|
|
Properties
| Property Name | Value |
|---|
| TranscriptId | 604133 |
| Track | FilteredModels2 |
| ProteinId | 604047 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_28 | supercontig | scaffold_28:179597..181800 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_8797 ID=mRNA_8797|Name=jgi.p|Nanoce1779_2|604047|organism=Nannochloropsis oceanica|type=mRNA|length=1861bp
ACAGGCACAAGCGACACCACCAAATCCTCAAGCATCCCTCAAACCTCGAC
CAGGCGGACATGCCCGACTCTTCCAATGCCACCGATTACCCTGCATATAT
TGCCGGCCTCCGGGACTTGCGCCAACTCGAACAGTCTATCAATGTAATCC
CTTATCGGCCCCGTCAGAGCGATTCTACTGACGACGCCTCCATCCCCGCC
ATCGGCCAGCATAGCGAAGAGAAGATCAAGGCCTCCCCGGCCCTCAAGGC
CTTTGCCGGGAGCGCTGGGGGGCTTGTCGAGGCTGTTACCCTGCAACCTG
TCGATACCATAAAGACAAGAATGCAGCTTCATCCGACCCTGTACCCGTCC
ATGATTCAGACGGCCAAAAGAATAACTGCCGAGGAGTCCGTGCCTGCCTT
GTGGAAGGGTCTCACGCCGTTTGCCACGCACTTGTTCAGCAAATATGCCT
TGCGGTTTGGGACGAACGCCACCTTTCAATCATTGCTGACAGATAAGGAG
ACCGGCGTTCTCTCGACCTCCCGCCGTCTTCTCGCGGGCCTTGGGGCGGG
GATTACCGAAGCGATCCTGATAGTGACCCCTTTCGACGTCGTCAAGGTGA
GGCTACAGGCCCAACATGGCCTGGACAAGTCTCTCCTTCAGTACCACGGA
CCGGTGGACGCCGCCCGGAAAATCGTCTCTCAGGAGGGATGGGGGGCGTT
GTGGTCAGGGGTGACTCCCACCATCTGCAGGAACGGGATCCAGCAAGCGT
CGATGTTTTATTTGAAGCAGCTGATTGACGAGGAGGTGTGGGGCTTGAAC
ACACCGGCGGCAGGAGGGAAGGAGGGCGTGAAGGAGGGAGGGGTGGTGGA
GAGGGGGAAAAAGCTGACGGTGTGGCAGTCGATGATGTCGGGATTTATGG
CGTCATGTCCCGGCCTGGTGATGACCAATCCCTTCGACATTGTCAAGACC
CGCCTCGCCCTTCAAGCGAAAAAAGGCCGGCCTGTCTACACGGGCGTGGC
CCATGCGCTCTACACCATCGCCACGCAAGAAGGCATCCCTACCCTGTACC
GCGGCTTGCTTCCGCGCCTCCTGCGGGTGCCACCCGGCATGGCCGTGACA
TGGGGAGTCTCGGACCAGCTCGTCCAGTGGGTGGAGAAGTAATTTAAGGC
GGGTAAAGGAGAGATGGAGGGAGGGTGAGGGAGGGAGAAAGTGAGGGGAG
GGGCTGGAGGGTCTGTATGTAAACATATATAAAAACAATTGTAGAGAGGC
GCAAAGGGAAAGATCCGTTCAGAAGGATGTTTCGCGTGAGAGCATGGAAC
ATTCCTCGACAAACAAAGTACTAGCTCGGGTCGGAAGGAGAGAGAGCGGT
GATTGAAGATGACGTCCGCCTTAGTCTCCCCAGAAAGACAAGTAATTGGT
AATTCCCAGCCCCGATCTTGGCTCGGAAAGCAGGGGAATATTGTATTTAG
CTTGAAGACACCTTAATGCTCATGGAATTCGTAAAACTGCACATTTGTAT
GTGAAAGGAGACCCACTAATTTTGTTTGTCGCTGCCGTCAGCCCTATTCA
TGAGAGTGGCACCTGGGATGGGAGGTTGAAGGGAGAGGAAATGAGAGGAA
GCTAGGCTTAGGGAGAGAGAGGTAGTGAAGTGATTGTGGAGACGTGGAAA
GGGGGAAGAGAGGGAGCAATTCTTCTCGGTATATGTATATGTGTTGATAC
GAGATACAGAGAAGAAAAGAGTGTCTGCACACAAGGAAACAGGAAGGCCT
GTGATGCCGCCTTGGTGCCAGGGGAATGCCATTGAGTGAAGACGACCAAA
CCACAAGTAGTGTGAACCGAATCCACACATGTGCTTACTGTCCATGATGT
TCATGTCGTCT back to topprotein sequence of jgi.p|Nanoce1779_2|604047 >mRNA_8797-protein ID=mRNA_8797-protein|Name=jgi.p|Nanoce1779_2|604047|organism=Nannochloropsis oceanica|type=polypeptide|length=361bp
MPDSSNATDYPAYIAGLRDLRQLEQSINVIPYRPRQSDSTDDASIPAIGQ
HSEEKIKASPALKAFAGSAGGLVEAVTLQPVDTIKTRMQLHPTLYPSMIQ
TAKRITAEESVPALWKGLTPFATHLFSKYALRFGTNATFQSLLTDKETGV
LSTSRRLLAGLGAGITEAILIVTPFDVVKVRLQAQHGLDKSLLQYHGPVD
AARKIVSQEGWGALWSGVTPTICRNGIQQASMFYLKQLIDEEVWGLNTPA
AGGKEGVKEGGVVERGKKLTVWQSMMSGFMASCPGLVMTNPFDIVKTRLA
LQAKKGRPVYTGVAHALYTIATQEGIPTLYRGLLPRLLRVPPGMAVTWGV
SDQLVQWVEK* back to topmRNA from alignment at scaffold_28:179597..181800- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_8797 ID=mRNA_8797|Name=jgi.p|Nanoce1779_2|604047|organism=Nannochloropsis oceanica|type=mRNA|length=2204bp|location=Sequence derived from alignment at scaffold_28:179597..181800- (Nannochloropsis oceanica)
ACAGGCACAAGCGACACCACCAAATCCTCAAGCATCCCTCAAACCTCGAC
CAGGCGGACATGCCCGACTCTTCCAATGCCACCGATTACCCTGCATATAT
TGCCGGCCTCCGGGACTTGCGCCAACTCGAACAGTCTATCAATGTAATCC
CTTATCGGCCCCGTCAGAGCGATTCTACTGACGACGCCTCCATCCCCGCC
ATCGGCCAGCATAGCGAAGAGAAGATCAAGGCCTCCCCGGCCCTCAAGGC
CTTTGCCGGGAGCGCTGGGGGGCTTGTCGAGGCTGTTACCCTGCAACCTG
TCGATACCATAAAGACAAGAATGCAGCTTCATCCGACCCTGTACCCGTCC
ATGATTCAGACGGCCAAAAGAATAACTGCCGAGGAGTCCGTGCCTGCCTT
GTGGAAGGGTCTCACGCCGTTTGCCACGCACTTGTTCAGCAAATATGCCT
TGCGGTTTGGGACGAACGCCACCTTTCAATCATTGCTGACAGATAAGGAG
ACCGGTACGTGAAGAATGGAGTGAAGAGGGGTAGGGAGGGAAGAACAGAG
AAGGTGCTTGCGATGTAGGAACAAGGGAAGGGGAAAGGGCGGGGGGAAAG
GAAGGGATTTGACTGTTAACAGAGGGTGCTCGTCCTTCTTTGTCGTTTAC
TCATGTATTCTTCCTCCCCCCTCCCTCCCTCCCACCCTCCCTCCCTCCTC
CCTCCTCACAGGCGTTCTCTCGACCTCCCGCCGTCTTCTCGCGGGCCTTG
GGGCGGGGATTACCGAAGCGATCCTGATAGTGACCCCTTTCGACGTCGTC
AAGGTGAGGCTACAGGCCCAACATGGCCTGGACAAGTCTCTCCTTCAGTA
CCACGGACCGGTGGACGCCGCCCGGAAAATCGTCTCTCAGGAGGGATGGG
GGGCGTTGTGGTCAGGGGTGACTCCCACCATCTGCAGGAACGGGATCCAG
CAAGCGTCGATGTTTTATTTGAAGCAGCTGATTGACGAGGAGGTGTGGGG
CTTGAACACACCGGCGGCAGGAGGGAAGGAGGGCGTGAAGGAGGGAGGGG
TGGTGGAGAGGGGGAAAAAGCTGACGGTGTGGCAGTCGATGATGTCGGGA
TTTATGGCGTCATGTCCCGGCCTGGTGATGACCAATCCCTTCGACATTGT
CAAGGTAAGACGAAGACAATGGAATGAGACAGGAGCAGGAGGAGGAGGAG
GAACTCGATGCCCCTCGCTTGCATGCCCGCGATTTAGCCGTCCTCCCTTC
CCTCCCTCTCACCCTCCCTCCCTTTCTCTCCTCCCCTTAGACCCGCCTCG
CCCTTCAAGCGAAAAAAGGCCGGCCTGTCTACACGGGCGTGGCCCATGCG
CTCTACACCATCGCCACGCAAGAAGGCATCCCTACCCTGTACCGCGGCTT
GCTTCCGCGCCTCCTGCGGGTGCCACCCGGCATGGCCGTGACATGGGGAG
TCTCGGACCAGCTCGTCCAGTGGGTGGAGAAGTAATTTAAGGCGGGTAAA
GGAGAGATGGAGGGAGGGTGAGGGAGGGAGAAAGTGAGGGGAGGGGCTGG
AGGGTCTGTATGTAAACATATATAAAAACAATTGTAGAGAGGCGCAAAGG
GAAAGATCCGTTCAGAAGGATGTTTCGCGTGAGAGCATGGAACATTCCTC
GACAAACAAAGTACTAGCTCGGGTCGGAAGGAGAGAGAGCGGTGATTGAA
GATGACGTCCGCCTTAGTCTCCCCAGAAAGACAAGTAATTGGTAATTCCC
AGCCCCGATCTTGGCTCGGAAAGCAGGGGAATATTGTATTTAGCTTGAAG
ACACCTTAATGCTCATGGAATTCGTAAAACTGCACATTTGTATGTGAAAG
GAGACCCACTAATTTTGTTTGTCGCTGCCGTCAGCCCTATTCATGAGAGT
GGCACCTGGGATGGGAGGTTGAAGGGAGAGGAAATGAGAGGAAGCTAGGC
TTAGGGAGAGAGAGGTAGTGAAGTGATTGTGGAGACGTGGAAAGGGGGAA
GAGAGGGAGCAATTCTTCTCGGTATATGTATATGTGTTGATACGAGATAC
AGAGAAGAAAAGAGTGTCTGCACACAAGGAAACAGGAAGGCCTGTGATGC
CGCCTTGGTGCCAGGGGAATGCCATTGAGTGAAGACGACCAAACCACAAG
TAGTGTGAACCGAATCCACACATGTGCTTACTGTCCATGATGTTCATGTC
GTCT back to topCoding sequence (CDS) from alignment at scaffold_28:179597..181800- >mRNA_8797 ID=mRNA_8797|Name=jgi.p|Nanoce1779_2|604047|organism=Nannochloropsis oceanica|type=CDS|length=3249bp|location=Sequence derived from alignment at scaffold_28:179597..181800- (Nannochloropsis oceanica)
ACCCGCCTCGCCCTTCAAGCGAAAAAAGGCCGGCCTGTCTACACGGGCGT
GGCCCATGCGCTCTACACCATCGCCACGCAAGAAGGCATCCCTACCCTGT
ACCGCGGCTTGCTTCCGCGCCTCCTGCGGGTGCCACCCGGCATGGCCGTG
ACATGGGGAGTCTCGGACCAGCTCGTCCAGTGGGTGGAGAAGTAAGCGTT
CTCTCGACCTCCCGCCGTCTTCTCGCGGGCCTTGGGGCGGGGATTACCGA
AGCGATCCTGATAGTGACCCCTTTCGACGTCGTCAAGGTGAGGCTACAGG
CCCAACATGGCCTGGACAAGTCTCTCCTTCAGTACCACGGACCGGTGGAC
GCCGCCCGGAAAATCGTCTCTCAGGAGGGATGGGGGGCGTTGTGGTCAGG
GGTGACTCCCACCATCTGCAGGAACGGGATCCAGCAAGCGTCGATGTTTT
ATTTGAAGCAGCTGATTGACGAGGAGGTGTGGGGCTTGAACACACCGGCG
GCAGGAGGGAAGGAGGGCGTGAAGGAGGGAGGGGTGGTGGAGAGGGGGAA
AAAGCTGACGGTGTGGCAGTCGATGATGTCGGGATTTATGGCGTCATGTC
CCGGCCTGGTGATGACCAATCCCTTCGACATTGTCAAGATGCCCGACTCT
TCCAATGCCACCGATTACCCTGCATATATTGCCGGCCTCCGGGACTTGCG
CCAACTCGAACAGTCTATCAATGTAATCCCTTATCGGCCCCGTCAGAGCG
ATTCTACTGACGACGCCTCCATCCCCGCCATCGGCCAGCATAGCGAAGAG
AAGATCAAGGCCTCCCCGGCCCTCAAGGCCTTTGCCGGGAGCGCTGGGGG
GCTTGTCGAGGCTGTTACCCTGCAACCTGTCGATACCATAAAGACAAGAA
TGCAGCTTCATCCGACCCTGTACCCGTCCATGATTCAGACGGCCAAAAGA
ATAACTGCCGAGGAGTCCGTGCCTGCCTTGTGGAAGGGTCTCACGCCGTT
TGCCACGCACTTGTTCAGCAAATATGCCTTGCGGTTTGGGACGAACGCCA
CCTTTCAATCATTGCTGACAGATAAGGAGACCGACCCGCCTCGCCCTTCA
AGCGAAAAAAGGCCGGCCTGTCTACACGGGCGTGGCCCATGCGCTCTACA
CCATCGCCACGCAAGAAGGCATCCCTACCCTGTACCGCGGCTTGCTTCCG
CGCCTCCTGCGGGTGCCACCCGGCATGGCCGTGACATGGGGAGTCTCGGA
CCAGCTCGTCCAGTGGGTGGAGAAGTAAGCGTTCTCTCGACCTCCCGCCG
TCTTCTCGCGGGCCTTGGGGCGGGGATTACCGAAGCGATCCTGATAGTGA
CCCCTTTCGACGTCGTCAAGGTGAGGCTACAGGCCCAACATGGCCTGGAC
AAGTCTCTCCTTCAGTACCACGGACCGGTGGACGCCGCCCGGAAAATCGT
CTCTCAGGAGGGATGGGGGGCGTTGTGGTCAGGGGTGACTCCCACCATCT
GCAGGAACGGGATCCAGCAAGCGTCGATGTTTTATTTGAAGCAGCTGATT
GACGAGGAGGTGTGGGGCTTGAACACACCGGCGGCAGGAGGGAAGGAGGG
CGTGAAGGAGGGAGGGGTGGTGGAGAGGGGGAAAAAGCTGACGGTGTGGC
AGTCGATGATGTCGGGATTTATGGCGTCATGTCCCGGCCTGGTGATGACC
AATCCCTTCGACATTGTCAAGATGCCCGACTCTTCCAATGCCACCGATTA
CCCTGCATATATTGCCGGCCTCCGGGACTTGCGCCAACTCGAACAGTCTA
TCAATGTAATCCCTTATCGGCCCCGTCAGAGCGATTCTACTGACGACGCC
TCCATCCCCGCCATCGGCCAGCATAGCGAAGAGAAGATCAAGGCCTCCCC
GGCCCTCAAGGCCTTTGCCGGGAGCGCTGGGGGGCTTGTCGAGGCTGTTA
CCCTGCAACCTGTCGATACCATAAAGACAAGAATGCAGCTTCATCCGACC
CTGTACCCGTCCATGATTCAGACGGCCAAAAGAATAACTGCCGAGGAGTC
CGTGCCTGCCTTGTGGAAGGGTCTCACGCCGTTTGCCACGCACTTGTTCA
GCAAATATGCCTTGCGGTTTGGGACGAACGCCACCTTTCAATCATTGCTG
ACAGATAAGGAGACCGACCCGCCTCGCCCTTCAAGCGAAAAAAGGCCGGC
CTGTCTACACGGGCGTGGCCCATGCGCTCTACACCATCGCCACGCAAGAA
GGCATCCCTACCCTGTACCGCGGCTTGCTTCCGCGCCTCCTGCGGGTGCC
ACCCGGCATGGCCGTGACATGGGGAGTCTCGGACCAGCTCGTCCAGTGGG
TGGAGAAGTAAGCGTTCTCTCGACCTCCCGCCGTCTTCTCGCGGGCCTTG
GGGCGGGGATTACCGAAGCGATCCTGATAGTGACCCCTTTCGACGTCGTC
AAGGTGAGGCTACAGGCCCAACATGGCCTGGACAAGTCTCTCCTTCAGTA
CCACGGACCGGTGGACGCCGCCCGGAAAATCGTCTCTCAGGAGGGATGGG
GGGCGTTGTGGTCAGGGGTGACTCCCACCATCTGCAGGAACGGGATCCAG
CAAGCGTCGATGTTTTATTTGAAGCAGCTGATTGACGAGGAGGTGTGGGG
CTTGAACACACCGGCGGCAGGAGGGAAGGAGGGCGTGAAGGAGGGAGGGG
TGGTGGAGAGGGGGAAAAAGCTGACGGTGTGGCAGTCGATGATGTCGGGA
TTTATGGCGTCATGTCCCGGCCTGGTGATGACCAATCCCTTCGACATTGT
CAAGATGCCCGACTCTTCCAATGCCACCGATTACCCTGCATATATTGCCG
GCCTCCGGGACTTGCGCCAACTCGAACAGTCTATCAATGTAATCCCTTAT
CGGCCCCGTCAGAGCGATTCTACTGACGACGCCTCCATCCCCGCCATCGG
CCAGCATAGCGAAGAGAAGATCAAGGCCTCCCCGGCCCTCAAGGCCTTTG
CCGGGAGCGCTGGGGGGCTTGTCGAGGCTGTTACCCTGCAACCTGTCGAT
ACCATAAAGACAAGAATGCAGCTTCATCCGACCCTGTACCCGTCCATGAT
TCAGACGGCCAAAAGAATAACTGCCGAGGAGTCCGTGCCTGCCTTGTGGA
AGGGTCTCACGCCGTTTGCCACGCACTTGTTCAGCAAATATGCCTTGCGG
TTTGGGACGAACGCCACCTTTCAATCATTGCTGACAGATAAGGAGACCG back to top
|