jgi.p|Nanoce1779_2|220491, mRNA_8806 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|220491
Unique NamemRNA_8806
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length779
Alignment locationscaffold_28:202459..203750 -

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Properties
Property NameValue
TranscriptId220577
TrackFilteredModels2
ProteinId220491
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_28supercontigscaffold_28:202459..203750 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|220491gene_8806Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|220491mRNA_8806-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8806CDS_8806Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8806 ID=mRNA_8806|Name=jgi.p|Nanoce1779_2|220491|organism=Nannochloropsis oceanica|type=mRNA|length=779bp
ATGTGTCTGAAACTGCGGTAATCTTATCCTATGATCTTTTACCTCCTCCT
TTCCTACGGAATCCTGTTCATAAGCTGCCTTTCCTCACTGCTCTCCCCCC
CCTCCCTCTCTCCCTCCATACCTCCTCTCTTCCCTCCCCCCTCAAGCCTC
TATCAGTGAAAACGTCCAAGCCAACGCTGCCGAGCGCTTGCAAGAGGCTA
AAATGCGGGGAGAGATAAATGTGCTAGGCGGGCCGTTGGAGCTCTGCGGC
ACTGATCCCATGACGGGTTTCACTCGGGAAGGCTGTTGTACCACCGGGCC
GATGGACCTGGGCTCGCACACGGTCTGTGCCGTGGTGACGGAGGATTTCC
TCCGGTATTCGAAGTCGCGTGGTAACGATCTAATGACGCCACGGCCCGAT
TTTTCGTTTCCAGGACTCAAGAGTGGAGACAAGTGGTGCCTGTGTGCCTC
GCGGTGGGCCGAGGCCTACGACGAGGGGGTGGCGTGCTCGGTCCTTCTCA
AATCGACGCATATCAAGGCCCTGGATGTCTGCGATTTGTCGGCATTAATC
GAACATGCCTTGGATCCGCCCGCGTCGCACACTAAGGACGCAGCGGGAGG
AGGGAAGGAGGGGGGAGGAGGAGGAGGAGGGGGAGGGAAAGAGGAGGGAG
GGAAGGAACTCCCGCCGCGGAAGCAGGAGGAGTTGTAAACGCCAAAGGTG
GTAAGGGTTTGGAGTCAAGAATGGAAGGATGTGATTGAGAAAGAAGCAAG
CAGGCATATCAACTCCCGTTGGCACAGTT
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protein sequence of jgi.p|Nanoce1779_2|220491

>mRNA_8806-protein ID=mRNA_8806-protein|Name=jgi.p|Nanoce1779_2|220491|organism=Nannochloropsis oceanica|type=polypeptide|length=162bp
MRGEINVLGGPLELCGTDPMTGFTREGCCTTGPMDLGSHTVCAVVTEDFL
RYSKSRGNDLMTPRPDFSFPGLKSGDKWCLCASRWAEAYDEGVACSVLLK
STHIKALDVCDLSALIEHALDPPASHTKDAAGGGKEGGGGGGGGGKEEGG
KELPPRKQEEL*
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mRNA from alignment at scaffold_28:202459..203750-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8806 ID=mRNA_8806|Name=jgi.p|Nanoce1779_2|220491|organism=Nannochloropsis oceanica|type=mRNA|length=1292bp|location=Sequence derived from alignment at scaffold_28:202459..203750- (Nannochloropsis oceanica)
ATGTGTCTGAAACTGCGGTAATCTTATCCTATGATCTTTTACCTCCTCCT
TTCCTACGGAATCCTGTTCATAAGCTGCCTTTCCTCACTGCTCTCCCCCC
CCTCCCTCTCTCCCTCCATACCTCCTCTCTTCCCTCCCCCCTCAAGCCTC
TATCAGTGAAAACGTCCAAGCCAACGCTGCCGAGCGCTTGCAAGAGGCTA
AAATGCGGGGAGAGATAAATGTGCTAGGCGGGCCGTTGGAGGTGAGGATT
TCCTTGTGTGCACTATGACTACTTTCCAATACGAGGAAACTCAGAATGGC
TTCCCTGCCTTCCCTTCCCCTCTTTAATCTGTAGCTCTGCGGCACTGATC
CCATGACGGGTTTCACTCGGGAAGGCTGTTGTACCACCGGGCCGATGGAC
CTGGGCTCGCACACGGTGAGGGCGGGGGGGTGGAAAGGGGGTGCGGAGGG
GAGTGAGAGGATTCCCTGGTTTAGTCAATGCCCCTCGAGACAGCAGGTGG
AGGGCTAGGCACCGTGGGAGGGCCATGCCGCAATGAATGCTCCGTGACCT
TGATATGTGTATCGCACATTATGAACTCGATATGTCGATCCCACACTGCC
ATTCACCGCCCCTTCCGTCCCTCCGTCCCTCCGTCCCTCCGTCTAGGTCT
GTGCCGTGGTGACGGAGGATTTCCTCCGGTATTCGAAGTCGCGTGGTAAC
GATCTAATGACGCCACGGCCCGATTTTTCGTTTCCAGGACTCAAGGTAGG
GAGGGACGGGAGGGAGGGAAGGAAGGAGGGAAGGAGGGAGGAAGGGGGGG
GGGGGGGAGGCAGGGTGGATTCATCGAGCTAGCGTTGGCTCTATCTCATC
GTCCCTCACATTCCTCCCTTCCCAACCCCTCCCATTCGACAAATGTTGTC
CTTTCCTTTCCCTCCCTTCCTTTCCATCCCTCAGAGTGGAGACAAGTGGT
GCCTGTGTGCCTCGCGGTGGGCCGAGGCCTACGACGAGGGGGTGGCGTGC
TCGGTCCTTCTCAAATCGACGCATATCAAGGCCCTGGATGTCTGCGATTT
GTCGGCATTAATCGAACATGCCTTGGATCCGCCCGCGTCGCACACTAAGG
ACGCAGCGGGAGGAGGGAAGGAGGGGGGAGGAGGAGGAGGAGGGGGAGGG
AAAGAGGAGGGAGGGAAGGAACTCCCGCCGCGGAAGCAGGAGGAGTTGTA
AACGCCAAAGGTGGTAAGGGTTTGGAGTCAAGAATGGAAGGATGTGATTG
AGAAAGAAGCAAGCAGGCATATCAACTCCCGTTGGCACAGTT
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Coding sequence (CDS) from alignment at scaffold_28:202459..203750-

>mRNA_8806 ID=mRNA_8806|Name=jgi.p|Nanoce1779_2|220491|organism=Nannochloropsis oceanica|type=CDS|length=1944bp|location=Sequence derived from alignment at scaffold_28:202459..203750- (Nannochloropsis oceanica)
AGTGGAGACAAGTGGTGCCTGTGTGCCTCGCGGTGGGCCGAGGCCTACGA
CGAGGGGGTGGCGTGCTCGGTCCTTCTCAAATCGACGCATATCAAGGCCC
TGGATGTCTGCGATTTGTCGGCATTAATCGAACATGCCTTGGATCCGCCC
GCGTCGCACACTAAGGACGCAGCGGGAGGAGGGAAGGAGGGGGGAGGAGG
AGGAGGAGGGGGAGGGAAAGAGGAGGGAGGGAAGGAACTCCCGCCGCGGA
AGCAGGAGGAGTTGTAAGTCTGTGCCGTGGTGACGGAGGATTTCCTCCGG
TATTCGAAGTCGCGTGGTAACGATCTAATGACGCCACGGCCCGATTTTTC
GTTTCCAGGACTCAAGCTCTGCGGCACTGATCCCATGACGGGTTTCACTC
GGGAAGGCTGTTGTACCACCGGGCCGATGGACCTGGGCTCGCACACGATG
CGGGGAGAGATAAATGTGCTAGGCGGGCCGTTGGAGAGTGGAGACAAGTG
GTGCCTGTGTGCCTCGCGGTGGGCCGAGGCCTACGACGAGGGGGTGGCGT
GCTCGGTCCTTCTCAAATCGACGCATATCAAGGCCCTGGATGTCTGCGAT
TTGTCGGCATTAATCGAACATGCCTTGGATCCGCCCGCGTCGCACACTAA
GGACGCAGCGGGAGGAGGGAAGGAGGGGGGAGGAGGAGGAGGAGGGGGAG
GGAAAGAGGAGGGAGGGAAGGAACTCCCGCCGCGGAAGCAGGAGGAGTTG
TAAGTCTGTGCCGTGGTGACGGAGGATTTCCTCCGGTATTCGAAGTCGCG
TGGTAACGATCTAATGACGCCACGGCCCGATTTTTCGTTTCCAGGACTCA
AGCTCTGCGGCACTGATCCCATGACGGGTTTCACTCGGGAAGGCTGTTGT
ACCACCGGGCCGATGGACCTGGGCTCGCACACGATGCGGGGAGAGATAAA
TGTGCTAGGCGGGCCGTTGGAGAGTGGAGACAAGTGGTGCCTGTGTGCCT
CGCGGTGGGCCGAGGCCTACGACGAGGGGGTGGCGTGCTCGGTCCTTCTC
AAATCGACGCATATCAAGGCCCTGGATGTCTGCGATTTGTCGGCATTAAT
CGAACATGCCTTGGATCCGCCCGCGTCGCACACTAAGGACGCAGCGGGAG
GAGGGAAGGAGGGGGGAGGAGGAGGAGGAGGGGGAGGGAAAGAGGAGGGA
GGGAAGGAACTCCCGCCGCGGAAGCAGGAGGAGTTGTAAGTCTGTGCCGT
GGTGACGGAGGATTTCCTCCGGTATTCGAAGTCGCGTGGTAACGATCTAA
TGACGCCACGGCCCGATTTTTCGTTTCCAGGACTCAAGCTCTGCGGCACT
GATCCCATGACGGGTTTCACTCGGGAAGGCTGTTGTACCACCGGGCCGAT
GGACCTGGGCTCGCACACGATGCGGGGAGAGATAAATGTGCTAGGCGGGC
CGTTGGAGAGTGGAGACAAGTGGTGCCTGTGTGCCTCGCGGTGGGCCGAG
GCCTACGACGAGGGGGTGGCGTGCTCGGTCCTTCTCAAATCGACGCATAT
CAAGGCCCTGGATGTCTGCGATTTGTCGGCATTAATCGAACATGCCTTGG
ATCCGCCCGCGTCGCACACTAAGGACGCAGCGGGAGGAGGGAAGGAGGGG
GGAGGAGGAGGAGGAGGGGGAGGGAAAGAGGAGGGAGGGAAGGAACTCCC
GCCGCGGAAGCAGGAGGAGTTGTAAGTCTGTGCCGTGGTGACGGAGGATT
TCCTCCGGTATTCGAAGTCGCGTGGTAACGATCTAATGACGCCACGGCCC
GATTTTTCGTTTCCAGGACTCAAGCTCTGCGGCACTGATCCCATGACGGG
TTTCACTCGGGAAGGCTGTTGTACCACCGGGCCGATGGACCTGGGCTCGC
ACACGATGCGGGGAGAGATAAATGTGCTAGGCGGGCCGTTGGAG
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Synonyms
Publications