jgi.p|Nanoce1779_2|604079, mRNA_8803 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|604079
Unique Name	mRNA_8803
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2555
Alignment location	scaffold_28:197802..201613 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	604165
Track	FilteredModels2
ProteinId	604079

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_28	supercontig	scaffold_28:197802..201613 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|604079	gene_8803	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|604079	mRNA_8803-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8803	CDS_8803	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_28:197802..201613+
coding sequence from alignment at scaffold_28:197802..201613+

mRNA sequence

>mRNA_8803 ID=mRNA_8803|Name=jgi.p|Nanoce1779_2|604079|organism=Nannochloropsis oceanica|type=mRNA|length=2555bp
TGAAATATTTTGCAGGAGGAGCCTTGGAAAAAAGGTGACACCCGCAAATA
AGTTATGAGGCATTGTTGATTTTGTTTTGTCGAATGTACTTCGTGTTCAG
GGCCTTGCACGTCTTGCTTGTGGTCGTGCTTTGTTTTGTTTTGTCCAACC
CTCAATGTTCTGCCGACAAGACATTCCTTTTCATTCCCGCATCAAGGCGA
AGAAGAGGTGCTCCCCCTTCCTCCTGCTCCCCCCTCACAGTCGCGAGGCA
GGTCAGAGTGGAAAGGTGCAAATATGTTTGTAATGGGCTTGTGTCCCTCC
AAACCTCCACCACACCACCTTTTCCACCCCACACGACTTGCACACGACAC
AGCACGCGGCGGTGGAACGACTTTGGGAAGAACAACTTGGTTGCCGCATG
GCTGTCTTTATCCTGCGCTACAGCACCCACCGGTGTCTCATGTCCACCAC
CATCTCCCACGTCACGACAACCCCAAGCTACACCAGCCCTCCTCACACAC
AGGCGCGGGCCTCTAGCCATGCCAAGCGCCAAAGCCTGACACACTCATCC
TCCCGTCAGCCTTTGGCCCTTTGGCACAGCGTCACCTTCATGATGTCATC
GGAGGCCTCAAAGGCATTGAGTTTCTCGACCCTGTTGCGCTTCAGAGCTT
TTTGCCGCAACAACAACACCACAAGCACTACCGAGAGCCGCACGGCAAAA
ACCACAACAACTACAACAACAAGAAGAAGAAGACACTAGGCGCAGCCTGC
AGCCGTTGCCCTCTTCTAACTACGACAACACAAGCAAGCAGCAGTACCAG
CGCCATCCAATGACCAGCCGCGCCTCTGCCGCCACCACAACACCTGTCAG
CAATCCCAAAGGCGCATTCGCCTGCTTTCCCTTCAAGTTTCTTTTCGGCG
GGGACGCCACGGAAGGCAACGGCACCGACGGCAAACTGAACAAAAAAGAC
AAGAACATGCAGAAGAAAGGCACCTCCGCCACCACCTCCGACTCGGCCAC
TGCCTCCTATGAAGGCTCGAGCATCATGTCCATCGATGAACGCAGGGAAG
GAAGCATGCAGGCCGGTGTCATGGGTGGCCCCAGCAAGGCGGGAACGTTT
GGAGCATCGGGCGCCCCGGCAGGTGTCCGTGTTGTGGCGGGGTACGAGAT
CCAGGACACGCTGGGGAAAGGCATGAGTGGGAAGGTGAAGAGGGGCTATA
ACCACAGCAGCGGCGAGTACGTGGCTCTCAAGGTTATCGACAAACAGTCC
ACCCCCCGACGGGTGCTCCAGATGCTCGGCACGGAGATCGCTGCCATGAA
GGCGTTGGACAACCACCCTTACATCCTGTCCCTGCTCCACTACGACATGT
CGTGCTCCTACCCGAGGAAGAAGGGAGGGGCCAGGGACGTGGTCCTCCTG
GCCCTAGACCTCGCCGAGGGGGGGGAGTTGTTTGATTTTATGATGTACAC
AGGCGCATTTTCGGAGAGCATCGCCAAGGCCATATTCAAGCAGCTCACGG
ACGCCCTCTCCTTCTGCCACGAGCGTGGGATCTACCATCGGGACATCAAG
CCGGAGAACCTCCTCCTCGACTCCAACTTCCAGCTCAAGGTCGCTGATTT
CGGCCTGGCCGCCATGCGTGCCTCCCCGGAAGAGTTGCTCAAGACGGAGT
GTGGAACCCGTTCCTACATGGCTCCCGAGGTGCTTGCCCGTCAACAGTAC
GACGGTGCCAAGGCCGACTGCTGGTCCTCGGGTGTAGTGCTCTTCATCAT
GCTCAGCGGCAACCCACCCTTCCAGATGGCCCGCCCTGGTGACTGGTGGT
TCAACCAATTTCAGGAGGGTCGTCCGGATCGGTTCTGGAAGTCGCACAAG
CGCTACACTCCCGACTTCCCTGAACCCGCCCAAAACCTCCTCACCCGCAT
CTTCAACCCCAACCCCGCCAAGCGCCCTTCGGTCACGGACCTGAACAAGG
ACGCATGGCTGTCCTCGAGCACCCTACACCCGGCTGAGGTCAGCCAGGAG
CTGGCCACTCGCAAAGAGAAGATCAAGACCGAGAAGGAGTTGGAGAAGGA
GCGCGCACGTCGCAAGAAGGCTGCCGGGCAGTACGGCAAGGGCGGGAGCA
AGGACATTGATCCGGACAGGGTCAAGCACCGCGACATCGCCGCCGACGGC
GAGTCGCCCTCCCTCCCCGAATCCCCTGCGCCGTCCCCTCCTGCTGGCGT
GGCCGACCTGCTTACCAACCTCTACTCGGCCGAAGAGCCCTCGGTTGTCC
TTCGACGGGCCAAGGAAGCACTGGAAGTGATGGGCGGGAAACTGACCGTT
AAGGGCCCATATCACCTCCAAGCCCTCCTGCCAGTGGACGGTCCGACGCT
GGTGCAGGTGGACGTGAAGGTTTACTCGGAGGGAGGGAAGGACGGCGGGG
ACGCTGAGGGTCGTATCCAGGTGTTGAGCGTGACGAGAAAGCAGGGAGAC
CCGTTGGGATTCCAGAAGGTCTTCCTAGCGTTTAGGAATCAGACGACGGA
TTTGCACGGGGAGGGCGGGATGGACAGCGGGGAAAGCACGGAGGAGGGGG
TGGGG

protein sequence of jgi.p|Nanoce1779_2|604079

>mRNA_8803-protein ID=mRNA_8803-protein|Name=jgi.p|Nanoce1779_2|604079|organism=Nannochloropsis oceanica|type=polypeptide|length=152bp
MYFVFRALHVLLVVVLCFVLSNPQCSADKTFLFIPASRRRRGAPPSSCSP
LTVARQVRVERCKYVCNGLVSLQTSTTPPFPPHTTCTRHSTRRWNDFGKN
NLVAAWLSLSCATAPTGVSCPPPSPTSRQPQATPALLTHRRGPLAMPSAK
A*

mRNA from alignment at scaffold_28:197802..201613+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8803 ID=mRNA_8803|Name=jgi.p|Nanoce1779_2|604079|organism=Nannochloropsis oceanica|type=mRNA|length=3812bp|location=Sequence derived from alignment at scaffold_28:197802..201613+ (Nannochloropsis oceanica)
TGAAATATTTTGCAGGAGGAGCCTTGGAAAAAAGGTGACACCCGCAAATA
AGTTATGAGGCATTGTTGATTTTGTTTTGTCGAATGTACTTCGTGTTCAG
GGCCTTGCACGTCTTGCTTGTGGTCGTGCTTTGTTTTGTTTTGTCCAACC
CTCAATGTTCTGCCGACAAGACATTCCTTTTCATTCCCGCATCAAGGCGA
AGAAGAGGTGCTCCCCCTTCCTCCTGCTCCCCCCTCACAGTCGCGAGGCA
GGTCAGAGTGGAAAGGTGCAAATATGTTTGTAATGGGCTTGTGTCCCTCC
AAACCTCCACCACACCACCTTTTCCACCCCACACGACTTGCACACGACAC
AGCACGCGGCGGTGGAACGACTTTGGGAAGAACAACTTGGTTGCCGCATG
GCTGTCTTTATCCTGCGCTACAGCACCCACCGGTGTCTCATGTCCACCAC
CATCTCCCACGTCACGACAACCCCAAGCTACACCAGCCCTCCTCACACAC
AGGCGCGGGCCTCTAGCCATGCCAAGCGCCAAAGCCTGACACACTCATCC
TCCCGTCAGCCTTTGGCCCTTTGGCACAGCGTCACCTTCATGATGTCATC
GGAGGCCTCAAAGGCATTGAGTTTCTCGACCCTGTTGCGCTTCAGAGCTT
TTTGCCGGCATGTGGAGTAGAATACAAGGGTTGGTCGTGGTCGGTTCCAC
CCACCTCGTCTTGCACATGGCGGCGTGACGGCTCTAGCAAACAAGCAGAC
TCGACGCTCATTCTTCATCCTCCCACCACCCACATACCACACAGCAACAA
CAACACCACAAGCACTACCGAGAGCCGCACGGCAAAAACCACAACAACTA
CAACAACAAGAAGAAGAAGACACTAGGCGCAGCCTGCAGCCGTTGCCCTC
TTCTAACTACGACAACACAAGCAAGCAGCAGTACCAGCGCCATCCAATGA
CCAGCCGCGCCTCTGCCGCCACCACAACACCTGTCAGCAATCCCAAAGGC
GCATTCGCCTGCTTTCCCTTCAAGTTTCTTTTCGGCGGGGACGCCACGGA
AGGCAACGGCACCGACGGCAAACTGAACAAAAAAGACAAGAACATGCAGA
AGAAAGGCACCTCCGCCACCACCTCCGACTCGGCCACTGCCTCCTATGAA
GGCTCGAGCATCATGTCCATCGATGAACGCAGGGAAGGAAGCATGCAGGC
CGGTGTCATGGGTGGCCCCAGCAAGGCGGGAACGTTTGGAGCATCGGGCG
CCCCGGCAGGTGTCCGTGTTGTGGCGGGGTACGAGATCCAGGACACGCTG
GGGAAAGGCATGAGTGGGAAGGTGAAGAGGGGCTATAACCACAGCAGGTA
CGGCGGGCGGAGGCAGAATGGGAAAGAGGCAGCGAGACGGAGAAAATTAA
CAAATGTTTCAAGCACACATACGAAACACTCAATTCTCACGCTCACCCTT
CTTTCCTCCCTTCCTCCCTTCCTTTCCTTCTCCCCCAGCGGCGAGTACGT
GGCTCTCAAGGTTATCGACAAACAGTCCACCCCCCGACGGGTGCTCCAGA
TGCTCGGCACGGAGATCGCTGCCATGAAGGCGTTGGACAACCACCCTTAC
ATCCTGTCCCTGCTCCACTACGACATGTCGTGCTCCTACCCGAGGAAGAA
GGGAGGGGCCAGGGACGTGGTCCTCCTGGCCCTAGACCTCGCCGAGGGGG
GGGAGTTGTTTGATTTTATGATGTACACAGGCGCATTTTCGGAGGTGAGG
AGGGAGGGAGAGAGGGAGGGAGGGAGGGAGGGAAGGCAACGGGACAGGAG
GGAGGGTAATCCCGTACCAATCTTTCACCTCTCTCTCCCTCCCCCTCTCC
TTCCCCCTTTCCCTCCCCCCAGAGCATCGCCAAGGCCATATTCAAGCAGC
TCACGGACGCCCTCTCCTTCTGCCACGAGCGTGGGATCTACCATCGGGAC
ATCAAGCCGGAGAACCTCCTCCTCGACTCCAACTTCCAGCTCAAGGTACG
TTCTCCCCCCTCTCCCCCCTTCCCACCCTCTCTCCAATGCAAACTCACCC
TCTTCTTCTCCCTCCTCTTCTCCCTCCCAGGTCGCTGATTTCGGCCTGGC
CGCCATGCGTGCCTCCCCGGAAGAGTTGCTCAAGACGGAGTGTGGAACCC
GTTCCTACATGGCTCCCGAGGTGCTTGCCCGTCAACAGGTATGTCCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTTTCTAGTCCTCTCTCA
GTCTCATCGTTCGTTTGGATGACCATGCGACCCCTCCCTCATTCCCCCCC
TTATTTCACACTCCCAAATAACATTAACTCGAACAGTACGACGGTGCCAA
GGCCGACTGCTGGTCCTCGGGTGTAGTGCTCTTCATCATGCTCAGCGGCA
ACCCACCCTTCCAGATGGCCCGCCCTGGTGACTGGTGGTTCAACCAATTT
CAGGTAGGGGGGAAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGCTGGT
AGTACAATACAACATTTGAGAACAGAGTCCAGCGCGAGGCGGCACTGTCA
CCTTCTCATCCAAATCCCTCCCTCCTTCCCTCCCCTCTTCTTCTTCTTTT
GTCGCCTTTCCCACAGGAGGGTCGTCCGGATCGGTTCTGGAAGTCGCACA
AGCGCTACACTCCCGACTTCCCTGAACCCGCCCAAAACCTCCTCACCCGC
ATCTTCAACCCCAACCCCGCCAAGCGCCCTTCGGTACGTCCCTCCTTCCC
TCCTTCCTTCCCTCCTTCCTATGGTTTCCACGATAAACCGGTGTTGTTTG
TCGAGCCCTTCTTCCTTCCCTCCCACTAACCCCCCCCCCCTTTAATCCCC
ATCCCCTGATGCACATAGGTCACGGACCTGAACAAGGACGCATGGCTGTC
CTCGAGCACCCTACACCCGGCTGAGGTCAGCCAGGAGCTGGCCACTCGCA
AAGAGAAGATCAAGGTACCTCCCTCCCTCCCTCCCTCCCTCCCTCCCATT
TTCCCTCACGGTTCTTATATGTATACATCTGTCTTTTCGGGAGAGATTTG
ACTCACGTTTACTCCCCTCATCCCTTGTTGATCTATATTTATAACCTCCT
TCTTCCCTTTTGAATTTGAATTTTTGAATACGACTTACACTGTAGACCGA
GAAGGAGTTGGAGAAGGAGCGCGCACGTCGCAAGAAGGCTGCCGGGCAGT
ACGGCAAGGGCGGGAGCAAGGTACGCAGGGAGAGAGGGAGGGAGGGAGGG
AGGGAGAGAAAGGGGGGGGGGGGGGGGGGGGGGGAAGTCAATGCCTCGGA
TTGCGAGAGTAAATACCTGGATGAACTTCTCATATTCACCCTCCCGCCCT
CCCTCCCAGGACATTGATCCGGACAGGGTCAAGCACCGCGACATCGCCGC
CGACGGCGAGTCGCCCTCCCTCCCCGAATCCCCTGCGCCGTCCCCTCCTG
CTGGCGTGGCCGACCTGCTTACCAACCTCTACTCGGCCGAAGAGCCCTCG
GTTGTCCTTCGACGGGCCAAGGAAGCACTGGAAGTGATGGGCGGGAAACT
GACCGTTAAGGGCCCATATCACCTCCAAGCCCTCCTGCCAGTGGACGGTC
CGACGCTGGTGCAGGTGGACGTGAAGGTTTACTCGGAGGGAGGGAAGGAC
GGCGGGGACGCTGAGGGTCGTATCCAGGTGTTGAGCGTGACGAGAAAGCA
GGGAGACCCGTTGGGATTCCAGAAGGTCTTCCTAGCGTTTAGGAATCAGA
CGACGGATTTGCACGGGGAGGGCGGGATGGACAGCGGGGAAAGCACGGAG
GAGGGGGTGGGG

Coding sequence (CDS) from alignment at scaffold_28:197802..201613+

>mRNA_8803 ID=mRNA_8803|Name=jgi.p|Nanoce1779_2|604079|organism=Nannochloropsis oceanica|type=CDS|length=456bp|location=Sequence derived from alignment at scaffold_28:197802..201613+ (Nannochloropsis oceanica)
ATGTACTTCGTGTTCAGGGCCTTGCACGTCTTGCTTGTGGTCGTGCTTTG
TTTTGTTTTGTCCAACCCTCAATGTTCTGCCGACAAGACATTCCTTTTCA
TTCCCGCATCAAGGCGAAGAAGAGGTGCTCCCCCTTCCTCCTGCTCCCCC
CTCACAGTCGCGAGGCAGGTCAGAGTGGAAAGGTGCAAATATGTTTGTAA
TGGGCTTGTGTCCCTCCAAACCTCCACCACACCACCTTTTCCACCCCACA
CGACTTGCACACGACACAGCACGCGGCGGTGGAACGACTTTGGGAAGAAC
AACTTGGTTGCCGCATGGCTGTCTTTATCCTGCGCTACAGCACCCACCGG
TGTCTCATGTCCACCACCATCTCCCACGTCACGACAACCCCAAGCTACAC
CAGCCCTCCTCACACACAGGCGCGGGCCTCTAGCCATGCCAAGCGCCAAA
GCCTGA

Synonyms

Publications