jgi.p|Nanoce1779_2|604036, mRNA_8794 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|604036
Unique Name	mRNA_8794
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1171
Alignment location	scaffold_28:174337..175507 -

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Properties


Property Name	Value
TranscriptId	604122
Track	FilteredModels2
ProteinId	604036

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_28	supercontig	scaffold_28:174337..175507 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|604036	gene_8794	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|604036	mRNA_8794-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8794	CDS_8794	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_28:174337..175507-
coding sequence from alignment at scaffold_28:174337..175507-

mRNA sequence

>mRNA_8794 ID=mRNA_8794|Name=jgi.p|Nanoce1779_2|604036|organism=Nannochloropsis oceanica|type=mRNA|length=1171bp
CCCTTTTTCTCATCCCGAAGATGGGAGGGGTCTGCCACAGCATAGATGCG
GCGTTAATGACCCTGTTATCTTTATGTGGGGAAGGGGTCGCGCATAAGAA
AGCGTGTTTGATCGGTGTCAAGGAAGAACAGGAACTCAGTCAGGTGTCAA
TCAATGCTATCGACCTGCCAGCAGCTGCCGACCCTTTTCACGCCTTGCCT
CCCCCAAGCTACATGTGCACACAACGAGTTCTGTGTAATGTCCCTGTCCT
TGTCCTGGATTTCACCCAAAAAATGCCGGGAACACAAAGCACATGCGAGC
CTCGGGGTTGGATTTGAAGGCTCTGCAACAGTAACAGACCACTGCTCGCT
TGAACCACCACCCCGGAATAGCAATAGAGCGACAAAGCAGGACGCCTGCA
CTGGTGAAAAGGCACCAGTTCCCGGTCTTTTTTTATTTTACAGAGAAAGA
TTAAACAAAAACAACATTACTTTGTTAGGCTCCCCTAGCACCCTCCAACA
CACCCAACGCACCGACAACCGCACGCACCATCCCAACCGCATTAATGCTC
CACCACGCTAAATTTGCCGGCTTGCTCCTCGACGGGGCCGCGATTGGGAG
CGGAGCGTTTTGCGGGGCTTTGCTTCGGTATGGGGCGATGAAGGTGCAGG
AGCATTACAAATGCGGCCCCTGGGCCATCCCGGTGATCAATGTAGCGGGG
TCGTTCGTGTTGGGGGCGTTGTCTGTGAGTAGCCATGTTGACCCCAGGTT
GAAACTGATGATGGGAGTTGGATTTTGTGGTACGTGCAGAGAGGGTGGGA
GGAATTGAAGGAGGGGGAGCGTGTGTGTGTGGGCATGGAAACCGCCGTTG
ATCCTACCAACCCCCATTTCCTTCCTTCCCTCCTTTCCCTCCCCCTCTCC
ACAGGCTCCCTCACAACTTTCTCCACCTTCTCAGTCGATATCGTCCATCT
GCTACATGCAGGCAAACTGGGCACGGCCATTGGATACGTCCTCTTCAACA
ATGTAGGGGGTGTCCTTGCGGCCGCCTTGGCAATCAAGCTCTTTACTGGG
AAAGGAGGATTTGGAGGAGGGGGGGGGGCTAGGTGGTAAGGGTGGAGGAG
GGATCGGAGGGTTTCTCACCTCCCCGCTTTCTTTCGCTCCCTCGTCCTTG
CCGGCGGCGACGACGACGATG

protein sequence of jgi.p|Nanoce1779_2|604036

>mRNA_8794-protein ID=mRNA_8794-protein|Name=jgi.p|Nanoce1779_2|604036|organism=Nannochloropsis oceanica|type=polypeptide|length=88bp
MLHHAKFAGLLLDGAAIGSGAFCGALLRYGAMKVQEHYKCGPWAIPVINV
AGSFVLGALSVSSHVDPRLKLMMGVGFCGTCREGGRN*

mRNA from alignment at scaffold_28:174337..175507-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8794 ID=mRNA_8794|Name=jgi.p|Nanoce1779_2|604036|organism=Nannochloropsis oceanica|type=mRNA|length=1171bp|location=Sequence derived from alignment at scaffold_28:174337..175507- (Nannochloropsis oceanica)
CCCTTTTTCTCATCCCGAAGATGGGAGGGGTCTGCCACAGCATAGATGCG
GCGTTAATGACCCTGTTATCTTTATGTGGGGAAGGGGTCGCGCATAAGAA
AGCGTGTTTGATCGGTGTCAAGGAAGAACAGGAACTCAGTCAGGTGTCAA
TCAATGCTATCGACCTGCCAGCAGCTGCCGACCCTTTTCACGCCTTGCCT
CCCCCAAGCTACATGTGCACACAACGAGTTCTGTGTAATGTCCCTGTCCT
TGTCCTGGATTTCACCCAAAAAATGCCGGGAACACAAAGCACATGCGAGC
CTCGGGGTTGGATTTGAAGGCTCTGCAACAGTAACAGACCACTGCTCGCT
TGAACCACCACCCCGGAATAGCAATAGAGCGACAAAGCAGGACGCCTGCA
CTGGTGAAAAGGCACCAGTTCCCGGTCTTTTTTTATTTTACAGAGAAAGA
TTAAACAAAAACAACATTACTTTGTTAGGCTCCCCTAGCACCCTCCAACA
CACCCAACGCACCGACAACCGCACGCACCATCCCAACCGCATTAATGCTC
CACCACGCTAAATTTGCCGGCTTGCTCCTCGACGGGGCCGCGATTGGGAG
CGGAGCGTTTTGCGGGGCTTTGCTTCGGTATGGGGCGATGAAGGTGCAGG
AGCATTACAAATGCGGCCCCTGGGCCATCCCGGTGATCAATGTAGCGGGG
TCGTTCGTGTTGGGGGCGTTGTCTGTGAGTAGCCATGTTGACCCCAGGTT
GAAACTGATGATGGGAGTTGGATTTTGTGGTACGTGCAGAGAGGGTGGGA
GGAATTGAAGGAGGGGGAGCGTGTGTGTGTGGGCATGGAAACCGCCGTTG
ATCCTACCAACCCCCATTTCCTTCCTTCCCTCCTTTCCCTCCCCCTCTCC
ACAGGCTCCCTCACAACTTTCTCCACCTTCTCAGTCGATATCGTCCATCT
GCTACATGCAGGCAAACTGGGCACGGCCATTGGATACGTCCTCTTCAACA
ATGTAGGGGGTGTCCTTGCGGCCGCCTTGGCAATCAAGCTCTTTACTGGG
AAAGGAGGATTTGGAGGAGGGGGGGGGGCTAGGTGGTAAGGGTGGAGGAG
GGATCGGAGGGTTTCTCACCTCCCCGCTTTCTTTCGCTCCCTCGTCCTTG
CCGGCGGCGACGACGACGATG

Coding sequence (CDS) from alignment at scaffold_28:174337..175507-

>mRNA_8794 ID=mRNA_8794|Name=jgi.p|Nanoce1779_2|604036|organism=Nannochloropsis oceanica|type=CDS|length=264bp|location=Sequence derived from alignment at scaffold_28:174337..175507- (Nannochloropsis oceanica)
ATGCTCCACCACGCTAAATTTGCCGGCTTGCTCCTCGACGGGGCCGCGAT
TGGGAGCGGAGCGTTTTGCGGGGCTTTGCTTCGGTATGGGGCGATGAAGG
TGCAGGAGCATTACAAATGCGGCCCCTGGGCCATCCCGGTGATCAATGTA
GCGGGGTCGTTCGTGTTGGGGGCGTTGTCTGTGAGTAGCCATGTTGACCC
CAGGTTGAAACTGATGATGGGAGTTGGATTTTGTGGTACGTGCAGAGAGG
GTGGGAGGAATTGA

Synonyms

Publications