jgi.p|Nanoce1779_2|219249, mRNA_8778 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|219249
Unique NamemRNA_8778
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length953
Alignment locationscaffold_28:123379..124331 -

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Properties
Property NameValue
TranscriptId219335
TrackFilteredModels2
ProteinId219249
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_28supercontigscaffold_28:123379..124331 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|219249gene_8778Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|219249mRNA_8778-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8778CDS_8778Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8778 ID=mRNA_8778|Name=jgi.p|Nanoce1779_2|219249|organism=Nannochloropsis oceanica|type=mRNA|length=953bp
AAAGAGGTAAGGGAGGGGGAAATGGGAAGGGGAAGGGGTAAATAAGTTTT
TAAAAAATGTAGGGGGTAGGAGAAAAATCATGAACACACAAAAATCACTC
ATTTCACCACATTTATGTATACCTCGAAAGCCGACGCCAGGCTTCGATGT
CCGTCCTCCTGCGTGCGGGCCACCCCCGGGCCGAGAGGAGAGGAAGGATG
GAGGACAAAGGGGACGGGGAGCAATGAGGGGAGGGGGTGCGACGAAGGAG
GAGGAGTGGTGGAGGATCGCAATATTTTCTTCCTGCTGCTGCTGCTGCTG
CTGCTGCTGCTACTACTACTACTACTGCTGCAACTACTGCCACGACGCAG
GCGTAGGCGAGTTAGGAGGCCTCCTTCAGTGGTGGGGGTGGAGGCGACGA
GGAGGGAAATGACTAGCAGGGTGGCTGTCTGGTATTGGACCGTCCTTCTC
CTTCTTCTGGTTGCTGTTGCTGCACCTGCTGCGGTAGGTAGATCTCCTCC
TGGTGGCGGTCTTGTCATATTCCGCTCTTGTTCTGCCTCGTTCAGGTGGA
TCAAGGCCTGGGGCGTGGGACTGCAAAGCGCGGGAAGTAGCAGGAGCCAG
CAGGTGGGTCCCCGCACAGTGGTTTACCTGGAGTCACGCTGCTCAATAAT
CTCGATTGCCTGCAATTATGGCTAAGGGGGCGTGAGTGTATGTCTAATGA
GGTCCCGGTGGAATACATAGTAAAGTGGTATGGCCGGCCCCTTGGCTCGA
TTATCGCCTTCTGCATTACCATTCGAATAACGCGTTGTTGGGCGCTGGCA
GCAGCGGTGTGTGTCGTATCGGCCACAAACATGCCCCCCTGCTCGTCGGC
ACACCACACTCGCGAGCTTTGCCTTTCCAGTTCTTTGAACTGTCGGTTGG
GAGCACGTAAAATGAAGGAGAACAAAAAAGCTAAGGGGGGCGGCGTGGCG
AAG
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protein sequence of jgi.p|Nanoce1779_2|219249

>mRNA_8778-protein ID=mRNA_8778-protein|Name=jgi.p|Nanoce1779_2|219249|organism=Nannochloropsis oceanica|type=polypeptide|length=187bp
MYTSKADARLRCPSSCVRATPGPRGEEGWRTKGTGSNEGRGCDEGGGVVE
DRNIFFLLLLLLLLLLLLLLLLQLLPRRRRRRVRRPPSVVGVEATRREMT
SRVAVWYWTVLLLLLVAVAAPAAVGRSPPGGGLVIFRSCSASFRWIKAWG
VGLQSAGSSRSQQVGPRTVVYLESRCSIISIACNYG*
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mRNA from alignment at scaffold_28:123379..124331-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8778 ID=mRNA_8778|Name=jgi.p|Nanoce1779_2|219249|organism=Nannochloropsis oceanica|type=mRNA|length=953bp|location=Sequence derived from alignment at scaffold_28:123379..124331- (Nannochloropsis oceanica)
AAAGAGGTAAGGGAGGGGGAAATGGGAAGGGGAAGGGGTAAATAAGTTTT
TAAAAAATGTAGGGGGTAGGAGAAAAATCATGAACACACAAAAATCACTC
ATTTCACCACATTTATGTATACCTCGAAAGCCGACGCCAGGCTTCGATGT
CCGTCCTCCTGCGTGCGGGCCACCCCCGGGCCGAGAGGAGAGGAAGGATG
GAGGACAAAGGGGACGGGGAGCAATGAGGGGAGGGGGTGCGACGAAGGAG
GAGGAGTGGTGGAGGATCGCAATATTTTCTTCCTGCTGCTGCTGCTGCTG
CTGCTGCTGCTACTACTACTACTACTGCTGCAACTACTGCCACGACGCAG
GCGTAGGCGAGTTAGGAGGCCTCCTTCAGTGGTGGGGGTGGAGGCGACGA
GGAGGGAAATGACTAGCAGGGTGGCTGTCTGGTATTGGACCGTCCTTCTC
CTTCTTCTGGTTGCTGTTGCTGCACCTGCTGCGGTAGGTAGATCTCCTCC
TGGTGGCGGTCTTGTCATATTCCGCTCTTGTTCTGCCTCGTTCAGGTGGA
TCAAGGCCTGGGGCGTGGGACTGCAAAGCGCGGGAAGTAGCAGGAGCCAG
CAGGTGGGTCCCCGCACAGTGGTTTACCTGGAGTCACGCTGCTCAATAAT
CTCGATTGCCTGCAATTATGGCTAAGGGGGCGTGAGTGTATGTCTAATGA
GGTCCCGGTGGAATACATAGTAAAGTGGTATGGCCGGCCCCTTGGCTCGA
TTATCGCCTTCTGCATTACCATTCGAATAACGCGTTGTTGGGCGCTGGCA
GCAGCGGTGTGTGTCGTATCGGCCACAAACATGCCCCCCTGCTCGTCGGC
ACACCACACTCGCGAGCTTTGCCTTTCCAGTTCTTTGAACTGTCGGTTGG
GAGCACGTAAAATGAAGGAGAACAAAAAAGCTAAGGGGGGCGGCGTGGCG
AAG
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Coding sequence (CDS) from alignment at scaffold_28:123379..124331-

>mRNA_8778 ID=mRNA_8778|Name=jgi.p|Nanoce1779_2|219249|organism=Nannochloropsis oceanica|type=CDS|length=561bp|location=Sequence derived from alignment at scaffold_28:123379..124331- (Nannochloropsis oceanica)
ATGTATACCTCGAAAGCCGACGCCAGGCTTCGATGTCCGTCCTCCTGCGT
GCGGGCCACCCCCGGGCCGAGAGGAGAGGAAGGATGGAGGACAAAGGGGA
CGGGGAGCAATGAGGGGAGGGGGTGCGACGAAGGAGGAGGAGTGGTGGAG
GATCGCAATATTTTCTTCCTGCTGCTGCTGCTGCTGCTGCTGCTGCTACT
ACTACTACTACTGCTGCAACTACTGCCACGACGCAGGCGTAGGCGAGTTA
GGAGGCCTCCTTCAGTGGTGGGGGTGGAGGCGACGAGGAGGGAAATGACT
AGCAGGGTGGCTGTCTGGTATTGGACCGTCCTTCTCCTTCTTCTGGTTGC
TGTTGCTGCACCTGCTGCGGTAGGTAGATCTCCTCCTGGTGGCGGTCTTG
TCATATTCCGCTCTTGTTCTGCCTCGTTCAGGTGGATCAAGGCCTGGGGC
GTGGGACTGCAAAGCGCGGGAAGTAGCAGGAGCCAGCAGGTGGGTCCCCG
CACAGTGGTTTACCTGGAGTCACGCTGCTCAATAATCTCGATTGCCTGCA
ATTATGGCTAA
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Synonyms
Publications