jgi.p|Nanoce1779_2|221143, mRNA_8824 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|221143
Unique Name	mRNA_8824
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	757
Alignment location	scaffold_28:260263..261163 -

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Properties


Property Name	Value
TranscriptId	221229
Track	FilteredModels2
ProteinId	221143

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_28	supercontig	scaffold_28:260263..261163 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|221143	gene_8824	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|221143	mRNA_8824-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8824	CDS_8824	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_28:260263..261163-
coding sequence from alignment at scaffold_28:260263..261163-

mRNA sequence

>mRNA_8824 ID=mRNA_8824|Name=jgi.p|Nanoce1779_2|221143|organism=Nannochloropsis oceanica|type=mRNA|length=757bp
CCACACTCACTGACTCTCTTGACTCCCTACCTCTAACCCTCATGCCCAGG
CAATGGGCACCGTGCTCACTCCCGTCCACACTCACTGACTCTCTTGACTC
CCTACCTCTAACCCTCATGCCCAGGCAATGGGCACCGTGCTCACTCCCGT
CCACACTCACTGACTCTCTTGACTCCCTACCTCTAACCCTCATGCCCAGG
CAATGGGCACCGTGCTCACTCCCATCCACACTCACTGACTCTCTTAACTC
CCTACCTCTAACCCTCATGCCCAGGCAATGGGCACCGTGCTCACTCCCGT
CCACACTCACTGACTCTCTTGACTCCCTACCTCTAACCCTCATGCCCAGG
CAATGGGCACCGTGCTCACTCCCATCCACACTCACTGACTCTCTTGACTC
CCTACCTCTAACCCTCATGCCCAGGCAATGGGCACCGTGCTCACTCCCAT
CCACACTCACTGACTCTCTTAACTCCCTACCTCTAACCCTCATGCCCAGG
CAATGGGCACCGTGCTCACTCCCAACGGGACCAGCATGAACGAAGAGGGC
GTCCTGGTCGATAACGACATGACCGAGCAAACTCCTCGCACGGCCGTGCC
GGGCGACTCCTTTACTACCGCTGTCGACGGAGAAAGGAAACCAGTCGTTG
AGAAGGGAGGTGGTGGGGGTAAGTCCCCTCCCTCCCTCCCTCCCTCCCTC
CCTCCCTTTCTCCTCGAAATGCCGTTCCACCCTCCTTACATTTTTATCGC
CCTCCAT

protein sequence of jgi.p|Nanoce1779_2|221143

>mRNA_8824-protein ID=mRNA_8824-protein|Name=jgi.p|Nanoce1779_2|221143|organism=Nannochloropsis oceanica|type=polypeptide|length=166bp
MPRQWAPCSLPSTLTDSLDSLPLTLMPRQWAPCSLPSTLTDSLDSLPLTL
MPRQWAPCSLPSTLTDSLNSLPLTLMPRQWAPCSLPSTLTDSLDSLPLTL
MPRQWAPCSLPSTLTDSLDSLPLTLMPRQWAPCSLPSTLTDSLNSLPLTL
MPRQWAPCSLPTGPA*

mRNA from alignment at scaffold_28:260263..261163-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8824 ID=mRNA_8824|Name=jgi.p|Nanoce1779_2|221143|organism=Nannochloropsis oceanica|type=mRNA|length=901bp|location=Sequence derived from alignment at scaffold_28:260263..261163- (Nannochloropsis oceanica)
CCACACTCACTGACTCTCTTGACTCCCTACCTCTAACCCTCATGCCCAGG
CAATGGGCACCGTGCTCACTCCCGTCCACACTCACTGACTCTCTTGACTC
CCTACCTCTAACCCTCATGCCCAGGCAATGGGCACCGTGCTCACTCCCGT
CCACACTCACTGACTCTCTTGACTCCCTACCTCTAACCCTCATGCCCAGG
CAATGGGCACCGTGCTCACTCCCATCCACACTCACTGACTCTCTTAACTC
CCTACCTCTAACCCTCATGCCCAGGCAATGGGCACCGTGCTCACTCCCGT
CCACACTCACTGACTCTCTTGACTCCCTACCTCTAACCCTCATGCCCAGG
CAATGGGCACCGTGCTCACTCCCATCCACACTCACTGACTCTCTTGACTC
CCTACCTCTAACCCTCATGCCCAGGCAATGGGCACCGTGCTCACTCCCAT
CCACACTCACTGACTCTCTTAACTCCCTACCTCTAACCCTCATGCCCAGG
CAATGGGCACCGTGCTCACTCCCAACGGGACCAGCATGAACGAAGAGGGC
GTCCTGGTCGATAACGACATGAGTACGTCCTCCCTCCCTCCCTCCCTCCC
TCCCTCCCGCCCTTTCTCCCTCCCTCTCTCCCCCCCTCCTCCTCCCCCTC
CTCCTCCTCATCAACCCTCCCCATCACCCTCTTTCCTCCCTCCTTCCTCC
GTCCATCCCTCCACAGCCGAGCAAACTCCTCGCACGGCCGTGCCGGGCGA
CTCCTTTACTACCGCTGTCGACGGAGAAAGGAAACCAGTCGTTGAGAAGG
GAGGTGGTGGGGGTAAGTCCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCC
TTTCTCCTCGAAATGCCGTTCCACCCTCCTTACATTTTTATCGCCCTCCA
T

Coding sequence (CDS) from alignment at scaffold_28:260263..261163-

>mRNA_8824 ID=mRNA_8824|Name=jgi.p|Nanoce1779_2|221143|organism=Nannochloropsis oceanica|type=CDS|length=498bp|location=Sequence derived from alignment at scaffold_28:260263..261163- (Nannochloropsis oceanica)
ATGCCCAGGCAATGGGCACCGTGCTCACTCCCGTCCACACTCACTGACTC
TCTTGACTCCCTACCTCTAACCCTCATGCCCAGGCAATGGGCACCGTGCT
CACTCCCGTCCACACTCACTGACTCTCTTGACTCCCTACCTCTAACCCTC
ATGCCCAGGCAATGGGCACCGTGCTCACTCCCATCCACACTCACTGACTC
TCTTAACTCCCTACCTCTAACCCTCATGCCCAGGCAATGGGCACCGTGCT
CACTCCCGTCCACACTCACTGACTCTCTTGACTCCCTACCTCTAACCCTC
ATGCCCAGGCAATGGGCACCGTGCTCACTCCCATCCACACTCACTGACTC
TCTTGACTCCCTACCTCTAACCCTCATGCCCAGGCAATGGGCACCGTGCT
CACTCCCATCCACACTCACTGACTCTCTTAACTCCCTACCTCTAACCCTC
ATGCCCAGGCAATGGGCACCGTGCTCACTCCCAACGGGACCAGCATGA

Synonyms

Publications