jgi.p|Nanoce1779_2|568814, mRNA_8796 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|568814
Unique NamemRNA_8796
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length366
Alignment locationscaffold_28:177062..178934 +

Link to JBrowse

Properties
Property NameValue
TranscriptId568900
TrackFilteredModels2
ProteinId568814
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_28supercontigscaffold_28:177062..178934 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|568814gene_8796Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|568814mRNA_8796-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8796CDS_8796Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8796 ID=mRNA_8796|Name=jgi.p|Nanoce1779_2|568814|organism=Nannochloropsis oceanica|type=mRNA|length=366bp
ATGAAGGGCAATGTGTCCCTGGGCCCTCTCAAGGTGGAAGAAGCCACGTT
TGGGGCGATCCTCGAGGTAGAGGGGGAGGAGGTGGAAGGGGGGGAGGAGG
GGGCAGGGCCGGGGGCTGAGGAAGGGACGGAGAAAGGGACGGAGGAAGGG
AGGAAGAGGAGGAAGGAGGTGGTCTTGACCTTGACCCCGGCAGACTATTT
GCATAACGAGGGCGGCTTCTACTTCCTCAAAATTATCCGTTACGGTCATT
GGGCCATCGGACAGACTTTTCTCCGAAGAAGATACCTGGAGGTAGATCGA
GCCAACAAGAGGATGGGGTTCGCGATGCCGGTGGAGGGGTGTGTTCCTCC
CTCCCGAGGGAAGTAG
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protein sequence of jgi.p|Nanoce1779_2|568814

>mRNA_8796-protein ID=mRNA_8796-protein|Name=jgi.p|Nanoce1779_2|568814|organism=Nannochloropsis oceanica|type=polypeptide|length=122bp
MKGNVSLGPLKVEEATFGAILEVEGEEVEGGEEGAGPGAEEGTEKGTEEG
RKRRKEVVLTLTPADYLHNEGGFYFLKIIRYGHWAIGQTFLRRRYLEVDR
ANKRMGFAMPVEGCVPPSRGK*
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mRNA from alignment at scaffold_28:177062..178934+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8796 ID=mRNA_8796|Name=jgi.p|Nanoce1779_2|568814|organism=Nannochloropsis oceanica|type=mRNA|length=1873bp|location=Sequence derived from alignment at scaffold_28:177062..178934+ (Nannochloropsis oceanica)
ATGAAGGGCAATGTGTCCCTGGGCCCTCTCAAGGTGGAAGAAGCCACGTT
TGGGGCGATCCTCGAGGTAGGTAGGTAGGGAGGGAGGGAGCGAAGGGGGG
GCTATCATCTCAGTCACTCGGTGTAGGTCCACACACACCTGCTGCCCTTC
AACCCCCACTCACCCTCCTCGCCCGCCCTCCCTCCCTCCCTCCCTCCCTC
CCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCC
TCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCAGGCCTCTCCGGGCTTCT
ACCCCGCACCCGCCGCGGCGGGTATTCTTGGCCTGTCTTTTGGAAACAAC
ACTTTGTGTGGACCCGAACACACCTGCTGGCCCCCCCTCCTTGATTCCCT
CCCTCCCCCGGCACCTGACGCCTTCACCCTGTGCGCCGACGGCGATCGGG
GCGCGGCCCTCGTCCTCGGCGGGGTCGACCATTCGCTGGCCCTGGGCGGG
CGGGAGGGAGGGAGGGAGGCAGGGAGGGAGGGGGGGAAGAAGGGAGGGAT
CGGCTATGTGCCCATGCTTCCTCCTTTTGCTCATTACTGGATCCGGGTGA
AAGACCTGAGGATTCGCGGCGAATCGTTGTTCCTTCCCGTCCTTGCAGCT
GCAGCTGCAGCAGCTGCTGCTGCGGGGCTGGAGGAAGGGAGGCGGTGTGC
GCCCTCCCTCCCTTCCTCGATTTTGGTCCCGCGGCCTCCAATGCCGTGTG
CTCTGGCGTCACGGGCAGCCATCCCCACGGTCACCAGCAGCAGCAGCAGT
GGTGGTGGTGGTGGTGATGGTGGTGGGAGTGCGGAGGAGGCGACCCTCCA
CCCCGCCCTCGACGACGTGCCGCTCGACACGGCCATGGTGGACTCGGGAA
ACAGGTGGGGAAGGAGGAAGGGGGGGACGGAGGGAGGGGCGGAGGTAGGG
GTGGGAACCTGGAGGGGGTTTCACCATTGACAGTGGCGACCATGGGTCGT
GTGAGGGAGGAATAAAAGCCCGCGTACTCACAACACCTCACTTGTGTATC
CCCCCACTCCTTCCCTCCCTCCCTCTCCCTAGTGCTACCTGCTTCCCGGA
GCCTGTCTTCGACGCCCTAAGATTCAGACTCGCCGAGCTGGTCAAGGGTG
AGGAAAGGAGGGAGGGAGGAAGGGAAGAAGGGAGGGAGGGAGGGAGGGGG
GAAGACAAGGACGCAGAGGACGCATCTATGTTTCTTTTTGACGGGGTTTC
GCCCTTGAATCTCACTCACCATCCCCTTTCTTCCCTCCGTCCCTCTGTCC
CTCCCTCCCTCCTTCTCATGTCAAGACGTCCCGGCCGTTGCGGACGTGGC
CGGTGGACAAACCCTCTTTGACGGCTACGGTCGTCGCTTGTCTGTACAAG
AGCTCGCTCTCCTTCCCTCCCTCGACCTCGTTCTAGAGGGGGAGGAGGTG
GAAGGGGGGGAGGAGGGGGCAGGGCCGGGGGCTGAGGAAGGGACGGAGAA
AGGGACGGAGGAAGGGAGGAAGAGGAGGAAGGAGGTGGTCTTGACCTTGA
CCCCGGCAGACTATTTGCATAACGAGGTAAGCAGGGAGGGAGGGAGGGAG
GGAGGGAGGGAGGGAGGGAGGGAGGAAGGGGAAGAGGGACGACTTGCGAG
CACCAAAGCAAGCACCTGTTACTCAAGGACCTGTATCCCCCTCCTCCCCT
CCCTCCCTCCACCCCAGGGCGGCTTCTACTTCCTCAAAATTATCCGTTAC
GGTCATTGGGCCATCGGACAGACTTTTCTCCGAAGAAGATACCTGGAGGT
AGATCGAGCCAACAAGAGGATGGGGTTCGCGATGCCGGTGGAGGGGTGTG
TTCCTCCCTCCCGAGGGAAGTAG
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Coding sequence (CDS) from alignment at scaffold_28:177062..178934+

>mRNA_8796 ID=mRNA_8796|Name=jgi.p|Nanoce1779_2|568814|organism=Nannochloropsis oceanica|type=CDS|length=1098bp|location=Sequence derived from alignment at scaffold_28:177062..178934+ (Nannochloropsis oceanica)
ATGAAGGGCAATGTGTCCCTGGGCCCTCTCAAGGTGGAAGAAGCCACGTT
TGGGGCGATCCTCGAGGTAGAGGGGGAGGAGGTGGAAGGGGGGGAGGAGG
GGGCAGGGCCGGGGGCTGAGGAAGGGACGGAGAAAGGGACGGAGGAAGGG
AGGAAGAGGAGGAAGGAGGTGGTCTTGACCTTGACCCCGGCAGACTATTT
GCATAACGAGGGCGGCTTCTACTTCCTCAAAATTATCCGTTACGGTCATT
GGGCCATCGGACAGACTTTTCTCCGAAGAAGATACCTGGAGGTAGATCGA
GCCAACAAGAGGATGGGGTTCGCGATGCCGGTGGAGGGGTGTGTTCCTCC
CTCCCGAGGGAAGTAGATGAAGGGCAATGTGTCCCTGGGCCCTCTCAAGG
TGGAAGAAGCCACGTTTGGGGCGATCCTCGAGGTAGAGGGGGAGGAGGTG
GAAGGGGGGGAGGAGGGGGCAGGGCCGGGGGCTGAGGAAGGGACGGAGAA
AGGGACGGAGGAAGGGAGGAAGAGGAGGAAGGAGGTGGTCTTGACCTTGA
CCCCGGCAGACTATTTGCATAACGAGGGCGGCTTCTACTTCCTCAAAATT
ATCCGTTACGGTCATTGGGCCATCGGACAGACTTTTCTCCGAAGAAGATA
CCTGGAGGTAGATCGAGCCAACAAGAGGATGGGGTTCGCGATGCCGGTGG
AGGGGTGTGTTCCTCCCTCCCGAGGGAAGTAGATGAAGGGCAATGTGTCC
CTGGGCCCTCTCAAGGTGGAAGAAGCCACGTTTGGGGCGATCCTCGAGGT
AGAGGGGGAGGAGGTGGAAGGGGGGGAGGAGGGGGCAGGGCCGGGGGCTG
AGGAAGGGACGGAGAAAGGGACGGAGGAAGGGAGGAAGAGGAGGAAGGAG
GTGGTCTTGACCTTGACCCCGGCAGACTATTTGCATAACGAGGGCGGCTT
CTACTTCCTCAAAATTATCCGTTACGGTCATTGGGCCATCGGACAGACTT
TTCTCCGAAGAAGATACCTGGAGGTAGATCGAGCCAACAAGAGGATGGGG
TTCGCGATGCCGGTGGAGGGGTGTGTTCCTCCCTCCCGAGGGAAGTAG
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Synonyms
Publications