jgi.p|Nanoce1779_2|604127, mRNA_8815 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|604127
Unique NamemRNA_8815
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length797
Alignment locationscaffold_28:231609..232405 +

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Properties
Property NameValue
TranscriptId604213
TrackFilteredModels2
ProteinId604127
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_28supercontigscaffold_28:231609..232405 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|604127gene_8815Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|604127mRNA_8815-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8815CDS_8815Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8815 ID=mRNA_8815|Name=jgi.p|Nanoce1779_2|604127|organism=Nannochloropsis oceanica|type=mRNA|length=797bp
GTTGCATTTTTCCTGATTCCTTCTTTTGTGAGATCGACATCAGCCATGGC
CAGGCCTCAAATGCATTCAAATGGCGTATTCTTTAAACGCATTTCGATGG
GTACATTTGCGCGACTCGTCCGGCGATGGAGACCTTGGATGGTTGGGAGG
AGCGTCCTGCGATCAACCTCCCCACTTTAACCCCCCGAATACTTCTTATT
TTCATATTACAGTCAGGCAATCATTGTCCTTCTATGTCACTTGATCTACG
ACCTCATTTCGTCATATTTTTACGCGATAGATTCGTGTAGAATAATGGCC
AGAGGCCAGAACGCCTCTCGTGTCCATGCTCGGACTTTTTATTTTTCACC
TCATCGTCACATGCACGTGCGTCCCCAAGACAAACTGATATCGAACCCCT
AAAAAGGCGCCAGTACGTCGTGGAGACTTTGAGTGTACGTTTTTTTCCCT
ATCATGCATTTTTCTCTCTTGCTGTCTTTCTTTTTATCACTTTATATCTT
CATCTTCATCACTCGCTCTCACACTCACTGTGTTCATCTCTGCGTCCCTC
TTCTTCTTTTCCCAGGCCTTCCTCCCTTTTGCACAATCAGCTTACATACC
TATACAATTCCTATCTCCTACTTCCTTCTCTATTTCTCTCCGTCCTAGCC
AATCTTCATGCCATTTCTTCCCAGTACAAGGGCCCTCGACAGGTAGGACA
CAGGTACTGCTCGTTACCGCCCTCCCCCTCTTCCTCCCCTCGCCTTCGCC
GCTGCTCTTCTCGTCGTCCGCGTGGACCTCGCTCCAGGTAAAGCAGC
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protein sequence of jgi.p|Nanoce1779_2|604127

>mRNA_8815-protein ID=mRNA_8815-protein|Name=jgi.p|Nanoce1779_2|604127|organism=Nannochloropsis oceanica|type=polypeptide|length=65bp
MHFSLLLSFFLSLYIFIFITRSHTHCVHLCVPLLLFPGLPPFCTISLHTY
TIPISYFLLYFSPS*
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mRNA from alignment at scaffold_28:231609..232405+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8815 ID=mRNA_8815|Name=jgi.p|Nanoce1779_2|604127|organism=Nannochloropsis oceanica|type=mRNA|length=797bp|location=Sequence derived from alignment at scaffold_28:231609..232405+ (Nannochloropsis oceanica)
GTTGCATTTTTCCTGATTCCTTCTTTTGTGAGATCGACATCAGCCATGGC
CAGGCCTCAAATGCATTCAAATGGCGTATTCTTTAAACGCATTTCGATGG
GTACATTTGCGCGACTCGTCCGGCGATGGAGACCTTGGATGGTTGGGAGG
AGCGTCCTGCGATCAACCTCCCCACTTTAACCCCCCGAATACTTCTTATT
TTCATATTACAGTCAGGCAATCATTGTCCTTCTATGTCACTTGATCTACG
ACCTCATTTCGTCATATTTTTACGCGATAGATTCGTGTAGAATAATGGCC
AGAGGCCAGAACGCCTCTCGTGTCCATGCTCGGACTTTTTATTTTTCACC
TCATCGTCACATGCACGTGCGTCCCCAAGACAAACTGATATCGAACCCCT
AAAAAGGCGCCAGTACGTCGTGGAGACTTTGAGTGTACGTTTTTTTCCCT
ATCATGCATTTTTCTCTCTTGCTGTCTTTCTTTTTATCACTTTATATCTT
CATCTTCATCACTCGCTCTCACACTCACTGTGTTCATCTCTGCGTCCCTC
TTCTTCTTTTCCCAGGCCTTCCTCCCTTTTGCACAATCAGCTTACATACC
TATACAATTCCTATCTCCTACTTCCTTCTCTATTTCTCTCCGTCCTAGCC
AATCTTCATGCCATTTCTTCCCAGTACAAGGGCCCTCGACAGGTAGGACA
CAGGTACTGCTCGTTACCGCCCTCCCCCTCTTCCTCCCCTCGCCTTCGCC
GCTGCTCTTCTCGTCGTCCGCGTGGACCTCGCTCCAGGTAAAGCAGC
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Coding sequence (CDS) from alignment at scaffold_28:231609..232405+

>mRNA_8815 ID=mRNA_8815|Name=jgi.p|Nanoce1779_2|604127|organism=Nannochloropsis oceanica|type=CDS|length=195bp|location=Sequence derived from alignment at scaffold_28:231609..232405+ (Nannochloropsis oceanica)
ATGCATTTTTCTCTCTTGCTGTCTTTCTTTTTATCACTTTATATCTTCAT
CTTCATCACTCGCTCTCACACTCACTGTGTTCATCTCTGCGTCCCTCTTC
TTCTTTTCCCAGGCCTTCCTCCCTTTTGCACAATCAGCTTACATACCTAT
ACAATTCCTATCTCCTACTTCCTTCTCTATTTCTCTCCGTCCTAG
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Synonyms
Publications