jgi.p|Nanoce1779_2|603955, mRNA_8774 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|603955
Unique NamemRNA_8774
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length629
Alignment locationscaffold_28:103705..104333 +

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Properties
Property NameValue
TranscriptId604041
TrackFilteredModels2
ProteinId603955
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_28supercontigscaffold_28:103705..104333 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|603955gene_8774Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|603955mRNA_8774-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8774CDS_8774Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8774 ID=mRNA_8774|Name=jgi.p|Nanoce1779_2|603955|organism=Nannochloropsis oceanica|type=mRNA|length=629bp
GGCCGACCCCTACACGCTTCAGGTGAAACAGATTGGTGCCGAGGAGCTTC
ACAACCCCGAGGAGAAGGAGGGGGAGGAGGAGGGAGGGATGGAGGTCCTC
TTCCGTCCTCTCTGCCTCCTTGATTTCCCCGCCTCCGGCAGCCCTTGCTG
TTGCTGCTGCCGCTACTGTTGGCCGTGCTCGTGCTCCTATTGTCGTCTGC
TGCTCCTCGAAGGGTGGGAGGGTGTGGAGGAGGCGGGCAAGGTGCCGAAG
GAGGGAGTGAAGGAGGAGGTAGGTCGAGACGTGGGGGTGGACGAGAACGC
CCAAACCGGTGTGAGGTGAGCTAAGGTCTTGGAGACGGAGGGAGGCGAGT
GATGGATGGAGGGAGGGGTCGAGGTAGGCGTACCGGAGATGGGTGAGCGA
GCCTAGGAGGGCGAGGAGGGTGATGGGGAGGGAAGGAGGAAAGGAGGGAA
GGAAGGAAAAGGAGGAGGGAGGAAGTAGAGCTTGGATGGCTGTGGTGACT
AGATGACTGTCACTGCTGCTGCTGCTGCTGCTGTTCTTATTGTTGTTGTT
ATTGTTGTTGTTGCTGCTGCTGCTGCTGCTGCCGCCGGGAAGAAGAGGAG
TGACCGCGGCACGACCCGAAGAAGCGGGA
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protein sequence of jgi.p|Nanoce1779_2|603955

>mRNA_8774-protein ID=mRNA_8774-protein|Name=jgi.p|Nanoce1779_2|603955|organism=Nannochloropsis oceanica|type=polypeptide|length=77bp
MEVLFRPLCLLDFPASGSPCCCCCRYCWPCSCSYCRLLLLEGWEGVEEAG
KVPKEGVKEEVGRDVGVDENAQTGVR*
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mRNA from alignment at scaffold_28:103705..104333+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8774 ID=mRNA_8774|Name=jgi.p|Nanoce1779_2|603955|organism=Nannochloropsis oceanica|type=mRNA|length=629bp|location=Sequence derived from alignment at scaffold_28:103705..104333+ (Nannochloropsis oceanica)
GGCCGACCCCTACACGCTTCAGGTGAAACAGATTGGTGCCGAGGAGCTTC ACAACCCCGAGGAGAAGGAGGGGGAGGAGGAGGGAGGGATGGAGGTCCTC TTCCGTCCTCTCTGCCTCCTTGATTTCCCCGCCTCCGGCAGCCCTTGCTG TTGCTGCTGCCGCTACTGTTGGCCGTGCTCGTGCTCCTATTGTCGTCTGC TGCTCCTCGAAGGGTGGGAGGGTGTGGAGGAGGCGGGCAAGGTGCCGAAG GAGGGAGTGAAGGAGGAGGTAGGTCGAGACGTGGGGGTGGACGAGAACGC CCAAACCGGTGTGAGGTGAGCTAAGGTCTTGGAGACGGAGGGAGGCGAGT GATGGATGGAGGGAGGGGTCGAGGTAGGCGTACCGGAGATGGGTGAGCGA GCCTAGGAGGGCGAGGAGGGTGATGGGGAGGGAAGGAGGAAAGGAGGGAA GGAAGGAAAAGGAGGAGGGAGGAAGTAGAGCTTGGATGGCTGTGGTGACT AGATGACTGTCACTGCTGCTGCTGCTGCTGCTGTTCTTATTGTTGTTGTT ATTGTTGTTGTTGCTGCTGCTGCTGCTGCTGCCGCCGGGAAGAAGAGGAG TGACCGCGGCACGACCCGAAGAAGCGGGA
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Coding sequence (CDS) from alignment at scaffold_28:103705..104333+

>mRNA_8774 ID=mRNA_8774|Name=jgi.p|Nanoce1779_2|603955|organism=Nannochloropsis oceanica|type=CDS|length=231bp|location=Sequence derived from alignment at scaffold_28:103705..104333+ (Nannochloropsis oceanica)
ATGGAGGTCCTCTTCCGTCCTCTCTGCCTCCTTGATTTCCCCGCCTCCGG
CAGCCCTTGCTGTTGCTGCTGCCGCTACTGTTGGCCGTGCTCGTGCTCCT
ATTGTCGTCTGCTGCTCCTCGAAGGGTGGGAGGGTGTGGAGGAGGCGGGC
AAGGTGCCGAAGGAGGGAGTGAAGGAGGAGGTAGGTCGAGACGTGGGGGT
GGACGAGAACGCCCAAACCGGTGTGAGGTGA
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Synonyms
Publications