jgi.p|Nanoce1779_2|145162, mRNA_882 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|145162
Unique NamemRNA_882
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length534
Alignment locationscaffold_2:654978..655613 -

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Properties
Property NameValue
TranscriptId145248
TrackFilteredModels2
ProteinId145162
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:654978..655613 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|145162gene_882Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|145162mRNA_882-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_882CDS_882Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_882 ID=mRNA_882|Name=jgi.p|Nanoce1779_2|145162|organism=Nannochloropsis oceanica|type=mRNA|length=534bp
CTTTCTAATTCTTCTACCCCTTCTACTCCTCTTTCGTTCAGCACTCTTTG
TCTTGCGCCTTAGCCAAGGAAATTTCTAAAATAAACCACTTCATGCTATA
TCAAGTTGTATGGTGCATCTCGACGATTGTAGTATTTTAGTGTCTTGCTT
CCTGTCTCTTGTAAATTTTGTGGATGGATGCAAGTCAATGGAGATGGTGC
TCAGTGCCGGTGACAGTAGTCTTTTTGACTCCCACCTTGACAGACATCCT
CCGACACTCATTCTCACGCACATACATGCACACGCATGCCATCGACGCTG
CTTCTGTCTGCTTTCTGTCACAACACACAAAAAAAAGTGCAACACTACTG
TTCCCCTCTTTTTTGACTCTTTGGAAGTCTTTTCTTTCTATCTCACACGT
TAACCTGTACTAACCGTATTTTTTCTCTTCGCCTCTTTTTTTTTGTTCGC
TTACTTTCCTCCGCAGTGCCCGGTTCTTCTCCTCCAGTTGTCAACTGTCA
CACTCTAAGCTCGGGCCGTTCTCCAAGGCAGCCA
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protein sequence of jgi.p|Nanoce1779_2|145162

>mRNA_882-protein ID=mRNA_882-protein|Name=jgi.p|Nanoce1779_2|145162|organism=Nannochloropsis oceanica|type=polypeptide|length=98bp
MVHLDDCSILVSCFLSLVNFVDGCKSMEMVLSAGDSSLFDSHLDRHPPTL
ILTHIHAHACHRRCFCLLSVTTHKKKCNTTVPLFFDSLEVFSFYLTR*
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mRNA from alignment at scaffold_2:654978..655613-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_882 ID=mRNA_882|Name=jgi.p|Nanoce1779_2|145162|organism=Nannochloropsis oceanica|type=mRNA|length=636bp|location=Sequence derived from alignment at scaffold_2:654978..655613- (Nannochloropsis oceanica)
CTTTCTAATTCTTCTACCCCTTCTACTCCTCTTTCGTTCAGCACTCTTTG
TCTTGCGCCTTAGCCAAGGAAATTTCTAAAATAAACCACTTCATGCTATA
TCAAGTTGTATGGTGCATCTCGACGATTGTAGTATTTTAGTGTCTTGCTT
CCTGTCTCTTGTAAATTTTGTGGATGGATGCAAGTCAATGGAGATGGTGC
TCAGTGCCGGTGACAGTAGTCTTTTTGACTCCCACCTTGACAGACATCCT
CCGACACTCATTCTCACGCACATACATGCACACGCATGCCATCGACGCTG
CTTCTGTCTGCTTTCTGTCACAACACACAAAAAAAAGTGCAACACTACTG
TTCCCCTCTTTTTTGACTCTTTGGAAGTCTTTTCTTTCTATCTCACACGT
TAACCTGTACTAACCGTATTTTTTCTCTTCGCCTCTTTTTTTTTGTTCGC
TTACATTCCCCTCCTCCTCCAATTCCTAGTTTTAACATCTATACTCCTTC
TCCTCTTTCTCCTCCTTCCCTCCTCCTTCACACCCCTCTCCTCTTCCCCG
TGTTACTTTCCTCCGCAGTGCCCGGTTCTTCTCCTCCAGTTGTCAACTGT
CACACTCTAAGCTCGGGCCGTTCTCCAAGGCAGCCA
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Coding sequence (CDS) from alignment at scaffold_2:654978..655613-

>mRNA_882 ID=mRNA_882|Name=jgi.p|Nanoce1779_2|145162|organism=Nannochloropsis oceanica|type=CDS|length=294bp|location=Sequence derived from alignment at scaffold_2:654978..655613- (Nannochloropsis oceanica)
ATGGTGCATCTCGACGATTGTAGTATTTTAGTGTCTTGCTTCCTGTCTCT
TGTAAATTTTGTGGATGGATGCAAGTCAATGGAGATGGTGCTCAGTGCCG
GTGACAGTAGTCTTTTTGACTCCCACCTTGACAGACATCCTCCGACACTC
ATTCTCACGCACATACATGCACACGCATGCCATCGACGCTGCTTCTGTCT
GCTTTCTGTCACAACACACAAAAAAAAGTGCAACACTACTGTTCCCCTCT
TTTTTGACTCTTTGGAAGTCTTTTCTTTCTATCTCACACGTTAA
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Synonyms
Publications