jgi.p|Nanoce1779_2|604031, mRNA_8790 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|604031
Unique NamemRNA_8790
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length698
Alignment locationscaffold_28:166774..167471 +

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Properties
Property NameValue
TranscriptId604117
TrackFilteredModels2
ProteinId604031
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_28supercontigscaffold_28:166774..167471 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|604031gene_8790Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|604031mRNA_8790-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8790CDS_8790Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8790 ID=mRNA_8790|Name=jgi.p|Nanoce1779_2|604031|organism=Nannochloropsis oceanica|type=mRNA|length=698bp
TGCCCCTTACTTCTTTATGTTCAGATTCTCCCTCCTTCCCTCCCTCGACT
CGTGTAGTGTAATTTTATAGTACCGTGCATGTCTACTCAACATAATTCAC
TCATCCCTCCCTCCCTCTTCTCACGTCTATCGGTCTGTATGTACATTTTT
TCCCCACTCCTGCTTCTCCTCCTCCTCCTCCTCCTAATTCTTCTCCATTC
TCCTTTGCTCTCCATCTTCCCCTCTTTGTGTCTTACACTCGAGCGATTAT
TTTTTGAAAAGTTGGCAGTTGGCCAAAAGTTGCGCGCTCCGTTCTACCTC
TCCCTCCCTCCTCCCTCCTTCTCGCTTTCTCTTCTTCTCCTTCTCAGCAT
CTCTCCTCTTCTCTTTGGAATGGATGGAACCCTTCCCTCCTTTCCCTTCC
CTTCCTCCCTCACTCCTTTGATCCTTAATCTTCAATTACATGTCGTCGTT
CCATGCCCACCTGTCCCTCCTCTCCCCTCCCTCTCTCCCTCCCTCCCTCC
CCCCCCCCTCGCAAGCCCCTCCTTGCAACAAGGAAAGAGGCACAGAAGAT
GAAAGGAAAGGGGGTAGGGATGGAATGAGGGAGGGGAGCATCACAGGAAT
TATTTACATCATTAACACTGAAAGGTGCTACGGTCAGACACACAGGAAAT
CATCACCAAGGCTGTTTCTCGTCCTCCATCCCTCCCTCCATCCCTCCC
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protein sequence of jgi.p|Nanoce1779_2|604031

>mRNA_8790-protein ID=mRNA_8790-protein|Name=jgi.p|Nanoce1779_2|604031|organism=Nannochloropsis oceanica|type=polypeptide|length=158bp
MSTQHNSLIPPSLFSRLSVCMYIFSPLLLLLLLLLLILLHSPLLSIFPSL
CLTLERLFFEKLAVGQKLRAPFYLSLPPPSFSLSLLLLLSISPLLFGMDG
TLPSFPFPSSLTPLILNLQLHVVVPCPPVPPLPSLSPSLPPPPLASPSLQ
QGKRHRR*
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mRNA from alignment at scaffold_28:166774..167471+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8790 ID=mRNA_8790|Name=jgi.p|Nanoce1779_2|604031|organism=Nannochloropsis oceanica|type=mRNA|length=698bp|location=Sequence derived from alignment at scaffold_28:166774..167471+ (Nannochloropsis oceanica)
TGCCCCTTACTTCTTTATGTTCAGATTCTCCCTCCTTCCCTCCCTCGACT
CGTGTAGTGTAATTTTATAGTACCGTGCATGTCTACTCAACATAATTCAC
TCATCCCTCCCTCCCTCTTCTCACGTCTATCGGTCTGTATGTACATTTTT
TCCCCACTCCTGCTTCTCCTCCTCCTCCTCCTCCTAATTCTTCTCCATTC
TCCTTTGCTCTCCATCTTCCCCTCTTTGTGTCTTACACTCGAGCGATTAT
TTTTTGAAAAGTTGGCAGTTGGCCAAAAGTTGCGCGCTCCGTTCTACCTC
TCCCTCCCTCCTCCCTCCTTCTCGCTTTCTCTTCTTCTCCTTCTCAGCAT
CTCTCCTCTTCTCTTTGGAATGGATGGAACCCTTCCCTCCTTTCCCTTCC
CTTCCTCCCTCACTCCTTTGATCCTTAATCTTCAATTACATGTCGTCGTT
CCATGCCCACCTGTCCCTCCTCTCCCCTCCCTCTCTCCCTCCCTCCCTCC
CCCCCCCCTCGCAAGCCCCTCCTTGCAACAAGGAAAGAGGCACAGAAGAT
GAAAGGAAAGGGGGTAGGGATGGAATGAGGGAGGGGAGCATCACAGGAAT
TATTTACATCATTAACACTGAAAGGTGCTACGGTCAGACACACAGGAAAT
CATCACCAAGGCTGTTTCTCGTCCTCCATCCCTCCCTCCATCCCTCCC
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Coding sequence (CDS) from alignment at scaffold_28:166774..167471+

>mRNA_8790 ID=mRNA_8790|Name=jgi.p|Nanoce1779_2|604031|organism=Nannochloropsis oceanica|type=CDS|length=474bp|location=Sequence derived from alignment at scaffold_28:166774..167471+ (Nannochloropsis oceanica)
ATGTCTACTCAACATAATTCACTCATCCCTCCCTCCCTCTTCTCACGTCT
ATCGGTCTGTATGTACATTTTTTCCCCACTCCTGCTTCTCCTCCTCCTCC
TCCTCCTAATTCTTCTCCATTCTCCTTTGCTCTCCATCTTCCCCTCTTTG
TGTCTTACACTCGAGCGATTATTTTTTGAAAAGTTGGCAGTTGGCCAAAA
GTTGCGCGCTCCGTTCTACCTCTCCCTCCCTCCTCCCTCCTTCTCGCTTT
CTCTTCTTCTCCTTCTCAGCATCTCTCCTCTTCTCTTTGGAATGGATGGA
ACCCTTCCCTCCTTTCCCTTCCCTTCCTCCCTCACTCCTTTGATCCTTAA
TCTTCAATTACATGTCGTCGTTCCATGCCCACCTGTCCCTCCTCTCCCCT
CCCTCTCTCCCTCCCTCCCTCCCCCCCCCCTCGCAAGCCCCTCCTTGCAA
CAAGGAAAGAGGCACAGAAGATGA
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Synonyms
Publications