jgi.p|Nanoce1779_2|604029, mRNA_8789 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|604029
Unique Name	mRNA_8789
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	897
Alignment location	scaffold_28:164849..166475 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	604115
Track	FilteredModels2
ProteinId	604029

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_28	supercontig	scaffold_28:164849..166475 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|604029	gene_8789	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|604029	mRNA_8789-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8789	CDS_8789	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_28:164849..166475+
coding sequence from alignment at scaffold_28:164849..166475+

mRNA sequence

>mRNA_8789 ID=mRNA_8789|Name=jgi.p|Nanoce1779_2|604029|organism=Nannochloropsis oceanica|type=mRNA|length=897bp
CAGATCATAAAACACCGTCAACAGGCAGCAAAGAATGCAGCTGTCGTCCT
TCCCTGCCTCCTATATCTTCCTCCTCCTGACCACCGCAGCGCTTCCCGTT
GTCCACTCCTTCATCTTGCCCTCCTCCTCCTCCTCCTCCTCGATTTCCTC
GGGCCTACCGCGCCCTCATCATCTCCATGTACAGCACGGCCCGCCCCCTT
TGTGGATGGGCGGGAAATGGGTCAAAGACCCCAGTATTGCACAAGGCATC
GCGGATATGGTAAAGAATTTCCAGCAGAAGAAGCACGCACAGACGGAGAC
GGTGGACCGGTACTTGCAGGACGGCATAGAGGGAATCAAGCTTCTCGAAC
CCTCCCTCGCTCTAGCCGCCTTCGAGACCGCCTTGAAAATGGACAACGAA
ACTGGCTTGTTGTGGCACCACGGAGCCATGCTCTACTATCTCGACAGACC
CAAAGAAGCCGTAGAGCAGCTGGACAAGGCCTCTGCCCGTTACGAGGAGC
AGTTCGAGCAGCCGGCTACAGAAGAAGGCATCTGGCGCGCCGCCGCCTTA
CTAAAACTTCACGGTGCCGAGGAAGGTCAACGGCGACTGTCCTCCCTCCC
GCCATCCCCCTTTGGGGAAGAAAAACGGCAGCTCATGGGACTCGTGGCCG
GATTGTTCAAAGGCGAGGTGGATGAAGAGACAGTCCTGGCTGTGTTGGAG
GGCGCAAGGGCCAATCCCTATGGGAACTACGCATTGTACGGTAACTTTTA
CCTGGGCCTGTGGCATGACGCGTCGGGGAGGCCAGGAGAGGCGGTGGCAG
CGATGGGGCGGGCCATGGAGGCTCCCAAGGGGAGGCAGGACGATGTCATG
TATGCCTACCCACGCCTCCACCTCAAGTGTGCGAAACATGGTTGAGG

protein sequence of jgi.p|Nanoce1779_2|604029

>mRNA_8789-protein ID=mRNA_8789-protein|Name=jgi.p|Nanoce1779_2|604029|organism=Nannochloropsis oceanica|type=polypeptide|length=287bp
MQLSSFPASYIFLLLTTAALPVVHSFILPSSSSSSSISSGLPRPHHLHVQ
HGPPPLWMGGKWVKDPSIAQGIADMVKNFQQKKHAQTETVDRYLQDGIEG
IKLLEPSLALAAFETALKMDNETGLLWHHGAMLYYLDRPKEAVEQLDKAS
ARYEEQFEQPATEEGIWRAAALLKLHGAEEGQRRLSSLPPSPFGEEKRQL
MGLVAGLFKGEVDEETVLAVLEGARANPYGNYALYGNFYLGLWHDASGRP
GEAVAAMGRAMEAPKGRQDDVMYAYPRLHLKCAKHG*

mRNA from alignment at scaffold_28:164849..166475+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8789 ID=mRNA_8789|Name=jgi.p|Nanoce1779_2|604029|organism=Nannochloropsis oceanica|type=mRNA|length=1627bp|location=Sequence derived from alignment at scaffold_28:164849..166475+ (Nannochloropsis oceanica)
CAGATCATAAAACACCGTCAACAGGCAGCAAAGAATGCAGCTGTCGTCCT
TCCCTGCCTCCTATATCTTCCTCCTCCTGACCACCGCAGCGCTTCCCGTT
GTCCACTCCTTCATCTTGCCCTCCTCCTCCTCCTCCTCCTCGATTTCCTC
GGGCCTACCGCGCCCTCATCATCTCCATGTACAGCACGGCCCGCCCCCTT
TGTGGATGGGCGGGAAATGGGTCAAAGACCCCAGTATTGCACAAGGTACG
AGGGGTTGGATGGAGGGAGGGCAGGGGTCACTAACTCCGCTTATCACTTG
TGGTTCAGACAATATCAATGCGCATCAGTCTCTGCACCTGCACGCAAATA
GGCATCGCGGATATGGTAAAGAATTTCCAGCAGAAGAAGCACGCACAGAC
GGAGACGGTGGACCGGTACTTGCAGGTGAGAGGGAGGGAGGGAGGGAGGG
AGAGAGCGTGAGAAGGAGGGGGGGAGGGAGGAAGGAAGGACGGAGAGAAA
AGTAAGGAGGCGAGGAATAAGATGCAGAACAGGATTCTCGTCATACTGGA
AAATGGATGGATACGTGAGATGCGTGACATCACTGCTGAGATTTTTCATT
TCGACTTTAACTCCCTTTCTACAAGACCGCTGACCAGGAACCCCTCCCTC
CCTCCCTGACTCATTCCATTTCTCCAAAGGACGGCATAGAGGGAATCAAG
CTTCTCGAACCCTCCCTCGCTCTAGCCGCCTTCGAGACCGCCTTGAAAAT
GGACAACGAAACTGGCTTGTTGTGGCACCACGGAGCCATGCTCTACTATC
TCGACAGACCCAAAGAAGCCGTAGAGCAGCTGGACAAGTACGTTTGGAGT
CCACCCTCCCTCCCTCCCTTCCTCCCTCCTCCACTCTCCCCTCCTTTTTC
CCTTTCTCTCCCTCTGTTTCTCCCTTAAAGCCTTTTGACTATCCACACCG
AGAGTCATGGGAGCGTATAGGTCCAGAAGAGGGCACGGGACGAGGACCAG
CGCCCTCCCTCCCCCCCTCCAGTCTTCTCACCTCCCTCCCTTCCTCCATT
CCTCCCTTCCCTAGGGCCTCTGCCCGTTACGAGGAGCAGTTCGAGCAGCC
GGCTACAGAAGAAGGCATCTGGCGCGCCGCCGCCTTACTAAAACTTCACG
GTGCCGAGGAAGGTCAACGGCGACTGTCCTCCCTCCCGCCATCCCCCTTT
GGGGAAGAAAAACGGCAGCTCATGGGACTCGTGGCCGGATTGTTCAAAGG
CGAGGTGGATGAAGAGACAGTCCTGGCTGTGTTGGAGGGCGCAAGGGTGA
GGAGGAAGGGAGGGAGGGAGGGGGGAAGGGAGGGAGGGAGGGAGGGAATG
AAAGGAAGAAACACGGACTTCGAACAAAGAAAAAGCCGCTTACGTACCCC
CCTCCCTCCCTCCCTCCCTCCCTCCCTCCTCCCCTCCAGGCCAATCCCTA
TGGGAACTACGCATTGTACGGTAACTTTTACCTGGGCCTGTGGCATGACG
CGTCGGGGAGGCCAGGAGAGGCGGTGGCAGCGATGGGGCGGGCCATGGAG
GCTCCCAAGGGGAGGCAGGACGATGTCATGTATGCCTACCCACGCCTCCA
CCTCAAGTGTGCGAAACATGGTTGAGG

Coding sequence (CDS) from alignment at scaffold_28:164849..166475+

>mRNA_8789 ID=mRNA_8789|Name=jgi.p|Nanoce1779_2|604029|organism=Nannochloropsis oceanica|type=CDS|length=4305bp|location=Sequence derived from alignment at scaffold_28:164849..166475+ (Nannochloropsis oceanica)
ATGCAGCTGTCGTCCTTCCCTGCCTCCTATATCTTCCTCCTCCTGACCAC
CGCAGCGCTTCCCGTTGTCCACTCCTTCATCTTGCCCTCCTCCTCCTCCT
CCTCCTCGATTTCCTCGGGCCTACCGCGCCCTCATCATCTCCATGTACAG
CACGGCCCGCCCCCTTTGTGGATGGGCGGGAAATGGGTCAAAGACCCCAG
TATTGCACAAGGCATCGCGGATATGGTAAAGAATTTCCAGCAGAAGAAGC
ACGCACAGACGGAGACGGTGGACCGGTACTTGCAGGACGGCATAGAGGGA
ATCAAGCTTCTCGAACCCTCCCTCGCTCTAGCCGCCTTCGAGACCGCCTT
GAAAATGGACAACGAAACTGGCTTGTTGTGGCACCACGGAGCCATGCTCT
ACTATCTCGACAGACCCAAAGAAGCCGTAGAGCAGCTGGACAAGGCCTCT
GCCCGTTACGAGGAGCAGTTCGAGCAGCCGGCTACAGAAGAAGGCATCTG
GCGCGCCGCCGCCTTACTAAAACTTCACGGTGCCGAGGAAGGTCAACGGC
GACTGTCCTCCCTCCCGCCATCCCCCTTTGGGGAAGAAAAACGGCAGCTC
ATGGGACTCGTGGCCGGATTGTTCAAAGGCGAGGTGGATGAAGAGACAGT
CCTGGCTGTGTTGGAGGGCGCAAGGGCCAATCCCTATGGGAACTACGCAT
TGTACGGTAACTTTTACCTGGGCCTGTGGCATGACGCGTCGGGGAGGCCA
GGAGAGGCGGTGGCAGCGATGGGGCGGGCCATGGAGGCTCCCAAGGGGAG
GCAGGACGATGTCATGTATGCCTACCCACGCCTCCACCTCAAGTGTGCGA
AACATGGTTGAATGCAGCTGTCGTCCTTCCCTGCCTCCTATATCTTCCTC
CTCCTGACCACCGCAGCGCTTCCCGTTGTCCACTCCTTCATCTTGCCCTC
CTCCTCCTCCTCCTCCTCGATTTCCTCGGGCCTACCGCGCCCTCATCATC
TCCATGTACAGCACGGCCCGCCCCCTTTGTGGATGGGCGGGAAATGGGTC
AAAGACCCCAGTATTGCACAAGGCATCGCGGATATGGTAAAGAATTTCCA
GCAGAAGAAGCACGCACAGACGGAGACGGTGGACCGGTACTTGCAGGACG
GCATAGAGGGAATCAAGCTTCTCGAACCCTCCCTCGCTCTAGCCGCCTTC
GAGACCGCCTTGAAAATGGACAACGAAACTGGCTTGTTGTGGCACCACGG
AGCCATGCTCTACTATCTCGACAGACCCAAAGAAGCCGTAGAGCAGCTGG
ACAAGGCCTCTGCCCGTTACGAGGAGCAGTTCGAGCAGCCGGCTACAGAA
GAAGGCATCTGGCGCGCCGCCGCCTTACTAAAACTTCACGGTGCCGAGGA
AGGTCAACGGCGACTGTCCTCCCTCCCGCCATCCCCCTTTGGGGAAGAAA
AACGGCAGCTCATGGGACTCGTGGCCGGATTGTTCAAAGGCGAGGTGGAT
GAAGAGACAGTCCTGGCTGTGTTGGAGGGCGCAAGGGCCAATCCCTATGG
GAACTACGCATTGTACGGTAACTTTTACCTGGGCCTGTGGCATGACGCGT
CGGGGAGGCCAGGAGAGGCGGTGGCAGCGATGGGGCGGGCCATGGAGGCT
CCCAAGGGGAGGCAGGACGATGTCATGTATGCCTACCCACGCCTCCACCT
CAAGTGTGCGAAACATGGTTGAATGCAGCTGTCGTCCTTCCCTGCCTCCT
ATATCTTCCTCCTCCTGACCACCGCAGCGCTTCCCGTTGTCCACTCCTTC
ATCTTGCCCTCCTCCTCCTCCTCCTCCTCGATTTCCTCGGGCCTACCGCG
CCCTCATCATCTCCATGTACAGCACGGCCCGCCCCCTTTGTGGATGGGCG
GGAAATGGGTCAAAGACCCCAGTATTGCACAAGGCATCGCGGATATGGTA
AAGAATTTCCAGCAGAAGAAGCACGCACAGACGGAGACGGTGGACCGGTA
CTTGCAGGACGGCATAGAGGGAATCAAGCTTCTCGAACCCTCCCTCGCTC
TAGCCGCCTTCGAGACCGCCTTGAAAATGGACAACGAAACTGGCTTGTTG
TGGCACCACGGAGCCATGCTCTACTATCTCGACAGACCCAAAGAAGCCGT
AGAGCAGCTGGACAAGGCCTCTGCCCGTTACGAGGAGCAGTTCGAGCAGC
CGGCTACAGAAGAAGGCATCTGGCGCGCCGCCGCCTTACTAAAACTTCAC
GGTGCCGAGGAAGGTCAACGGCGACTGTCCTCCCTCCCGCCATCCCCCTT
TGGGGAAGAAAAACGGCAGCTCATGGGACTCGTGGCCGGATTGTTCAAAG
GCGAGGTGGATGAAGAGACAGTCCTGGCTGTGTTGGAGGGCGCAAGGGCC
AATCCCTATGGGAACTACGCATTGTACGGTAACTTTTACCTGGGCCTGTG
GCATGACGCGTCGGGGAGGCCAGGAGAGGCGGTGGCAGCGATGGGGCGGG
CCATGGAGGCTCCCAAGGGGAGGCAGGACGATGTCATGTATGCCTACCCA
CGCCTCCACCTCAAGTGTGCGAAACATGGTTGAATGCAGCTGTCGTCCTT
CCCTGCCTCCTATATCTTCCTCCTCCTGACCACCGCAGCGCTTCCCGTTG
TCCACTCCTTCATCTTGCCCTCCTCCTCCTCCTCCTCCTCGATTTCCTCG
GGCCTACCGCGCCCTCATCATCTCCATGTACAGCACGGCCCGCCCCCTTT
GTGGATGGGCGGGAAATGGGTCAAAGACCCCAGTATTGCACAAGGCATCG
CGGATATGGTAAAGAATTTCCAGCAGAAGAAGCACGCACAGACGGAGACG
GTGGACCGGTACTTGCAGGACGGCATAGAGGGAATCAAGCTTCTCGAACC
CTCCCTCGCTCTAGCCGCCTTCGAGACCGCCTTGAAAATGGACAACGAAA
CTGGCTTGTTGTGGCACCACGGAGCCATGCTCTACTATCTCGACAGACCC
AAAGAAGCCGTAGAGCAGCTGGACAAGGCCTCTGCCCGTTACGAGGAGCA
GTTCGAGCAGCCGGCTACAGAAGAAGGCATCTGGCGCGCCGCCGCCTTAC
TAAAACTTCACGGTGCCGAGGAAGGTCAACGGCGACTGTCCTCCCTCCCG
CCATCCCCCTTTGGGGAAGAAAAACGGCAGCTCATGGGACTCGTGGCCGG
ATTGTTCAAAGGCGAGGTGGATGAAGAGACAGTCCTGGCTGTGTTGGAGG
GCGCAAGGGCCAATCCCTATGGGAACTACGCATTGTACGGTAACTTTTAC
CTGGGCCTGTGGCATGACGCGTCGGGGAGGCCAGGAGAGGCGGTGGCAGC
GATGGGGCGGGCCATGGAGGCTCCCAAGGGGAGGCAGGACGATGTCATGT
ATGCCTACCCACGCCTCCACCTCAAGTGTGCGAAACATGGTTGAATGCAG
CTGTCGTCCTTCCCTGCCTCCTATATCTTCCTCCTCCTGACCACCGCAGC
GCTTCCCGTTGTCCACTCCTTCATCTTGCCCTCCTCCTCCTCCTCCTCCT
CGATTTCCTCGGGCCTACCGCGCCCTCATCATCTCCATGTACAGCACGGC
CCGCCCCCTTTGTGGATGGGCGGGAAATGGGTCAAAGACCCCAGTATTGC
ACAAGGCATCGCGGATATGGTAAAGAATTTCCAGCAGAAGAAGCACGCAC
AGACGGAGACGGTGGACCGGTACTTGCAGGACGGCATAGAGGGAATCAAG
CTTCTCGAACCCTCCCTCGCTCTAGCCGCCTTCGAGACCGCCTTGAAAAT
GGACAACGAAACTGGCTTGTTGTGGCACCACGGAGCCATGCTCTACTATC
TCGACAGACCCAAAGAAGCCGTAGAGCAGCTGGACAAGGCCTCTGCCCGT
TACGAGGAGCAGTTCGAGCAGCCGGCTACAGAAGAAGGCATCTGGCGCGC
CGCCGCCTTACTAAAACTTCACGGTGCCGAGGAAGGTCAACGGCGACTGT
CCTCCCTCCCGCCATCCCCCTTTGGGGAAGAAAAACGGCAGCTCATGGGA
CTCGTGGCCGGATTGTTCAAAGGCGAGGTGGATGAAGAGACAGTCCTGGC
TGTGTTGGAGGGCGCAAGGGCCAATCCCTATGGGAACTACGCATTGTACG
GTAACTTTTACCTGGGCCTGTGGCATGACGCGTCGGGGAGGCCAGGAGAG
GCGGTGGCAGCGATGGGGCGGGCCATGGAGGCTCCCAAGGGGAGGCAGGA
CGATGTCATGTATGCCTACCCACGCCTCCACCTCAAGTGTGCGAAACATG
GTTGA

Synonyms

Publications