTGGCTCAC
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protein sequence of jgi.p|Nanoce1779_2|221225

>mRNA_8827-protein ID=mRNA_8827-protein|Name=jgi.p|Nanoce1779_2|221225|organism=Nannochloropsis oceanica|type=polypeptide|length=74bp
MHQTLVMRTQLLCHSFFLGQVIVRAKGKCQQGTARLGSHLADLPLQIHSK
GSSVSHPLLHSLPTHSISRISSK*
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mRNA from alignment at scaffold_28:267993..268596-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8827 ID=mRNA_8827|Name=jgi.p|Nanoce1779_2|221225|organism=Nannochloropsis oceanica|type=mRNA|length=604bp|location=Sequence derived from alignment at scaffold_28:267993..268596- (Nannochloropsis oceanica)
CCATTAGCTTCTGATGACATGAGCTCGCTTGCTTCGGGTGGCCTTGACCC
TTTGCTTTTTGTCTGCTTGCTTTTTTCATGCACCAAACGCTTGTCATGCG
CACGCAATTACTTTGTCACAGCTTTTTCCTTGGTCAGGTGATTGTCCGGG
CGAAAGGCAAGTGCCAACAGGGGACAGCCAGACTTGGATCGCACCTTGCA
GACCTTCCACTTCAGATACACAGCAAAGGCTCCTCCGTCTCTCATCCTCT
CCTTCACTCCCTTCCGACACACAGCATTTCTCGCATAAGTAGTAAGTAGT
ACCAGTCTTTGTTGGTACCTGCCCAATATGGCCCGCTATTCGATCCTCCT
TCGTGGCCTGATCCTCGCGGCCGTCCTCTGCGTCTTGGGTGAGTGCCTGC
CCCTCCAGGCCGCTGGTGTTGGTTACCCTCTTATCACTTTGTCTCCTTGG
TTTCACTCCCTCTAGTATACGGGGGGGGGATATAACAATCGTCAGGATTT
GTTGGGGACTGGTTCAGGTTCTATCGTTCCATTTCCCGTCCCGTCCCTCC
CTCCCTCGCCCCCTCACCCTCTCCCTCACCTCTCTCCTTCCCATTCTAGC
TCAC
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Coding sequence (CDS) from alignment at scaffold_28:267993..268596-

>mRNA_8827 ID=mRNA_8827|Name=jgi.p|Nanoce1779_2|221225|organism=Nannochloropsis oceanica|type=CDS|length=222bp|location=Sequence derived from alignment at scaffold_28:267993..268596- (Nannochloropsis oceanica)
ATGCACCAAACGCTTGTCATGCGCACGCAATTACTTTGTCACAGCTTTTT
CCTTGGTCAGGTGATTGTCCGGGCGAAAGGCAAGTGCCAACAGGGGACAG
CCAGACTTGGATCGCACCTTGCAGACCTTCCACTTCAGATACACAGCAAA
GGCTCCTCCGTCTCTCATCCTCTCCTTCACTCCCTTCCGACACACAGCAT
TTCTCGCATAAGTAGTAAGTAG
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Synonyms
Publications