jgi.p|Nanoce1779_2|574503, mRNA_880 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|574503
Unique Name	mRNA_880
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2102
Alignment location	scaffold_2:650639..652740 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	574589
Track	FilteredModels2
ProteinId	574503

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:650639..652740 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|574503	gene_880	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|574503	mRNA_880-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_880	CDS_880	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:650639..652740-
coding sequence from alignment at scaffold_2:650639..652740-

mRNA sequence

>mRNA_880 ID=mRNA_880|Name=jgi.p|Nanoce1779_2|574503|organism=Nannochloropsis oceanica|type=mRNA|length=2102bp
ACTCAGACTTCGGAGCAAGACAAGAGGCTCGACTTCTTAGGCAGACGAAC
ACGCCGTACATCACACACACTATGCCACACCACACAATCAAGAATTATCA
ACACAGGCATTAAAAGGCTTTCGTGCATGAGAGTGTGGGCGGGCAGCTTG
TTTGTTCCCGGGGGCTGCAGTCATGACCATGCCCTGTCAGCGTAATCCCA
TCGCGACATGTTCTTCCATGCTCTCTGTGGATACAATAGGGCTAGAGTAC
ATCTCGTCTTGCCACCACAGAGTCTCCCTATACCGCCAAAGAATTCGTGC
CTGCAGTTCAGGATGTGTGCCGTCGTGCGGCTGCCGCACACTTATGCAAA
ACCAAGACCTCTCCGCCATCATGCAACATCATCATAAGCCTCCTCACCCC
TGTGCCCATCCTTTTCCTCGTCCACCATCATCACAGACAATATGTCGTCT
TCTCTGGCGGACATGATACTGGGCAACAGGAAGCGGACATGCGACCTGTA
CAGCGCCGAGACCGCCAGTAGCGCCCTGTCGCCCTTCTTGCCCACGCAAA
AGCTTAAAGTGGCCATAAAGGTCAATCAAGAATATAACGTTCCTCGCGCG
TCCGCCACGGCTCCACCACTCCCCATTCAACACGAAGGCGAGGCCTCATC
CGCCACAAGTGTCGATGGGGGTCCTCTGGGTGCAGCAGCGGCGGCGGCGG
GCGTGGGTAAGTCGAAGAAAGATGCCACTGACACACTCAACATCCTCAAT
TCGTTGCGGCACGAGGAGGAAGAGAGGGAGCTGCAGCATTACCGAGGCAG
CAACGGCGGGTCCCGCGCTGCAAGCGGCGGGTCATTGGTCGCATACAAAG
GCAGCAGTACAAGCGGTACCATGGTCACAAGTACGCGCACTGCCGCCGAA
GCTCCACCAGGCGCAGCAGCAGCGGCGGCGGCGGGTATTGGTACGGCGTC
GACAGCGCTGGCACTGAAGCGTGCTCCTGCCAAGGTACCGACGCCTACTT
GGCATGCGCCCTGGAAGCTGCACTCAGTGGTGGCAGGTCATTTGGGATGG
GTACGTGCTGTAGCTTTTGATCCAGCGAATGAGTGGTTCGTCACGGGCTC
GGCGGATCGAACCATTAAGGTCTGGGACCTCGCCAAGTGCGCGGCAGGGG
CGGAGGGAGGGTTAAGACTGACGTTGACAGGGCACATTTCTGCCGTAAGG
GCCTTGGCAGTGTCGAATCGGCACCCGTATTTGTTCTCGGCCGCAGAGGA
TAAGACGGTGAAATGTTGGGATTTGGAGCAGAACAAGGTGATTCGTCACT
ATCATGGCCATTTGTCGGGTGTGTATAGCTTGGCTTTGCACCCCACCCTT
GATATTTTAGTGACGGGAGGGAGGGATTCTGTGGCCCGCGTGTGGGATAT
GCGGACAAAGATGCAGGTACATGTGTTGGGGGGGCACACGAATACGGTAG
GGGTTGTAGCGACAAATTCTGTGGACCCCCAGGTTATAACGGGGTCGTAT
GATAGCACGATTAAATTGTGGGATATAATCGCGGGGAAGAGTATGGCGAC
CTTGACCAATCACAAAAAGGCCGTGCGTGATCTGAAGGTGCACCCGAAGG
AGCTGTCTTTTGTGTCTGGGGCACAGGATAACCTCAAGAAGTGGCAAGTG
AGGGATGGAAAGTTTTTGAAGAACCTAAGTGGGCACAATGCGGTGATCAA
CTCTCTGGCCGTGAATGAAGATAATGTGCTGGTCTCATGTGGGGACAATG
GAAGTTTGCGGTTTTGGGATTACCAGACTGGGTATTGCTTCCAGAAATTG
GAGACGATAGTCCAGCCGGGGAGTTTGGATTGCGAGGCGGGGATATATGC
GTCGGCGTTTGATATGAGTGGCACGAGATTTTTGACTTGTGAAGCGGACA
AGTCGATCAAGATTTGGAAGGAGGATGCGGAGGCAACGGAGGAGACGCAC
CCAGTGGATATGGAGGGGTGGAAGCAGGAGTGTTTGGCGCATAAGCGATG
GTAGGGGGAGGAAGAGGAGGGTGGAAAGAAGGTGAAAAGGCAATGTACCA
TCTATAACGACGAAGAAAAGAAAGAATAAGTACGTGGGAAAAGCAATAGA
GC

protein sequence of jgi.p|Nanoce1779_2|574503

>mRNA_880-protein ID=mRNA_880-protein|Name=jgi.p|Nanoce1779_2|574503|organism=Nannochloropsis oceanica|type=polypeptide|length=521bp
MSSSLADMILGNRKRTCDLYSAETASSALSPFLPTQKLKVAIKVNQEYNV
PRASATAPPLPIQHEGEASSATSVDGGPLGAAAAAAGVGKSKKDATDTLN
ILNSLRHEEEERELQHYRGSNGGSRAASGGSLVAYKGSSTSGTMVTSTRT
AAEAPPGAAAAAAAGIGTASTALALKRAPAKVPTPTWHAPWKLHSVVAGH
LGWVRAVAFDPANEWFVTGSADRTIKVWDLAKCAAGAEGGLRLTLTGHIS
AVRALAVSNRHPYLFSAAEDKTVKCWDLEQNKVIRHYHGHLSGVYSLALH
PTLDILVTGGRDSVARVWDMRTKMQVHVLGGHTNTVGVVATNSVDPQVIT
GSYDSTIKLWDIIAGKSMATLTNHKKAVRDLKVHPKELSFVSGAQDNLKK
WQVRDGKFLKNLSGHNAVINSLAVNEDNVLVSCGDNGSLRFWDYQTGYCF
QKLETIVQPGSLDCEAGIYASAFDMSGTRFLTCEADKSIKIWKEDAEATE
ETHPVDMEGWKQECLAHKRW*

mRNA from alignment at scaffold_2:650639..652740-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_880 ID=mRNA_880|Name=jgi.p|Nanoce1779_2|574503|organism=Nannochloropsis oceanica|type=mRNA|length=2102bp|location=Sequence derived from alignment at scaffold_2:650639..652740- (Nannochloropsis oceanica)
ACTCAGACTTCGGAGCAAGACAAGAGGCTCGACTTCTTAGGCAGACGAAC
ACGCCGTACATCACACACACTATGCCACACCACACAATCAAGAATTATCA
ACACAGGCATTAAAAGGCTTTCGTGCATGAGAGTGTGGGCGGGCAGCTTG
TTTGTTCCCGGGGGCTGCAGTCATGACCATGCCCTGTCAGCGTAATCCCA
TCGCGACATGTTCTTCCATGCTCTCTGTGGATACAATAGGGCTAGAGTAC
ATCTCGTCTTGCCACCACAGAGTCTCCCTATACCGCCAAAGAATTCGTGC
CTGCAGTTCAGGATGTGTGCCGTCGTGCGGCTGCCGCACACTTATGCAAA
ACCAAGACCTCTCCGCCATCATGCAACATCATCATAAGCCTCCTCACCCC
TGTGCCCATCCTTTTCCTCGTCCACCATCATCACAGACAATATGTCGTCT
TCTCTGGCGGACATGATACTGGGCAACAGGAAGCGGACATGCGACCTGTA
CAGCGCCGAGACCGCCAGTAGCGCCCTGTCGCCCTTCTTGCCCACGCAAA
AGCTTAAAGTGGCCATAAAGGTCAATCAAGAATATAACGTTCCTCGCGCG
TCCGCCACGGCTCCACCACTCCCCATTCAACACGAAGGCGAGGCCTCATC
CGCCACAAGTGTCGATGGGGGTCCTCTGGGTGCAGCAGCGGCGGCGGCGG
GCGTGGGTAAGTCGAAGAAAGATGCCACTGACACACTCAACATCCTCAAT
TCGTTGCGGCACGAGGAGGAAGAGAGGGAGCTGCAGCATTACCGAGGCAG
CAACGGCGGGTCCCGCGCTGCAAGCGGCGGGTCATTGGTCGCATACAAAG
GCAGCAGTACAAGCGGTACCATGGTCACAAGTACGCGCACTGCCGCCGAA
GCTCCACCAGGCGCAGCAGCAGCGGCGGCGGCGGGTATTGGTACGGCGTC
GACAGCGCTGGCACTGAAGCGTGCTCCTGCCAAGGTACCGACGCCTACTT
GGCATGCGCCCTGGAAGCTGCACTCAGTGGTGGCAGGTCATTTGGGATGG
GTACGTGCTGTAGCTTTTGATCCAGCGAATGAGTGGTTCGTCACGGGCTC
GGCGGATCGAACCATTAAGGTCTGGGACCTCGCCAAGTGCGCGGCAGGGG
CGGAGGGAGGGTTAAGACTGACGTTGACAGGGCACATTTCTGCCGTAAGG
GCCTTGGCAGTGTCGAATCGGCACCCGTATTTGTTCTCGGCCGCAGAGGA
TAAGACGGTGAAATGTTGGGATTTGGAGCAGAACAAGGTGATTCGTCACT
ATCATGGCCATTTGTCGGGTGTGTATAGCTTGGCTTTGCACCCCACCCTT
GATATTTTAGTGACGGGAGGGAGGGATTCTGTGGCCCGCGTGTGGGATAT
GCGGACAAAGATGCAGGTACATGTGTTGGGGGGGCACACGAATACGGTAG
GGGTTGTAGCGACAAATTCTGTGGACCCCCAGGTTATAACGGGGTCGTAT
GATAGCACGATTAAATTGTGGGATATAATCGCGGGGAAGAGTATGGCGAC
CTTGACCAATCACAAAAAGGCCGTGCGTGATCTGAAGGTGCACCCGAAGG
AGCTGTCTTTTGTGTCTGGGGCACAGGATAACCTCAAGAAGTGGCAAGTG
AGGGATGGAAAGTTTTTGAAGAACCTAAGTGGGCACAATGCGGTGATCAA
CTCTCTGGCCGTGAATGAAGATAATGTGCTGGTCTCATGTGGGGACAATG
GAAGTTTGCGGTTTTGGGATTACCAGACTGGGTATTGCTTCCAGAAATTG
GAGACGATAGTCCAGCCGGGGAGTTTGGATTGCGAGGCGGGGATATATGC
GTCGGCGTTTGATATGAGTGGCACGAGATTTTTGACTTGTGAAGCGGACA
AGTCGATCAAGATTTGGAAGGAGGATGCGGAGGCAACGGAGGAGACGCAC
CCAGTGGATATGGAGGGGTGGAAGCAGGAGTGTTTGGCGCATAAGCGATG
GTAGGGGGAGGAAGAGGAGGGTGGAAAGAAGGTGAAAAGGCAATGTACCA
TCTATAACGACGAAGAAAAGAAAGAATAAGTACGTGGGAAAAGCAATAGA
GC

Coding sequence (CDS) from alignment at scaffold_2:650639..652740-

>mRNA_880 ID=mRNA_880|Name=jgi.p|Nanoce1779_2|574503|organism=Nannochloropsis oceanica|type=CDS|length=1563bp|location=Sequence derived from alignment at scaffold_2:650639..652740- (Nannochloropsis oceanica)
ATGTCGTCTTCTCTGGCGGACATGATACTGGGCAACAGGAAGCGGACATG
CGACCTGTACAGCGCCGAGACCGCCAGTAGCGCCCTGTCGCCCTTCTTGC
CCACGCAAAAGCTTAAAGTGGCCATAAAGGTCAATCAAGAATATAACGTT
CCTCGCGCGTCCGCCACGGCTCCACCACTCCCCATTCAACACGAAGGCGA
GGCCTCATCCGCCACAAGTGTCGATGGGGGTCCTCTGGGTGCAGCAGCGG
CGGCGGCGGGCGTGGGTAAGTCGAAGAAAGATGCCACTGACACACTCAAC
ATCCTCAATTCGTTGCGGCACGAGGAGGAAGAGAGGGAGCTGCAGCATTA
CCGAGGCAGCAACGGCGGGTCCCGCGCTGCAAGCGGCGGGTCATTGGTCG
CATACAAAGGCAGCAGTACAAGCGGTACCATGGTCACAAGTACGCGCACT
GCCGCCGAAGCTCCACCAGGCGCAGCAGCAGCGGCGGCGGCGGGTATTGG
TACGGCGTCGACAGCGCTGGCACTGAAGCGTGCTCCTGCCAAGGTACCGA
CGCCTACTTGGCATGCGCCCTGGAAGCTGCACTCAGTGGTGGCAGGTCAT
TTGGGATGGGTACGTGCTGTAGCTTTTGATCCAGCGAATGAGTGGTTCGT
CACGGGCTCGGCGGATCGAACCATTAAGGTCTGGGACCTCGCCAAGTGCG
CGGCAGGGGCGGAGGGAGGGTTAAGACTGACGTTGACAGGGCACATTTCT
GCCGTAAGGGCCTTGGCAGTGTCGAATCGGCACCCGTATTTGTTCTCGGC
CGCAGAGGATAAGACGGTGAAATGTTGGGATTTGGAGCAGAACAAGGTGA
TTCGTCACTATCATGGCCATTTGTCGGGTGTGTATAGCTTGGCTTTGCAC
CCCACCCTTGATATTTTAGTGACGGGAGGGAGGGATTCTGTGGCCCGCGT
GTGGGATATGCGGACAAAGATGCAGGTACATGTGTTGGGGGGGCACACGA
ATACGGTAGGGGTTGTAGCGACAAATTCTGTGGACCCCCAGGTTATAACG
GGGTCGTATGATAGCACGATTAAATTGTGGGATATAATCGCGGGGAAGAG
TATGGCGACCTTGACCAATCACAAAAAGGCCGTGCGTGATCTGAAGGTGC
ACCCGAAGGAGCTGTCTTTTGTGTCTGGGGCACAGGATAACCTCAAGAAG
TGGCAAGTGAGGGATGGAAAGTTTTTGAAGAACCTAAGTGGGCACAATGC
GGTGATCAACTCTCTGGCCGTGAATGAAGATAATGTGCTGGTCTCATGTG
GGGACAATGGAAGTTTGCGGTTTTGGGATTACCAGACTGGGTATTGCTTC
CAGAAATTGGAGACGATAGTCCAGCCGGGGAGTTTGGATTGCGAGGCGGG
GATATATGCGTCGGCGTTTGATATGAGTGGCACGAGATTTTTGACTTGTG
AAGCGGACAAGTCGATCAAGATTTGGAAGGAGGATGCGGAGGCAACGGAG
GAGACGCACCCAGTGGATATGGAGGGGTGGAAGCAGGAGTGTTTGGCGCA
TAAGCGATGGTAG

Synonyms

Publications