|
|
Properties
| Property Name | Value |
|---|
| TranscriptId | 220977 |
| Track | FilteredModels2 |
| ProteinId | 220891 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_28 | supercontig | scaffold_28:225598..228036 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_8812 ID=mRNA_8812|Name=jgi.p|Nanoce1779_2|220891|organism=Nannochloropsis oceanica|type=mRNA|length=1255bp
CCTTGTCTTCTAACTCTGCCGGTCCACTACGCCATCATTCACCACCAACA
CCACCACCTGCTGCTGGACCCGACGTGCGACAAAGCAACGCCAGCAAGAC
GTAAAGAGGCCTCATAAGAGTGAAGAGTCGAGGAGCAGCAGCAAGGCACG
ACTGCAATCATGATAACCCTCCGTGTGGACCACTTGCCTGCCTTGATGGA
GGAACTGACTTCCAAAGGGCAGCACTGCTTCGGGAGCGTCTTGGCAGACG
AGGCCGGAAAGTGGGTGATTCAGCTGTACCCTCATGGCGACGCCCACGCC
AAACCGGGCTTCTGCTCCATCTTTATCAAGAACATGGTGCTGGCCAGGGG
GATAGCAGCCGTGAAAATCGAAGGCAATATACGCATTGTCGCTGACTGCT
CGGCGTCCTCCATCTCCCCCTCCACCTCTTCCTTCCCGAGCCTGAAAGTG
ACCAAGGCCTTCGCCAAGAGTACCTGCTACATTAATCCCAACGCCGACGG
ACTCGCCTCTTCCTCCTCCTGGGGCTTCCATGACTTCTGCCTGCTCTCGG
AGTTACCTTCTTCCTTCACCATCGAGGCCGAAATCACCGTCAAGGAGGTG
GCGCGTGATGACGCCCTCGCCCTGCACGTGCCCTCCCTCGAGGACATGCG
CCTGCACTACCCGCGGGGCCAGTCGACCTTGGGTTTCATCTACGCGGATG
GGGAGGGAGGCAAATATTCCCTATGCCTATATCCCAATGGCGATAATCTC
TCCAGGGAAGGGCAGCTCGGAGTCTTCGTCAAGTGCGGGCCAAGTGGTGG
CCTCCAGGTCCTTCCCCGTTTCCACCTTTCTGAACGCCTCGAGCACAGGC
GCTGCCACCAGCAGTACGTGGGGCTTTCACGATTTCTGTGATGTGGGCGA
GGTGCAGGTAGGGAGCGAAGGCGGGAGGGAGGGAGGGGGGGAGAAAGGGA
GGGAGGGAGGGAGGGAAGGGTAGTACAGCGATTTTTGCCCTGCAAAAGAA
TCGACGCTTATCCATTTCCTTCTTCCCCCCCTCTCCTTCCTCCTTTCCCT
TTCTCCTTCCCTCCCTCCTTCCCTTTCTCCTTCCCTCCCTCCCCCGCTAG
GATTCCTTTATCATCGAGGCCGATATCACTATCAAAGATCGAGCGAAAGA
GCCGAGCCTTCAGGTACCTTCCCCTCCGTCCCTCCTTCCCTCCCTCCCTT
CCTTCCTCGCTGTTGTCCACACACTCGGACTTTTCAACTTCCCTCTTGCT
TTAAG back to topprotein sequence of jgi.p|Nanoce1779_2|220891 >mRNA_8812-protein ID=mRNA_8812-protein|Name=jgi.p|Nanoce1779_2|220891|organism=Nannochloropsis oceanica|type=polypeptide|length=244bp
MITLRVDHLPALMEELTSKGQHCFGSVLADEAGKWVIQLYPHGDAHAKPG
FCSIFIKNMVLARGIAAVKIEGNIRIVADCSASSISPSTSSFPSLKVTKA
FAKSTCYINPNADGLASSSSWGFHDFCLLSELPSSFTIEAEITVKEVARD
DALALHVPSLEDMRLHYPRGQSTLGFIYADGEGGKYSLCLYPNGDNLSRE
GQLGVFVKCGPSGGLQVLPRFHLSERLEHRRCHQQYVGLSRFL* back to topmRNA from alignment at scaffold_28:225598..228036+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_8812 ID=mRNA_8812|Name=jgi.p|Nanoce1779_2|220891|organism=Nannochloropsis oceanica|type=mRNA|length=2439bp|location=Sequence derived from alignment at scaffold_28:225598..228036+ (Nannochloropsis oceanica)
CCTTGTCTTCTAACTCTGCCGGTCCACTACGCCATCATTCACCACCAACA
CCACCACCTGCTGCTGGACCCGACGTGCGACAAAGCAACGCCAGCAAGAC
GTAAAGAGGCCTCATAAGAGTGAAGAGTCGAGGAGCAGCAGCAAGGCACG
ACTGCAATCATGATAACCCTCCGTGTGGACCACTTGCCTGCCTTGATGGA
GGAACTGACTTCCAAAGGGCAGCACTGCTTCGGGAGCGTCTTGGCAGACG
AGGCCGGAAAGTGGGTGATTCAGGTGATGAATCAAGGGGAAGCAACGGGG
GGAAGGAGAGCTTTGCAAGGACATTGCATGACTATAAAGTGGACTCTTAT
GCCCATCCCTCTGATCCCCATCTATCCATTCCTCCTTTCCTCCCTCCCCC
AGCTGTACCCTCATGGCGACGCCCACGCCAAACCGGGCTTCTGCTCCATC
TTTATCAAGAACATGGTGCTGGCCAGGGGGATAGCAGCCGTGAAAATCGA
AGGTTAGTGAGAAAATGAGAGATAGGGAGGGATGGGGGGGTGAGTGAACG
CATTCGCAGCTCTTGGAGGTGATTCTATGTTTGTCCCTGCACTACTTTCT
CGTTCACCTTTTCAACTCGTCCTCCTCATGCATGTTTCCCACTCTCCCGC
TTTTCCCTTCTTCTTTTTCTTTACCGTGATTCACCAAACACAGGCAATAT
ACGCATTGTCGCTGACTGCTCGGCGTCCTCCATCTCCTCCTCGTATTCCT
TGCCCCCCTCCACCTCCTCCTCCTCCCCCTCCTCCCTGTACGCTCCCACC
CCTTCCTCCCTCCCCGCTATCTCCGCTCCCTTCCCCTGCCCTCCCGCCGG
TGCTTCTGGGGCGAACAGACAAAGCCTTCCCTCCCTACCATCCTCTCCTC
CTCCTCCTCTCTCACCCGCCTCCACTACCACCTCTGTCGCCGCCGCCTCC
TCCTCGACCATCCTCCCTCCCTCCCTCTCTCCTGCCCGTCCTCCCTCCCT
CCTTCCCTCCCCCTCCCCCTCCACCTCTTCCTTCCCGAGCCTGAAAGTGA
CCAAGGCCTTCGCCAAGAGTACCTGCTACATTAATCCCAACGCCGACGGA
CTCGCCTCTTCCTCCTCCTGGGGCTTCCATGACTTCTGCCTGGTACGACA
AACACCTCCCTTCTTCTCTCCCTCCCTCCCTTCCTCCCTCCCTCCTGTCC
TCGGCTACCTCGACTACTTGCCGTACCCCTAGCCCTGTTGCCCTGTAGGA
AGTGTCATTCGAATTTTCACGCTAACTTTCCCCCCCGTCCCGTCCCTCCT
TGTGCAGCTCTCGGAGTTACCTTCTTCCTTCACCATCGAGGCCGAAATCA
CCGTCAAGGAGGTGGCGCGTGATGACGCCCTCGCCCTGCACGTGCCCTCC
CTCGAGGACATGCGCCTGCACTACCCGCGGTACGTCGTTTATCCCTCCCT
CCCTCCCTCCCTCCTTCCTTCTCACCTTCCCTCCCTCCCTCCTTTCAGGG
GCCAGTCGACCTTGGGTTTCATCTACGCGGATGGGGAGGGAGGCAAATAT
TCCCTATGCCTATATCCCAATGGCGATAATCTCTCCAGGGAAGGGCAGCT
CGGAGTCTTCGTCAAGGTACGTCCCCTCCCTCCCTCCCTCCCTCCCTCCC
TCCCTCCCTCCCTCGCCATGGGACACGGCCTCAGTCACGACTGAGAGAAA
GCTGTCCGTGCTTTCCACTCAACCCCCGCCCTCCCGCCCTCCCTCCCTCC
CTCCTTCAGGTCCTGGCCTTGCCCGGTGGTGTGAATGCCGTCAAGATCGA
AGGGAGTCTGCGGATTCTCCATGCGGGCCAAGTGGTGGCCTCCAGGTAGG
GCGGGAGGGCGGAAGGGCGGGAGGGAGGGAGGGCGGGAGGGAGGGAGGGA
GGGGTGTGCGATGCAAGACGTCAATTTCAAGAAAAGAGATGATACACCAT
GTTCACTTATCCGTCCCTCCCTCCCTCCCTCCCTCCCTCAGGTCCTTCCC
CGTTTCCACCTTTCTGAACGCCTCGAGCACAGGCGCTGCCACCAGCAGTA
CGTGGGGCTTTCACGATTTCTGTGATGTGGGCGAGGTGCAGGTAGGGAGC
GAAGGCGGGAGGGAGGGAGGGGGGGAGAAAGGGAGGGAGGGAGGGAGGGA
AGGGTAGTACAGCGATTTTTGCCCTGCAAAAGAATCGACGCTTATCCATT
TCCTTCTTCCCCCCCTCTCCTTCCTCCTTTCCCTTTCTCCTTCCCTCCCT
CCTTCCCTTTCTCCTTCCCTCCCTCCCCCGCTAGGATTCCTTTATCATCG
AGGCCGATATCACTATCAAAGATCGAGCGAAAGAGCCGAGCCTTCAGGTA
CCTTCCCCTCCGTCCCTCCTTCCCTCCCTCCCTTCCTTCCTCGCTGTTGT
CCACACACTCGGACTTTTCAACTTCCCTCTTGCTTTAAG back to topCoding sequence (CDS) from alignment at scaffold_28:225598..228036+ >mRNA_8812 ID=mRNA_8812|Name=jgi.p|Nanoce1779_2|220891|organism=Nannochloropsis oceanica|type=CDS|length=5856bp|location=Sequence derived from alignment at scaffold_28:225598..228036+ (Nannochloropsis oceanica)
ATGATAACCCTCCGTGTGGACCACTTGCCTGCCTTGATGGAGGAACTGAC
TTCCAAAGGGCAGCACTGCTTCGGGAGCGTCTTGGCAGACGAGGCCGGAA
AGTGGGTGATTCAGCTGTACCCTCATGGCGACGCCCACGCCAAACCGGGC
TTCTGCTCCATCTTTATCAAGAACATGGTGCTGGCCAGGGGGATAGCAGC
CGTGAAAATCGAAGGCAATATACGCATTGTCGCTGACTGCTCGGCGTCCT
CCATCTCCCCCTCCACCTCTTCCTTCCCGAGCCTGAAAGTGACCAAGGCC
TTCGCCAAGAGTACCTGCTACATTAATCCCAACGCCGACGGACTCGCCTC
TTCCTCCTCCTGGGGCTTCCATGACTTCTGCCTGCTCTCGGAGTTACCTT
CTTCCTTCACCATCGAGGCCGAAATCACCGTCAAGGAGGTGGCGCGTGAT
GACGCCCTCGCCCTGCACGTGCCCTCCCTCGAGGACATGCGCCTGCACTA
CCCGCGGGGCCAGTCGACCTTGGGTTTCATCTACGCGGATGGGGAGGGAG
GCAAATATTCCCTATGCCTATATCCCAATGGCGATAATCTCTCCAGGGAA
GGGCAGCTCGGAGTCTTCGTCAAGTGCGGGCCAAGTGGTGGCCTCCAGGT
CCTTCCCCGTTTCCACCTTTCTGAACGCCTCGAGCACAGGCGCTGCCACC
AGCAGTACGTGGGGCTTTCACGATTTCTGTGAATGATAACCCTCCGTGTG
GACCACTTGCCTGCCTTGATGGAGGAACTGACTTCCAAAGGGCAGCACTG
CTTCGGGAGCGTCTTGGCAGACGAGGCCGGAAAGTGGGTGATTCAGCTGT
ACCCTCATGGCGACGCCCACGCCAAACCGGGCTTCTGCTCCATCTTTATC
AAGAACATGGTGCTGGCCAGGGGGATAGCAGCCGTGAAAATCGAAGGCAA
TATACGCATTGTCGCTGACTGCTCGGCGTCCTCCATCTCCCCCTCCACCT
CTTCCTTCCCGAGCCTGAAAGTGACCAAGGCCTTCGCCAAGAGTACCTGC
TACATTAATCCCAACGCCGACGGACTCGCCTCTTCCTCCTCCTGGGGCTT
CCATGACTTCTGCCTGCTCTCGGAGTTACCTTCTTCCTTCACCATCGAGG
CCGAAATCACCGTCAAGGAGGTGGCGCGTGATGACGCCCTCGCCCTGCAC
GTGCCCTCCCTCGAGGACATGCGCCTGCACTACCCGCGGGGCCAGTCGAC
CTTGGGTTTCATCTACGCGGATGGGGAGGGAGGCAAATATTCCCTATGCC
TATATCCCAATGGCGATAATCTCTCCAGGGAAGGGCAGCTCGGAGTCTTC
GTCAAGTGCGGGCCAAGTGGTGGCCTCCAGGTCCTTCCCCGTTTCCACCT
TTCTGAACGCCTCGAGCACAGGCGCTGCCACCAGCAGTACGTGGGGCTTT
CACGATTTCTGTGAATGATAACCCTCCGTGTGGACCACTTGCCTGCCTTG
ATGGAGGAACTGACTTCCAAAGGGCAGCACTGCTTCGGGAGCGTCTTGGC
AGACGAGGCCGGAAAGTGGGTGATTCAGCTGTACCCTCATGGCGACGCCC
ACGCCAAACCGGGCTTCTGCTCCATCTTTATCAAGAACATGGTGCTGGCC
AGGGGGATAGCAGCCGTGAAAATCGAAGGCAATATACGCATTGTCGCTGA
CTGCTCGGCGTCCTCCATCTCCCCCTCCACCTCTTCCTTCCCGAGCCTGA
AAGTGACCAAGGCCTTCGCCAAGAGTACCTGCTACATTAATCCCAACGCC
GACGGACTCGCCTCTTCCTCCTCCTGGGGCTTCCATGACTTCTGCCTGCT
CTCGGAGTTACCTTCTTCCTTCACCATCGAGGCCGAAATCACCGTCAAGG
AGGTGGCGCGTGATGACGCCCTCGCCCTGCACGTGCCCTCCCTCGAGGAC
ATGCGCCTGCACTACCCGCGGGGCCAGTCGACCTTGGGTTTCATCTACGC
GGATGGGGAGGGAGGCAAATATTCCCTATGCCTATATCCCAATGGCGATA
ATCTCTCCAGGGAAGGGCAGCTCGGAGTCTTCGTCAAGTGCGGGCCAAGT
GGTGGCCTCCAGGTCCTTCCCCGTTTCCACCTTTCTGAACGCCTCGAGCA
CAGGCGCTGCCACCAGCAGTACGTGGGGCTTTCACGATTTCTGTGAATGA
TAACCCTCCGTGTGGACCACTTGCCTGCCTTGATGGAGGAACTGACTTCC
AAAGGGCAGCACTGCTTCGGGAGCGTCTTGGCAGACGAGGCCGGAAAGTG
GGTGATTCAGCTGTACCCTCATGGCGACGCCCACGCCAAACCGGGCTTCT
GCTCCATCTTTATCAAGAACATGGTGCTGGCCAGGGGGATAGCAGCCGTG
AAAATCGAAGGCAATATACGCATTGTCGCTGACTGCTCGGCGTCCTCCAT
CTCCCCCTCCACCTCTTCCTTCCCGAGCCTGAAAGTGACCAAGGCCTTCG
CCAAGAGTACCTGCTACATTAATCCCAACGCCGACGGACTCGCCTCTTCC
TCCTCCTGGGGCTTCCATGACTTCTGCCTGCTCTCGGAGTTACCTTCTTC
CTTCACCATCGAGGCCGAAATCACCGTCAAGGAGGTGGCGCGTGATGACG
CCCTCGCCCTGCACGTGCCCTCCCTCGAGGACATGCGCCTGCACTACCCG
CGGGGCCAGTCGACCTTGGGTTTCATCTACGCGGATGGGGAGGGAGGCAA
ATATTCCCTATGCCTATATCCCAATGGCGATAATCTCTCCAGGGAAGGGC
AGCTCGGAGTCTTCGTCAAGTGCGGGCCAAGTGGTGGCCTCCAGGTCCTT
CCCCGTTTCCACCTTTCTGAACGCCTCGAGCACAGGCGCTGCCACCAGCA
GTACGTGGGGCTTTCACGATTTCTGTGAATGATAACCCTCCGTGTGGACC
ACTTGCCTGCCTTGATGGAGGAACTGACTTCCAAAGGGCAGCACTGCTTC
GGGAGCGTCTTGGCAGACGAGGCCGGAAAGTGGGTGATTCAGCTGTACCC
TCATGGCGACGCCCACGCCAAACCGGGCTTCTGCTCCATCTTTATCAAGA
ACATGGTGCTGGCCAGGGGGATAGCAGCCGTGAAAATCGAAGGCAATATA
CGCATTGTCGCTGACTGCTCGGCGTCCTCCATCTCCCCCTCCACCTCTTC
CTTCCCGAGCCTGAAAGTGACCAAGGCCTTCGCCAAGAGTACCTGCTACA
TTAATCCCAACGCCGACGGACTCGCCTCTTCCTCCTCCTGGGGCTTCCAT
GACTTCTGCCTGCTCTCGGAGTTACCTTCTTCCTTCACCATCGAGGCCGA
AATCACCGTCAAGGAGGTGGCGCGTGATGACGCCCTCGCCCTGCACGTGC
CCTCCCTCGAGGACATGCGCCTGCACTACCCGCGGGGCCAGTCGACCTTG
GGTTTCATCTACGCGGATGGGGAGGGAGGCAAATATTCCCTATGCCTATA
TCCCAATGGCGATAATCTCTCCAGGGAAGGGCAGCTCGGAGTCTTCGTCA
AGTGCGGGCCAAGTGGTGGCCTCCAGGTCCTTCCCCGTTTCCACCTTTCT
GAACGCCTCGAGCACAGGCGCTGCCACCAGCAGTACGTGGGGCTTTCACG
ATTTCTGTGAATGATAACCCTCCGTGTGGACCACTTGCCTGCCTTGATGG
AGGAACTGACTTCCAAAGGGCAGCACTGCTTCGGGAGCGTCTTGGCAGAC
GAGGCCGGAAAGTGGGTGATTCAGCTGTACCCTCATGGCGACGCCCACGC
CAAACCGGGCTTCTGCTCCATCTTTATCAAGAACATGGTGCTGGCCAGGG
GGATAGCAGCCGTGAAAATCGAAGGCAATATACGCATTGTCGCTGACTGC
TCGGCGTCCTCCATCTCCCCCTCCACCTCTTCCTTCCCGAGCCTGAAAGT
GACCAAGGCCTTCGCCAAGAGTACCTGCTACATTAATCCCAACGCCGACG
GACTCGCCTCTTCCTCCTCCTGGGGCTTCCATGACTTCTGCCTGCTCTCG
GAGTTACCTTCTTCCTTCACCATCGAGGCCGAAATCACCGTCAAGGAGGT
GGCGCGTGATGACGCCCTCGCCCTGCACGTGCCCTCCCTCGAGGACATGC
GCCTGCACTACCCGCGGGGCCAGTCGACCTTGGGTTTCATCTACGCGGAT
GGGGAGGGAGGCAAATATTCCCTATGCCTATATCCCAATGGCGATAATCT
CTCCAGGGAAGGGCAGCTCGGAGTCTTCGTCAAGTGCGGGCCAAGTGGTG
GCCTCCAGGTCCTTCCCCGTTTCCACCTTTCTGAACGCCTCGAGCACAGG
CGCTGCCACCAGCAGTACGTGGGGCTTTCACGATTTCTGTGAATGATAAC
CCTCCGTGTGGACCACTTGCCTGCCTTGATGGAGGAACTGACTTCCAAAG
GGCAGCACTGCTTCGGGAGCGTCTTGGCAGACGAGGCCGGAAAGTGGGTG
ATTCAGCTGTACCCTCATGGCGACGCCCACGCCAAACCGGGCTTCTGCTC
CATCTTTATCAAGAACATGGTGCTGGCCAGGGGGATAGCAGCCGTGAAAA
TCGAAGGCAATATACGCATTGTCGCTGACTGCTCGGCGTCCTCCATCTCC
CCCTCCACCTCTTCCTTCCCGAGCCTGAAAGTGACCAAGGCCTTCGCCAA
GAGTACCTGCTACATTAATCCCAACGCCGACGGACTCGCCTCTTCCTCCT
CCTGGGGCTTCCATGACTTCTGCCTGCTCTCGGAGTTACCTTCTTCCTTC
ACCATCGAGGCCGAAATCACCGTCAAGGAGGTGGCGCGTGATGACGCCCT
CGCCCTGCACGTGCCCTCCCTCGAGGACATGCGCCTGCACTACCCGCGGG
GCCAGTCGACCTTGGGTTTCATCTACGCGGATGGGGAGGGAGGCAAATAT
TCCCTATGCCTATATCCCAATGGCGATAATCTCTCCAGGGAAGGGCAGCT
CGGAGTCTTCGTCAAGTGCGGGCCAAGTGGTGGCCTCCAGGTCCTTCCCC
GTTTCCACCTTTCTGAACGCCTCGAGCACAGGCGCTGCCACCAGCAGTAC
GTGGGGCTTTCACGATTTCTGTGAATGATAACCCTCCGTGTGGACCACTT
GCCTGCCTTGATGGAGGAACTGACTTCCAAAGGGCAGCACTGCTTCGGGA
GCGTCTTGGCAGACGAGGCCGGAAAGTGGGTGATTCAGCTGTACCCTCAT
GGCGACGCCCACGCCAAACCGGGCTTCTGCTCCATCTTTATCAAGAACAT
GGTGCTGGCCAGGGGGATAGCAGCCGTGAAAATCGAAGGCAATATACGCA
TTGTCGCTGACTGCTCGGCGTCCTCCATCTCCCCCTCCACCTCTTCCTTC
CCGAGCCTGAAAGTGACCAAGGCCTTCGCCAAGAGTACCTGCTACATTAA
TCCCAACGCCGACGGACTCGCCTCTTCCTCCTCCTGGGGCTTCCATGACT
TCTGCCTGCTCTCGGAGTTACCTTCTTCCTTCACCATCGAGGCCGAAATC
ACCGTCAAGGAGGTGGCGCGTGATGACGCCCTCGCCCTGCACGTGCCCTC
CCTCGAGGACATGCGCCTGCACTACCCGCGGGGCCAGTCGACCTTGGGTT
TCATCTACGCGGATGGGGAGGGAGGCAAATATTCCCTATGCCTATATCCC
AATGGCGATAATCTCTCCAGGGAAGGGCAGCTCGGAGTCTTCGTCAAGTG
CGGGCCAAGTGGTGGCCTCCAGGTCCTTCCCCGTTTCCACCTTTCTGAAC
GCCTCGAGCACAGGCGCTGCCACCAGCAGTACGTGGGGCTTTCACGATTT
CTGTGA back to top
|