jgi.p|Nanoce1779_2|604114, mRNA_8813 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|604114
Unique NamemRNA_8813
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1246
Alignment locationscaffold_28:226625..229163 +

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Properties
Property NameValue
TranscriptId604200
TrackFilteredModels2
ProteinId604114
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_28supercontigscaffold_28:226625..229163 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|604114gene_8813Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|604114mRNA_8813-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8813CDS_8813Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8813 ID=mRNA_8813|Name=jgi.p|Nanoce1779_2|604114|organism=Nannochloropsis oceanica|type=mRNA|length=1246bp
TTCCTTCCCGAGCCTGAAAGTGACCAAGGCCTTCGCCAAGAGTACCTGCT
ACATTAATCCCAACGCCGACGGACTCGCCTCTTCCTCCTCCTGGGGCTTC
CATGACTTCTGCCTGCTCTCGGAGTTACCTTCTTCCTTCACCATCGAGGC
CGAAATCACCGTCAAGGAGGTGGCGCGTGATGACGCCCTCGCCCTGCACG
TGCCCTCCCTCGAGGACATGCGCCTGCACTACCCGCGGGGCCAGTCGACC
TTGGGTTTCATCTACGCGGATGGGGAGGGAGGCAAATATTCCCTATGCCT
ATATCCCAATGGCGATAATCTCTCCAGGGAAGGGCAGCTCGGAGTCTTCG
TCAAGGTCCTGGCCTTGCCCGGTGGTGTGAATGCCGTCAAGATCGAAGGG
AGTCTGCGGATTCTCCATGCGGGCCAAGTGGTGGCCTCCAGGTCCTTCCC
CGTTTCCACCTTTCTGAACGCCTCGAGCACAGGCGCTGCCACCAGCAGTA
CGTGGGGCTTTCACGATTTCTGTGATGTGGGCGAGGTGCAGGATTCCTTT
ATCATCGAGGCCGATATCACTATCAAAGATCGAGCGAAAGAGCCGAGCCT
TCAGGTACCTTCCCCTCCGTCCCTCCTTCCCTCCCTCCCTTCCTTCCTCG
CTGTTGTCCACACACTCGGACTTTTCAACTTCCCTCTTGCTTTAAGCTTC
CTTTCTTTTCCCCTCCCTCCGTCCCTCTCTCCCCTTCCCCCTCCCTCAGG
AGATCCCAACGGATTATTCGCTCGAGCGATTGTTGGACTGCCTGAAGATT
GCACACGGCCGCGAGGTGGAAGCCGCCCTAAACTCTCGGCGGATGCTCAA
CGAAAGCCAGCTCCGCACCCTCACCCTCGACCAGCTCCTGGAGATGCAAG
AGAACATCACCAACATCATCAAGGAGAAACGCACCCAAGAGAACGAGTGC
AGTGTGTGTCAAGACCGACTCAAAAGCATGGCTTGTGTGCCCTGTGGCCA
CCGCTTCTGCTCCGAGTGCTCGTCCAAAATCTCTGCTTCTTGCCCCGAGT
GCCGGCAGCATGTCACTCAGAAAATTCGTCTCTTCTAGATGGAGAGCCCC
TCCCTCCCTCCCTCCCTCCCTCGATCCCTCCCTTCCTCCTTTTCCCCATA
CTTCCGTTCCAGGGATCGAGGAGGAAGGGAGGGAGGGAGGGAGGGAGAGC
GGGATTAAGTCGAGGGAAGATGTATGGTGTGTGTATGTAGGCGGAG
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protein sequence of jgi.p|Nanoce1779_2|604114

>mRNA_8813-protein ID=mRNA_8813-protein|Name=jgi.p|Nanoce1779_2|604114|organism=Nannochloropsis oceanica|type=polypeptide|length=82bp
MLNESQLRTLTLDQLLEMQENITNIIKEKRTQENECSVCQDRLKSMACVP
CGHRFCSECSSKISASCPECRQHVTQKIRLF*
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mRNA from alignment at scaffold_28:226625..229163+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8813 ID=mRNA_8813|Name=jgi.p|Nanoce1779_2|604114|organism=Nannochloropsis oceanica|type=mRNA|length=2539bp|location=Sequence derived from alignment at scaffold_28:226625..229163+ (Nannochloropsis oceanica)
TTCCTTCCCGAGCCTGAAAGTGACCAAGGCCTTCGCCAAGAGTACCTGCT
ACATTAATCCCAACGCCGACGGACTCGCCTCTTCCTCCTCCTGGGGCTTC
CATGACTTCTGCCTGGTACGACAAACACCTCCCTTCTTCTCTCCCTCCCT
CCCTTCCTCCCTCCCTCCTGTCCTCGGCTACCTCGACTACTTGCCGTACC
CCTAGCCCTGTTGCCCTGTAGGAAGTGTCATTCGAATTTTCACGCTAACT
TTCCCCCCCGTCCCGTCCCTCCTTGTGCAGCTCTCGGAGTTACCTTCTTC
CTTCACCATCGAGGCCGAAATCACCGTCAAGGAGGTGGCGCGTGATGACG
CCCTCGCCCTGCACGTGCCCTCCCTCGAGGACATGCGCCTGCACTACCCG
CGGTACGTCGTTTATCCCTCCCTCCCTCCCTCCCTCCTTCCTTCTCACCT
TCCCTCCCTCCCTCCTTTCAGGGGCCAGTCGACCTTGGGTTTCATCTACG
CGGATGGGGAGGGAGGCAAATATTCCCTATGCCTATATCCCAATGGCGAT
AATCTCTCCAGGGAAGGGCAGCTCGGAGTCTTCGTCAAGGTACGTCCCCT
CCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCGCCATGGGACACG
GCCTCAGTCACGACTGAGAGAAAGCTGTCCGTGCTTTCCACTCAACCCCC
GCCCTCCCGCCCTCCCTCCCTCCCTCCTTCAGGTCCTGGCCTTGCCCGGT
GGTGTGAATGCCGTCAAGATCGAAGGGAGTCTGCGGATTCTCCATGCGGG
CCAAGTGGTGGCCTCCAGGTAGGGCGGGAGGGCGGAAGGGCGGGAGGGAG
GGAGGGCGGGAGGGAGGGAGGGAGGGGTGTGCGATGCAAGACGTCAATTT
CAAGAAAAGAGATGATACACCATGTTCACTTATCCGTCCCTCCCTCCCTC
CCTCCCTCCCTCAGGTCCTTCCCCGTTTCCACCTTTCTGAACGCCTCGAG
CACAGGCGCTGCCACCAGCAGTACGTGGGGCTTTCACGATTTCTGTGATG
TGGGCGAGGTGCAGGTAGGGAGCGAAGGCGGGAGGGAGGGAGGGGGGGAG
AAAGGGAGGGAGGGAGGGAGGGAAGGGTAGTACAGCGATTTTTGCCCTGC
AAAAGAATCGACGCTTATCCATTTCCTTCTTCCCCCCCTCTCCTTCCTCC
TTTCCCTTTCTCCTTCCCTCCCTCCTTCCCTTTCTCCTTCCCTCCCTCCC
CCGCTAGGATTCCTTTATCATCGAGGCCGATATCACTATCAAAGATCGAG
CGAAAGAGCCGAGCCTTCAGGTACCTTCCCCTCCGTCCCTCCTTCCCTCC
CTCCCTTCCTTCCTCGCTGTTGTCCACACACTCGGACTTTTCAACTTCCC
TCTTGCTTTAAGCTTCCTTTCTTTTCCCCTCCCTCCGTCCCTCTCTCCCC
TTCCCCCTCCCTCAGGAGATCCCAACGGATTATTCGCTCGAGCGATTGTT
GGACTGCCTGAAGATTGCACACGGCCGCGAGGTAGGGGAAGGGAGGGAGG
GAGGGAGGGCATGGATGTAGTTAGGAAGTGGGTTGAATCCCCGATTTCCC
CGCAGCCCTTTCGCCTCGCGGCCAGCCTGCCCCGCATCTCCGCTCTTTAT
GATTCTATTGGTCGAAAATTCATATTCATCGTTATCTTAATCATCATATT
ATTGTTGTAATCCTCGACGTAATTTGTCCAGTAATTATTTTAAGTCGACC
TACCCGTCGTCATTCAAGGCATTTCCATGCTTGTCTTTTTCACACACCCC
TCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTTCCCAGGTGGAAG
CCGCCCTAAACTCTCGGCGGATGCTCAACGAAAGCCAGCTCCGCACCCTC
ACCCTCGACCAGCTCCTGGAGATGCAAGAGAACATCACCAACATCATCAA
GGTCCCTCCTCTATCCCTCCCTCCCTCCCTCCCTCCCTTCCCTCGCTTCC
GTCTCTCTACCCTATTTCCTGTCCAACCGTACAACATCAGGACCAACCGT
CCCTCCCTCCCCTTCATTCCTCCCTCCCCTCAGGAGAAACGCACCCAAGA
GAACGAGTGCAGTGTGTGTCAAGACCGACTCAAAAGCATGGCTTGTGTGC
CCTGTGGCCACCGCTTCTGCTCCGAGGTACGTCTTCTCCCTTCCCTCCCT
CCCTTCTTCCCTCCCTCCCGCTTTTCCTCCTCTCCTTTTTCGCCGCTTCG
CCCTCATCATTTAGCTATTGCATTCGATTCCTTCAACCCCTCCTCCCTCC
CTTTCTCAGTGCTCGTCCAAAATCTCTGCTTCTTGCCCCGAGTGCCGGCA
GCATGTCACTCAGAAAATTCGTCTCTTCTAGATGGAGAGCCCCTCCCTCC
CTCCCTCCCTCCCTCGATCCCTCCCTTCCTCCTTTTCCCCATACTTCCGT
TCCAGGGATCGAGGAGGAAGGGAGGGAGGGAGGGAGGGAGAGCGGGATTA
AGTCGAGGGAAGATGTATGGTGTGTGTATGTAGGCGGAG
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Coding sequence (CDS) from alignment at scaffold_28:226625..229163+

>mRNA_8813 ID=mRNA_8813|Name=jgi.p|Nanoce1779_2|604114|organism=Nannochloropsis oceanica|type=CDS|length=738bp|location=Sequence derived from alignment at scaffold_28:226625..229163+ (Nannochloropsis oceanica)
ATGCTCAACGAAAGCCAGCTCCGCACCCTCACCCTCGACCAGCTCCTGGA
GATGCAAGAGAACATCACCAACATCATCAAGGAGAAACGCACCCAAGAGA
ACGAGTGCAGTGTGTGTCAAGACCGACTCAAAAGCATGGCTTGTGTGCCC
TGTGGCCACCGCTTCTGCTCCGAGTGCTCGTCCAAAATCTCTGCTTCTTG
CCCCGAGTGCCGGCAGCATGTCACTCAGAAAATTCGTCTCTTCTAGATGC
TCAACGAAAGCCAGCTCCGCACCCTCACCCTCGACCAGCTCCTGGAGATG
CAAGAGAACATCACCAACATCATCAAGGAGAAACGCACCCAAGAGAACGA
GTGCAGTGTGTGTCAAGACCGACTCAAAAGCATGGCTTGTGTGCCCTGTG
GCCACCGCTTCTGCTCCGAGTGCTCGTCCAAAATCTCTGCTTCTTGCCCC
GAGTGCCGGCAGCATGTCACTCAGAAAATTCGTCTCTTCTAGATGCTCAA
CGAAAGCCAGCTCCGCACCCTCACCCTCGACCAGCTCCTGGAGATGCAAG
AGAACATCACCAACATCATCAAGGAGAAACGCACCCAAGAGAACGAGTGC
AGTGTGTGTCAAGACCGACTCAAAAGCATGGCTTGTGTGCCCTGTGGCCA
CCGCTTCTGCTCCGAGTGCTCGTCCAAAATCTCTGCTTCTTGCCCCGAGT
GCCGGCAGCATGTCACTCAGAAAATTCGTCTCTTCTAG
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Synonyms
Publications