jgi.p|Nanoce1779_2|604033, mRNA_8792 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|604033
Unique Name	mRNA_8792
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2160
Alignment location	scaffold_28:170811..172970 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	604119
Track	FilteredModels2
ProteinId	604033

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_28	supercontig	scaffold_28:170811..172970 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|604033	gene_8792	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|604033	mRNA_8792-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8792	CDS_8792	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_28:170811..172970+
coding sequence from alignment at scaffold_28:170811..172970+

mRNA sequence

>mRNA_8792 ID=mRNA_8792|Name=jgi.p|Nanoce1779_2|604033|organism=Nannochloropsis oceanica|type=mRNA|length=2160bp
AGAAGCGGTTGACTGGAATGGAAAGTAGGGTTGAGGAGCTGGTCGTTGGC
GTCCTTGATGCTGTTGTGATGTCTGTGTGAGTGCAGCGGGGTAAATGAAT
GAGCGGGATGGATGCCAAGTGAAAGCCCTAGAACGATCGATGTAGGCGCC
TGGCCGGCTTGTTTTCTGCCGCCTCCTTCTCCGCCAACGCGCACCCTCCC
GCTGCGGCACTGCCCACACCGAGGCAAGGCCCACGCTAGACGTGCAGATG
CCTTCGCGGAGGGTGTTGGCGCTGATGCTCTCCTGCTTCTCCTCCTTATT
CCTTTTTCCTGCTTTGGTGCATGCAATGTCAACAAGGAGCGAAATTTTCT
GAGGCTTCACACAACACTGAGCACAGCCGACGTAAAACAGAATCAGGCCC
GTCAATTGCGAGTTGATGGCACTGAATAAAGTCCCATAGGCTGCCTGCGG
TTGATGTCGTGTCTGGTGGGATGAATGTGCACGCGCATGGTGATGTTGAG
GAGGCACACGCAAAGCATGCGTGTGTCATCAAGGACGAGGGAATTTCAGA
CCGACTCGCAGCAGCCGAGTCCAAAGGAGCACAACAAGCCACAGCCCTCG
AACGATCCCACACGTGCATTGTCAATGGCATGGATTAACATTACTCTGAG
GAGGTGCGGTCATTTTGGTTCACGTAAACAAGTTTGGAAGCGTGCCTTGG
CTGCTCCGGCCTGCTCGAGTGGAATGTTTTTCGGGCGCTCTCGCCGACAC
ATCGCTGTGACACATCGCTGTGACAACGCCAACAACCGACTAGGATTAAT
GAGACGTGCGCCGACGAGACAAGCAAATAAACACACAGTATGGGAGCGTG
AAGTGGACAAAATAAGGGGCAGAAAGAAGGGAAATAGCAGCACACGTGTG
ACACAGGACATATGGAGCAGTCGGTCGTCTCCCGCCTTGACTTGCCTTCT
CCCTCCCCCCTCGAGGACTTCTTGTTCCCGGAAAACCCTCGCATACTCCC
AAAATTGTAGTCTTTCGCCCACAAACATGATATCTACATGTACACACCCC
TTTGCCAGCCACAGTAGCCATTTCGGGCTTTCAGACTGCCAAATAGCCGC
GATCGACACCCGCGCGGTCATTGATCAATGGAACAGGGCAGCTCGGCCCT
TCTCCTCCGGGTCATTTCTCTGGAGTGTACACTCGGGGAGGGCTTTTTAT
GGCGTGTACAGAGGCAGACCAATCATCTTTTCCGAGAGAAATGCCTACCT
CTCCCCTCCTCCCCTCCATCGTCGGGCCTTCCGTCTACATTTATAATCCC
TCGTCGTCCTCTGCGGCGGCGGCAACGCAAGCTGGGTACCCTTCCTTTTT
CTCCACGGGCGGTGGTCTACAAGCCACGCGCCTGGCCGCCTTGAACGCCC
AAACCTGCTTCATTGCCTGCCACCACAACATCTTCCGGCTCGCCCTTACT
TACCCCGCTCCTCCTCCTTTCTCCTCCTCGACTGCCGGGCAGCAGCATCA
ACATCAACAAGTTACGCCTCTGACAAGAATGGCCTTCCAGCGCTCACCCC
TCTTTTCCCCCTCCCCCGTCGTCCTCTTCCTCTTCCAAGCATCACACAAA
CCCACGGAAGTCCAACATCTGTGCTTCATTCCCAACAAGCAGGCCCTCGC
GGCCATTGACAGCGCAGCCACGGTCCACCTCTACTCTCGCCCCTCTTCCA
GTCCGACCTCTACCCCTTCCTCCTTCCCCTCCCCTGCCCCTCCAGGGGAT
TTTCCTCGGTTTGGCTGGGCAGGCTTGGCCTTCGATCCTCATCATCCTTC
TCGCCTTGCCACTTTAAGAACCTACGGTCAAGTCCTCTCCTTTCTCGACG
TCTCTCCCTCCTCCTCCTCCTCCTCCTCCACCTCATTTCACCCGCTCTGG
GACGCCCCCACCGCGCTCGCCTACCTCTCCCCTTCCTCCCTTCACTCCTG
CTCCTTCTCTGTTTTCTCTTGTTCTTCTTCGTTCCTCGCAGTCGCTGAGG
GTTATTTCTTCTCCCTGTGGGATGAGAGGTGTGCTTCCCCCTGTGAGGCG
CGCGAGCAGCCTCTTCCCCTGACGCGGATCGTGACGTTGGAATGGAGGGA
AAGAGAGAAGGATGGGGAGAGGGAGGGGGGGCAGGTGTTGAGGGGAATGG
AAGGAGGGAG

protein sequence of jgi.p|Nanoce1779_2|604033

>mRNA_8792-protein ID=mRNA_8792-protein|Name=jgi.p|Nanoce1779_2|604033|organism=Nannochloropsis oceanica|type=polypeptide|length=274bp
MCTRMVMLRRHTQSMRVSSRTREFQTDSQQPSPKEHNKPQPSNDPTRALS
MAWINITLRRCGHFGSRKQVWKRALAAPACSSGMFFGRSRRHIAVTHRCD
NANNRLGLMRRAPTRQANKHTVWEREVDKIRGRKKGNSSTRVTQDIWSSR
SSPALTCLLPPPSRTSCSRKTLAYSQNCSLSPTNMISTCTHPFASHSSHF
GLSDCQIAAIDTRAVIDQWNRAARPFSSGSFLWSVHSGRAFYGVYRGRPI
IFSERNAYLSPPPLHRRAFRLHL*

mRNA from alignment at scaffold_28:170811..172970+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8792 ID=mRNA_8792|Name=jgi.p|Nanoce1779_2|604033|organism=Nannochloropsis oceanica|type=mRNA|length=2160bp|location=Sequence derived from alignment at scaffold_28:170811..172970+ (Nannochloropsis oceanica)
AGAAGCGGTTGACTGGAATGGAAAGTAGGGTTGAGGAGCTGGTCGTTGGC
GTCCTTGATGCTGTTGTGATGTCTGTGTGAGTGCAGCGGGGTAAATGAAT
GAGCGGGATGGATGCCAAGTGAAAGCCCTAGAACGATCGATGTAGGCGCC
TGGCCGGCTTGTTTTCTGCCGCCTCCTTCTCCGCCAACGCGCACCCTCCC
GCTGCGGCACTGCCCACACCGAGGCAAGGCCCACGCTAGACGTGCAGATG
CCTTCGCGGAGGGTGTTGGCGCTGATGCTCTCCTGCTTCTCCTCCTTATT
CCTTTTTCCTGCTTTGGTGCATGCAATGTCAACAAGGAGCGAAATTTTCT
GAGGCTTCACACAACACTGAGCACAGCCGACGTAAAACAGAATCAGGCCC
GTCAATTGCGAGTTGATGGCACTGAATAAAGTCCCATAGGCTGCCTGCGG
TTGATGTCGTGTCTGGTGGGATGAATGTGCACGCGCATGGTGATGTTGAG
GAGGCACACGCAAAGCATGCGTGTGTCATCAAGGACGAGGGAATTTCAGA
CCGACTCGCAGCAGCCGAGTCCAAAGGAGCACAACAAGCCACAGCCCTCG
AACGATCCCACACGTGCATTGTCAATGGCATGGATTAACATTACTCTGAG
GAGGTGCGGTCATTTTGGTTCACGTAAACAAGTTTGGAAGCGTGCCTTGG
CTGCTCCGGCCTGCTCGAGTGGAATGTTTTTCGGGCGCTCTCGCCGACAC
ATCGCTGTGACACATCGCTGTGACAACGCCAACAACCGACTAGGATTAAT
GAGACGTGCGCCGACGAGACAAGCAAATAAACACACAGTATGGGAGCGTG
AAGTGGACAAAATAAGGGGCAGAAAGAAGGGAAATAGCAGCACACGTGTG
ACACAGGACATATGGAGCAGTCGGTCGTCTCCCGCCTTGACTTGCCTTCT
CCCTCCCCCCTCGAGGACTTCTTGTTCCCGGAAAACCCTCGCATACTCCC
AAAATTGTAGTCTTTCGCCCACAAACATGATATCTACATGTACACACCCC
TTTGCCAGCCACAGTAGCCATTTCGGGCTTTCAGACTGCCAAATAGCCGC
GATCGACACCCGCGCGGTCATTGATCAATGGAACAGGGCAGCTCGGCCCT
TCTCCTCCGGGTCATTTCTCTGGAGTGTACACTCGGGGAGGGCTTTTTAT
GGCGTGTACAGAGGCAGACCAATCATCTTTTCCGAGAGAAATGCCTACCT
CTCCCCTCCTCCCCTCCATCGTCGGGCCTTCCGTCTACATTTATAATCCC
TCGTCGTCCTCTGCGGCGGCGGCAACGCAAGCTGGGTACCCTTCCTTTTT
CTCCACGGGCGGTGGTCTACAAGCCACGCGCCTGGCCGCCTTGAACGCCC
AAACCTGCTTCATTGCCTGCCACCACAACATCTTCCGGCTCGCCCTTACT
TACCCCGCTCCTCCTCCTTTCTCCTCCTCGACTGCCGGGCAGCAGCATCA
ACATCAACAAGTTACGCCTCTGACAAGAATGGCCTTCCAGCGCTCACCCC
TCTTTTCCCCCTCCCCCGTCGTCCTCTTCCTCTTCCAAGCATCACACAAA
CCCACGGAAGTCCAACATCTGTGCTTCATTCCCAACAAGCAGGCCCTCGC
GGCCATTGACAGCGCAGCCACGGTCCACCTCTACTCTCGCCCCTCTTCCA
GTCCGACCTCTACCCCTTCCTCCTTCCCCTCCCCTGCCCCTCCAGGGGAT
TTTCCTCGGTTTGGCTGGGCAGGCTTGGCCTTCGATCCTCATCATCCTTC
TCGCCTTGCCACTTTAAGAACCTACGGTCAAGTCCTCTCCTTTCTCGACG
TCTCTCCCTCCTCCTCCTCCTCCTCCTCCACCTCATTTCACCCGCTCTGG
GACGCCCCCACCGCGCTCGCCTACCTCTCCCCTTCCTCCCTTCACTCCTG
CTCCTTCTCTGTTTTCTCTTGTTCTTCTTCGTTCCTCGCAGTCGCTGAGG
GTTATTTCTTCTCCCTGTGGGATGAGAGGTGTGCTTCCCCCTGTGAGGCG
CGCGAGCAGCCTCTTCCCCTGACGCGGATCGTGACGTTGGAATGGAGGGA
AAGAGAGAAGGATGGGGAGAGGGAGGGGGGGCAGGTGTTGAGGGGAATGG
AAGGAGGGAG

Coding sequence (CDS) from alignment at scaffold_28:170811..172970+

>mRNA_8792 ID=mRNA_8792|Name=jgi.p|Nanoce1779_2|604033|organism=Nannochloropsis oceanica|type=CDS|length=822bp|location=Sequence derived from alignment at scaffold_28:170811..172970+ (Nannochloropsis oceanica)
ATGTGCACGCGCATGGTGATGTTGAGGAGGCACACGCAAAGCATGCGTGT
GTCATCAAGGACGAGGGAATTTCAGACCGACTCGCAGCAGCCGAGTCCAA
AGGAGCACAACAAGCCACAGCCCTCGAACGATCCCACACGTGCATTGTCA
ATGGCATGGATTAACATTACTCTGAGGAGGTGCGGTCATTTTGGTTCACG
TAAACAAGTTTGGAAGCGTGCCTTGGCTGCTCCGGCCTGCTCGAGTGGAA
TGTTTTTCGGGCGCTCTCGCCGACACATCGCTGTGACACATCGCTGTGAC
AACGCCAACAACCGACTAGGATTAATGAGACGTGCGCCGACGAGACAAGC
AAATAAACACACAGTATGGGAGCGTGAAGTGGACAAAATAAGGGGCAGAA
AGAAGGGAAATAGCAGCACACGTGTGACACAGGACATATGGAGCAGTCGG
TCGTCTCCCGCCTTGACTTGCCTTCTCCCTCCCCCCTCGAGGACTTCTTG
TTCCCGGAAAACCCTCGCATACTCCCAAAATTGTAGTCTTTCGCCCACAA
ACATGATATCTACATGTACACACCCCTTTGCCAGCCACAGTAGCCATTTC
GGGCTTTCAGACTGCCAAATAGCCGCGATCGACACCCGCGCGGTCATTGA
TCAATGGAACAGGGCAGCTCGGCCCTTCTCCTCCGGGTCATTTCTCTGGA
GTGTACACTCGGGGAGGGCTTTTTATGGCGTGTACAGAGGCAGACCAATC
ATCTTTTCCGAGAGAAATGCCTACCTCTCCCCTCCTCCCCTCCATCGTCG
GGCCTTCCGTCTACATTTATAA

Synonyms

Publications