jgi.p|Nanoce1779_2|604160, mRNA_8826 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|604160
Unique NamemRNA_8826
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length858
Alignment locationscaffold_28:266980..268326 -

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Properties
Property NameValue
TranscriptId604246
TrackFilteredModels2
ProteinId604160
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_28supercontigscaffold_28:266980..268326 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|604160gene_8826Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|604160mRNA_8826-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8826CDS_8826Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8826 ID=mRNA_8826|Name=jgi.p|Nanoce1779_2|604160|organism=Nannochloropsis oceanica|type=mRNA|length=858bp
ACAGCATTTCTCGCATAAGTAGTAAGTAGTACCAGTCTTTGTTGGTACCT
GCCCAATATGGCCCGCTATTCGATCCTCCTTCGTGGCCTGATCCTCGCGG
CCGTCCTCTGCGTCTTGGCTCACGGCAAGGCTTCATTAGACATTTGCGAG
GTGAAGGAAAATGAGGTAGTGGACAAAGTAACGGGTATTTCCTTCCCCAT
CCATCGCTCCTTTCCCTATGCCGGCAAAAGCAAGGATTTTTCCCTCATGG
GGGCGGGGCCACGAAGGAAGAATTTGTTTGTGGTGGAAGTTAATAGTGCC
CACCTAGGGAAGCTCAAAGGCTTTAAAGGGAAGGATGCGGACAGCTTGAG
TAAGGAGAAGGGTTACTATGCCCTGCTAACAAAGGAGAAAAGCGGGATGA
ATCGAGCCTTGGAGCTGGTGTTTGCGCGAGCAGTACCCGCGGGGAAGGTG
GTTGAAGCGCTGTCTGCACTGGAAGGAGTGGAGGAGAAGATTCTGACGGA
CTTCAAGGAAAAGCTGTTGGCGGCTATAGGGACATCGGCCGGAAAAGGGG
AGACCATCACCCTGGCGTGGACGGCCGATGATAAGCTGGCCCTCTCTGTC
CGCAACAAGCATGTTAAGACGTTCCCTAGCATGGCGCTGGCCAGTGGTAT
CTTCGGCCTTTACATGGGTGACAAGGCCATCTCACCCGAGGCCAAGAAGG
GGTTCGCGGCTGTCGCGCCCCAGCACTTGAAGTAGAGAAGTGAAGAGGGA
AGACAAGGGAAGGAGAGAAGGAAGGAGATGTGTTGAGGGAAATGTGCTCA
TTTGTGTGGGGACAAATAGCAAGGAAAGGAAGGAGGAAAAGAGGGAGGGA
AGGAGGGA
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protein sequence of jgi.p|Nanoce1779_2|604160

>mRNA_8826-protein ID=mRNA_8826-protein|Name=jgi.p|Nanoce1779_2|604160|organism=Nannochloropsis oceanica|type=polypeptide|length=226bp
MARYSILLRGLILAAVLCVLAHGKASLDICEVKENEVVDKVTGISFPIHR
SFPYAGKSKDFSLMGAGPRRKNLFVVEVNSAHLGKLKGFKGKDADSLSKE
KGYYALLTKEKSGMNRALELVFARAVPAGKVVEALSALEGVEEKILTDFK
EKLLAAIGTSAGKGETITLAWTADDKLALSVRNKHVKTFPSMALASGIFG
LYMGDKAISPEAKKGFAAVAPQHLK*
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mRNA from alignment at scaffold_28:266980..268326-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8826 ID=mRNA_8826|Name=jgi.p|Nanoce1779_2|604160|organism=Nannochloropsis oceanica|type=mRNA|length=1347bp|location=Sequence derived from alignment at scaffold_28:266980..268326- (Nannochloropsis oceanica)
ACAGCATTTCTCGCATAAGTAGTAAGTAGTACCAGTCTTTGTTGGTACCT
GCCCAATATGGCCCGCTATTCGATCCTCCTTCGTGGCCTGATCCTCGCGG
CCGTCCTCTGCGTCTTGGGTGAGTGCCTGCCCCTCCAGGCCGCTGGTGTT
GGTTACCCTCTTATCACTTTGTCTCCTTGGTTTCACTCCCTCTAGTATAC
GGGGGGGGGATATAACAATCGTCAGGATTTGTTGGGGACTGGTTCAGGTT
CTATCGTTCCATTTCCCGTCCCGTCCCTCCCTCCCTCGCCCCCTCACCCT
CTCCCTCACCTCTCTCCTTCCCATTCTAGCTCACGGCAAGGCTTCATTAG
ACATTTGCGAGGTGAAGGAAAATGAGGTAGTGGACAAAGTAACGGGTATT
TCCTTCCCCATCCATCGCTCCTTTCCCTATGCCGGCAAAAGCAAGGATTT
TTCCCTCATGGGGGCGGGGCCACGAAGGAAGAATTTGTTTGTGGTGGAAG
TTAATGTTTACGGCGGTCGGCCTGTATGTGGAGAGTGCCCACCTAGGGAA
GCTCAAAGGCTTTAAAGGGAAGGATGCGGACAGCTTGAGTAAGGAGAAGG
GTTACTATGCCCTGCTAACAAAGGAGAAAAGCGGGATGAATCGAGCCTTG
GAGCTGGTGTTTGCGCGAGCAGTACCCGCGGGGAAGGTGGTTGAAGCGCT
GTCTGCACTGGAAGGAGTGGAGGAGAAGATTCTGACGGACTTCAAGGAAA
AGCTGTTGGCGGCTATAGGGACATCGGCCGGAAAAGGGGAGACCATCACC
CTGGCGTGGACGGTCAGTGCGAGGGAGAGGGAGGGAAGGGGAAAGACCAG
TGAAGACCGTTGGGACGACTTCGGAAAAGAGGAGCTTCTCCCTGTCAATC
TATGTTTCCTCCTTTACCTTCCTATCCCCCTCTCAGCTGTCTAGCAGGCA
TTCCCCAGCCTGGAACGGCACGGAGTACTTTCAGGTCGCACATGGACGAT
AAGGTTCTCATTCTCAATCCCCTTCCTTTATCCTCCCTCCCTTCCTTCCT
TCCTCCCCCTAGGCCGATGATAAGCTGGCCCTCTCTGTCCGCAACAAGCA
TGTTAAGACGTTCCCTAGCATGGCGCTGGCCAGTGGTATCTTCGGCCTTT
ACATGGGTGACAAGGCCATCTCACCCGAGGCCAAGAAGGGGTTCGCGGCT
GTCGCGCCCCAGCACTTGAAGTAGAGAAGTGAAGAGGGAAGACAAGGGAA
GGAGAGAAGGAAGGAGATGTGTTGAGGGAAATGTGCTCATTTGTGTGGGG
ACAAATAGCAAGGAAAGGAAGGAGGAAAAGAGGGAGGGAAGGAGGGA
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Coding sequence (CDS) from alignment at scaffold_28:266980..268326-

>mRNA_8826 ID=mRNA_8826|Name=jgi.p|Nanoce1779_2|604160|organism=Nannochloropsis oceanica|type=CDS|length=2712bp|location=Sequence derived from alignment at scaffold_28:266980..268326- (Nannochloropsis oceanica)
GCCGATGATAAGCTGGCCCTCTCTGTCCGCAACAAGCATGTTAAGACGTT
CCCTAGCATGGCGCTGGCCAGTGGTATCTTCGGCCTTTACATGGGTGACA
AGGCCATCTCACCCGAGGCCAAGAAGGGGTTCGCGGCTGTCGCGCCCCAG
CACTTGAAGTAGAGTGCCCACCTAGGGAAGCTCAAAGGCTTTAAAGGGAA
GGATGCGGACAGCTTGAGTAAGGAGAAGGGTTACTATGCCCTGCTAACAA
AGGAGAAAAGCGGGATGAATCGAGCCTTGGAGCTGGTGTTTGCGCGAGCA
GTACCCGCGGGGAAGGTGGTTGAAGCGCTGTCTGCACTGGAAGGAGTGGA
GGAGAAGATTCTGACGGACTTCAAGGAAAAGCTGTTGGCGGCTATAGGGA
CATCGGCCGGAAAAGGGGAGACCATCACCCTGGCGTGGACGCTCACGGCA
AGGCTTCATTAGACATTTGCGAGGTGAAGGAAAATGAGGTAGTGGACAAA
GTAACGGGTATTTCCTTCCCCATCCATCGCTCCTTTCCCTATGCCGGCAA
AAGCAAGGATTTTTCCCTCATGGGGGCGGGGCCACGAAGGAAGAATTTGT
TTGTGGTGGAAGTTAATATGGCCCGCTATTCGATCCTCCTTCGTGGCCTG
ATCCTCGCGGCCGTCCTCTGCGTCTTGGGCCGATGATAAGCTGGCCCTCT
CTGTCCGCAACAAGCATGTTAAGACGTTCCCTAGCATGGCGCTGGCCAGT
GGTATCTTCGGCCTTTACATGGGTGACAAGGCCATCTCACCCGAGGCCAA
GAAGGGGTTCGCGGCTGTCGCGCCCCAGCACTTGAAGTAGAGTGCCCACC
TAGGGAAGCTCAAAGGCTTTAAAGGGAAGGATGCGGACAGCTTGAGTAAG
GAGAAGGGTTACTATGCCCTGCTAACAAAGGAGAAAAGCGGGATGAATCG
AGCCTTGGAGCTGGTGTTTGCGCGAGCAGTACCCGCGGGGAAGGTGGTTG
AAGCGCTGTCTGCACTGGAAGGAGTGGAGGAGAAGATTCTGACGGACTTC
AAGGAAAAGCTGTTGGCGGCTATAGGGACATCGGCCGGAAAAGGGGAGAC
CATCACCCTGGCGTGGACGCTCACGGCAAGGCTTCATTAGACATTTGCGA
GGTGAAGGAAAATGAGGTAGTGGACAAAGTAACGGGTATTTCCTTCCCCA
TCCATCGCTCCTTTCCCTATGCCGGCAAAAGCAAGGATTTTTCCCTCATG
GGGGCGGGGCCACGAAGGAAGAATTTGTTTGTGGTGGAAGTTAATATGGC
CCGCTATTCGATCCTCCTTCGTGGCCTGATCCTCGCGGCCGTCCTCTGCG
TCTTGGGCCGATGATAAGCTGGCCCTCTCTGTCCGCAACAAGCATGTTAA
GACGTTCCCTAGCATGGCGCTGGCCAGTGGTATCTTCGGCCTTTACATGG
GTGACAAGGCCATCTCACCCGAGGCCAAGAAGGGGTTCGCGGCTGTCGCG
CCCCAGCACTTGAAGTAGAGTGCCCACCTAGGGAAGCTCAAAGGCTTTAA
AGGGAAGGATGCGGACAGCTTGAGTAAGGAGAAGGGTTACTATGCCCTGC
TAACAAAGGAGAAAAGCGGGATGAATCGAGCCTTGGAGCTGGTGTTTGCG
CGAGCAGTACCCGCGGGGAAGGTGGTTGAAGCGCTGTCTGCACTGGAAGG
AGTGGAGGAGAAGATTCTGACGGACTTCAAGGAAAAGCTGTTGGCGGCTA
TAGGGACATCGGCCGGAAAAGGGGAGACCATCACCCTGGCGTGGACGCTC
ACGGCAAGGCTTCATTAGACATTTGCGAGGTGAAGGAAAATGAGGTAGTG
GACAAAGTAACGGGTATTTCCTTCCCCATCCATCGCTCCTTTCCCTATGC
CGGCAAAAGCAAGGATTTTTCCCTCATGGGGGCGGGGCCACGAAGGAAGA
ATTTGTTTGTGGTGGAAGTTAATATGGCCCGCTATTCGATCCTCCTTCGT
GGCCTGATCCTCGCGGCCGTCCTCTGCGTCTTGGGCCGATGATAAGCTGG
CCCTCTCTGTCCGCAACAAGCATGTTAAGACGTTCCCTAGCATGGCGCTG
GCCAGTGGTATCTTCGGCCTTTACATGGGTGACAAGGCCATCTCACCCGA
GGCCAAGAAGGGGTTCGCGGCTGTCGCGCCCCAGCACTTGAAGTAGAGTG
CCCACCTAGGGAAGCTCAAAGGCTTTAAAGGGAAGGATGCGGACAGCTTG
AGTAAGGAGAAGGGTTACTATGCCCTGCTAACAAAGGAGAAAAGCGGGAT
GAATCGAGCCTTGGAGCTGGTGTTTGCGCGAGCAGTACCCGCGGGGAAGG
TGGTTGAAGCGCTGTCTGCACTGGAAGGAGTGGAGGAGAAGATTCTGACG
GACTTCAAGGAAAAGCTGTTGGCGGCTATAGGGACATCGGCCGGAAAAGG
GGAGACCATCACCCTGGCGTGGACGCTCACGGCAAGGCTTCATTAGACAT
TTGCGAGGTGAAGGAAAATGAGGTAGTGGACAAAGTAACGGGTATTTCCT
TCCCCATCCATCGCTCCTTTCCCTATGCCGGCAAAAGCAAGGATTTTTCC
CTCATGGGGGCGGGGCCACGAAGGAAGAATTTGTTTGTGGTGGAAGTTAA
TATGGCCCGCTATTCGATCCTCCTTCGTGGCCTGATCCTCGCGGCCGTCC
TCTGCGTCTTGG
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Synonyms
Publications