jgi.p|Nanoce1779_2|604099, mRNA_8809 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|604099
Unique NamemRNA_8809
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length910
Alignment locationscaffold_28:215611..216520 -

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Properties
Property NameValue
TranscriptId604185
TrackFilteredModels2
ProteinId604099
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_28supercontigscaffold_28:215611..216520 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|604099gene_8809Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|604099mRNA_8809-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8809CDS_8809Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8809 ID=mRNA_8809|Name=jgi.p|Nanoce1779_2|604099|organism=Nannochloropsis oceanica|type=mRNA|length=910bp
TCTTGAATAATGGAACTAATTTATTAACAGAAAAACATGCACATGAAAAA
AGCCGACGGCTGTGTGGCCGTTTCTATATCTTCCCCCCTTTAACCACCTC
CCTTAAACCACTGCCGTCCTCTCCTATTTCACGCACCCCAACTGCTTGTT
GTTGCACATAGCCTAATTCACCCACACCCACCCACACACCCATACATACA
CACACTGAGACCTCCAACACACTCTTCACTCGCCAACTCACTCCTTTATT
CGCCCATTCGCTGTCCTTCGCTCCAAACAAGCATGCATATACACATCCTC
CCATCTTCGTTCCCATTCCTTCCCATCGTCCTCCTCCCCTCTCTCTTCCT
TCTTAGATCATATCTCTCGCTCCCCCCGCAGCAATCGCCCTTGCCCTTTC
CCTCCCTCTGCACCATTTACCATCTTCTCCGGCCTCGTCACGCTATCCCC
TCCCTCCCTCCTTCGTCGCTCATCCACCCCCCCTTGCTCTGCCGTCACCG
GCGGAGCCACTCTGGGGCCCACCATGGCCCCGGCGTTCACTCCCTCCCTT
CCTCCTCCTCCTCCTCCATTGTTTAACGGATTAGGCGGATGGACCAGAGG
GAGGGGTAAGGGAGTTGTCATGGTCGATACTGGAGTTCCCCCCTGGGGGG
CTTTCGGAGCGCCTTGTGGAACGTCAGGGCGAACGTTGGAGGGAGGGAGG
GGGAGGGAGGACTCGCTCTCGGGCTCCTGAGGGCGGGCCTTGGGGTCTTG
GACACCGGGAGAGGGAGGAGAGGGAGGAAGAGAGGTACTGCTGCTGCTGT
TGTTGCTGCTGTTGTTGTTGCTGCTGCTGTTGCTGCTGTTGTTGCTGCTG
CTGCTGCTGTTGTTGTTGCTGTTGTTGCTGCCGCTTTGGGGTGCGGAGGT
AGTGATGGGG
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protein sequence of jgi.p|Nanoce1779_2|604099

>mRNA_8809-protein ID=mRNA_8809-protein|Name=jgi.p|Nanoce1779_2|604099|organism=Nannochloropsis oceanica|type=polypeptide|length=98bp
MHIHILPSSFPFLPIVLLPSLFLLRSYLSLPPQQSPLPFPSLCTIYHLLR
PRHAIPSLPPSSLIHPPLLCRHRRSHSGAHHGPGVHSLPSSSSSSIV*
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mRNA from alignment at scaffold_28:215611..216520-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8809 ID=mRNA_8809|Name=jgi.p|Nanoce1779_2|604099|organism=Nannochloropsis oceanica|type=mRNA|length=910bp|location=Sequence derived from alignment at scaffold_28:215611..216520- (Nannochloropsis oceanica)
TCTTGAATAATGGAACTAATTTATTAACAGAAAAACATGCACATGAAAAA
AGCCGACGGCTGTGTGGCCGTTTCTATATCTTCCCCCCTTTAACCACCTC
CCTTAAACCACTGCCGTCCTCTCCTATTTCACGCACCCCAACTGCTTGTT
GTTGCACATAGCCTAATTCACCCACACCCACCCACACACCCATACATACA
CACACTGAGACCTCCAACACACTCTTCACTCGCCAACTCACTCCTTTATT
CGCCCATTCGCTGTCCTTCGCTCCAAACAAGCATGCATATACACATCCTC
CCATCTTCGTTCCCATTCCTTCCCATCGTCCTCCTCCCCTCTCTCTTCCT
TCTTAGATCATATCTCTCGCTCCCCCCGCAGCAATCGCCCTTGCCCTTTC
CCTCCCTCTGCACCATTTACCATCTTCTCCGGCCTCGTCACGCTATCCCC
TCCCTCCCTCCTTCGTCGCTCATCCACCCCCCCTTGCTCTGCCGTCACCG
GCGGAGCCACTCTGGGGCCCACCATGGCCCCGGCGTTCACTCCCTCCCTT
CCTCCTCCTCCTCCTCCATTGTTTAACGGATTAGGCGGATGGACCAGAGG
GAGGGGTAAGGGAGTTGTCATGGTCGATACTGGAGTTCCCCCCTGGGGGG
CTTTCGGAGCGCCTTGTGGAACGTCAGGGCGAACGTTGGAGGGAGGGAGG
GGGAGGGAGGACTCGCTCTCGGGCTCCTGAGGGCGGGCCTTGGGGTCTTG
GACACCGGGAGAGGGAGGAGAGGGAGGAAGAGAGGTACTGCTGCTGCTGT
TGTTGCTGCTGTTGTTGTTGCTGCTGCTGTTGCTGCTGTTGTTGCTGCTG
CTGCTGCTGTTGTTGTTGCTGTTGTTGCTGCCGCTTTGGGGTGCGGAGGT
AGTGATGGGG
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Coding sequence (CDS) from alignment at scaffold_28:215611..216520-

>mRNA_8809 ID=mRNA_8809|Name=jgi.p|Nanoce1779_2|604099|organism=Nannochloropsis oceanica|type=CDS|length=294bp|location=Sequence derived from alignment at scaffold_28:215611..216520- (Nannochloropsis oceanica)
ATGCATATACACATCCTCCCATCTTCGTTCCCATTCCTTCCCATCGTCCT
CCTCCCCTCTCTCTTCCTTCTTAGATCATATCTCTCGCTCCCCCCGCAGC
AATCGCCCTTGCCCTTTCCCTCCCTCTGCACCATTTACCATCTTCTCCGG
CCTCGTCACGCTATCCCCTCCCTCCCTCCTTCGTCGCTCATCCACCCCCC
CTTGCTCTGCCGTCACCGGCGGAGCCACTCTGGGGCCCACCATGGCCCCG
GCGTTCACTCCCTCCCTTCCTCCTCCTCCTCCTCCATTGTTTAA
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Synonyms
Publications