jgi.p|Nanoce1779_2|220160, mRNA_8795 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|220160
Unique NamemRNA_8795
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length777
Alignment locationscaffold_28:175428..176204 +

Link to JBrowse

Properties
Property NameValue
TranscriptId220246
TrackFilteredModels2
ProteinId220160
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_28supercontigscaffold_28:175428..176204 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|220160gene_8795Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|220160mRNA_8795-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8795CDS_8795Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8795 ID=mRNA_8795|Name=jgi.p|Nanoce1779_2|220160|organism=Nannochloropsis oceanica|type=mRNA|length=777bp
CCCACATAAAGATAACAGGGTCATTAACGCCGCATCTATGCTGTGGCAGA
CCCCTCCCATCTTCGGGATGAGAAAAAGGGGGAAAGGCCGTGGCCCCGGT
CCTGGCAGCCTAGGCACCGATTTCCTTTTCATCCTCCTTCTCCCCTACCT
TCTCCTTCGTCCTTGCGTGGACGCGGCCACCTACATCCCACTCACCCAAG
CCATGAAGGGAAGCATTATCTCGGCTGATGCTCTAGCCAGGAGCGGACGG
GCCGAGGGGAGGAGCAAGGAATCCTCCCTTTCCTCCTCCTCCCCCTCGTC
CTCGCACCTCCGAGGCCGCAATGATCCCACCGACTTCGACAAAGGCACCA
AGGACAACGCTTCGGTGGCTGAAGCAATCCATCATCCGATGACGACGCTA
GACCCCCGGCTGACCGCTTACTTTGCGACGTTGATTTTCGAGGGCAACCA
GGCCCTGCAGTTGCTAGTGGATACGGGCAGGTAGGCAGGGAGGGAGGGAA
GGAAGGATGGGAGGGAAGAGCAGTATGGGACAGAGAAGGGCATGGCGTTT
ACGCGTTTACGTGTTTCATTGCATTTATGTCCATGAAGGTGTGTGACGTG
CATGAAGGTTCGCAGCTGCACTCCTCGCCTGCCTCTCTTTCTCCTTCCGC
CCCCCCCACATTCAAATTTTCAAACGTCCTTGCCCCCACTCTCCCTCATC
ATCCTCCCATGTTGTGGGTCGTCTTAACTTTATCGATACCAACACCTTCC
CTCCCTACCTCCTTCTCTCCCTCCTCA
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protein sequence of jgi.p|Nanoce1779_2|220160

>mRNA_8795-protein ID=mRNA_8795-protein|Name=jgi.p|Nanoce1779_2|220160|organism=Nannochloropsis oceanica|type=polypeptide|length=149bp
MLWQTPPIFGMRKRGKGRGPGPGSLGTDFLFILLLPYLLLRPCVDAATYI
PLTQAMKGSIISADALARSGRAEGRSKESSLSSSSPSSSHLRGRNDPTDF
DKGTKDNASVAEAIHHPMTTLDPRLTAYFATLIFEGNQALQLLVDTGR*
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mRNA from alignment at scaffold_28:175428..176204+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8795 ID=mRNA_8795|Name=jgi.p|Nanoce1779_2|220160|organism=Nannochloropsis oceanica|type=mRNA|length=777bp|location=Sequence derived from alignment at scaffold_28:175428..176204+ (Nannochloropsis oceanica)
CCCACATAAAGATAACAGGGTCATTAACGCCGCATCTATGCTGTGGCAGA
CCCCTCCCATCTTCGGGATGAGAAAAAGGGGGAAAGGCCGTGGCCCCGGT
CCTGGCAGCCTAGGCACCGATTTCCTTTTCATCCTCCTTCTCCCCTACCT
TCTCCTTCGTCCTTGCGTGGACGCGGCCACCTACATCCCACTCACCCAAG
CCATGAAGGGAAGCATTATCTCGGCTGATGCTCTAGCCAGGAGCGGACGG
GCCGAGGGGAGGAGCAAGGAATCCTCCCTTTCCTCCTCCTCCCCCTCGTC
CTCGCACCTCCGAGGCCGCAATGATCCCACCGACTTCGACAAAGGCACCA
AGGACAACGCTTCGGTGGCTGAAGCAATCCATCATCCGATGACGACGCTA
GACCCCCGGCTGACCGCTTACTTTGCGACGTTGATTTTCGAGGGCAACCA
GGCCCTGCAGTTGCTAGTGGATACGGGCAGGTAGGCAGGGAGGGAGGGAA
GGAAGGATGGGAGGGAAGAGCAGTATGGGACAGAGAAGGGCATGGCGTTT
ACGCGTTTACGTGTTTCATTGCATTTATGTCCATGAAGGTGTGTGACGTG
CATGAAGGTTCGCAGCTGCACTCCTCGCCTGCCTCTCTTTCTCCTTCCGC
CCCCCCCACATTCAAATTTTCAAACGTCCTTGCCCCCACTCTCCCTCATC
ATCCTCCCATGTTGTGGGTCGTCTTAACTTTATCGATACCAACACCTTCC
CTCCCTACCTCCTTCTCTCCCTCCTCA
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Coding sequence (CDS) from alignment at scaffold_28:175428..176204+

>mRNA_8795 ID=mRNA_8795|Name=jgi.p|Nanoce1779_2|220160|organism=Nannochloropsis oceanica|type=CDS|length=447bp|location=Sequence derived from alignment at scaffold_28:175428..176204+ (Nannochloropsis oceanica)
ATGCTGTGGCAGACCCCTCCCATCTTCGGGATGAGAAAAAGGGGGAAAGG
CCGTGGCCCCGGTCCTGGCAGCCTAGGCACCGATTTCCTTTTCATCCTCC
TTCTCCCCTACCTTCTCCTTCGTCCTTGCGTGGACGCGGCCACCTACATC
CCACTCACCCAAGCCATGAAGGGAAGCATTATCTCGGCTGATGCTCTAGC
CAGGAGCGGACGGGCCGAGGGGAGGAGCAAGGAATCCTCCCTTTCCTCCT
CCTCCCCCTCGTCCTCGCACCTCCGAGGCCGCAATGATCCCACCGACTTC
GACAAAGGCACCAAGGACAACGCTTCGGTGGCTGAAGCAATCCATCATCC
GATGACGACGCTAGACCCCCGGCTGACCGCTTACTTTGCGACGTTGATTT
TCGAGGGCAACCAGGCCCTGCAGTTGCTAGTGGATACGGGCAGGTAG
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Synonyms
Publications