jgi.p|Nanoce1779_2|603950, mRNA_8773 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|603950
Unique NamemRNA_8773
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length779
Alignment locationscaffold_28:96999..97777 -

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Properties
Property NameValue
TranscriptId604036
TrackFilteredModels2
ProteinId603950
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_28supercontigscaffold_28:96999..97777 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|603950gene_8773Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|603950mRNA_8773-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8773CDS_8773Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8773 ID=mRNA_8773|Name=jgi.p|Nanoce1779_2|603950|organism=Nannochloropsis oceanica|type=mRNA|length=779bp
GGGGGGGGGAGGAGGAAGGTAAGAGTAAGGTGGAAGAAGACAAGAAGGAG
AAGGAGGAGGGAGAGGAGGAGGAGGAGGAGGAGCAGGAGGAGGCGCTGAT
GGCACTGAAGAGGAAAGTGATGGAAGCCTTTAGTCAGTGGGCCTTTATGG
AGGTGCGAGAAGAGGAGGATGAGGAGGAGGAAGGGACAGAGGAAGAGGTG
AAGAAAGAGGATGAGATCAGTAGCACGAAGACCAACGCCTCTTTTCGCTC
TACTCCTGCCTCCCTTCCTCCTCCTTCCTCCTCATCATTCCAAAAAGAGG
AGAACGAGAAGGAGAACGAGGACGAGGGTGGGGAAACCCAAAACAAGCTC
GAGGAGGACGAGCTCCCCAAGACAAAAAAGACGCAGCAGCAGCAGCACCA
GCAGCAGCAGCTGTGGGACCTCTCCCTCCTCCTCCTTCACCTTCAGTGCC
AGTTTCTTCGTTGTGCCCATGCCCTCTTGCTCGACTCTCCCCCTTCACGA
GGAGCAGAACACGTCCTGTTGATGCGCAACGACACCATCAGCAGCCGCAG
CAGCATCTGCAGCTTTCAACGGGTGGATCTCCTTCGGAACCTTCTCTCCC
TTGCTACTACTACTACTACTGCTATTGCCAATGCTGCTGCTGGTGGTGGT
GGAAATAACGGTGGTTCTAGCCTCACTCTCAATGGTGGTGGTGGAGAGGG
AGGAGGAGGAGGAGGAGGAGGAGGGCTGGGTGACGTTGATGTTGTGGAGG
AATGGATGCAGCTGCTGCTGTTGTTCAGG
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protein sequence of jgi.p|Nanoce1779_2|603950

>mRNA_8773-protein ID=mRNA_8773-protein|Name=jgi.p|Nanoce1779_2|603950|organism=Nannochloropsis oceanica|type=polypeptide|length=186bp
MALKRKVMEAFSQWAFMEVREEEDEEEEGTEEEVKKEDEISSTKTNASFR
STPASLPPPSSSSFQKEENEKENEDEGGETQNKLEEDELPKTKKTQQQQH
QQQQLWDLSLLLLHLQCQFLRCAHALLLDSPPSRGAEHVLLMRNDTISSR
SSICSFQRVDLLRNLLSLATTTTTAIANAAAGGGGN
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mRNA from alignment at scaffold_28:96999..97777-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8773 ID=mRNA_8773|Name=jgi.p|Nanoce1779_2|603950|organism=Nannochloropsis oceanica|type=mRNA|length=779bp|location=Sequence derived from alignment at scaffold_28:96999..97777- (Nannochloropsis oceanica)
GGGGGGGGGAGGAGGAAGGTAAGAGTAAGGTGGAAGAAGACAAGAAGGAG
AAGGAGGAGGGAGAGGAGGAGGAGGAGGAGGAGCAGGAGGAGGCGCTGAT
GGCACTGAAGAGGAAAGTGATGGAAGCCTTTAGTCAGTGGGCCTTTATGG
AGGTGCGAGAAGAGGAGGATGAGGAGGAGGAAGGGACAGAGGAAGAGGTG
AAGAAAGAGGATGAGATCAGTAGCACGAAGACCAACGCCTCTTTTCGCTC
TACTCCTGCCTCCCTTCCTCCTCCTTCCTCCTCATCATTCCAAAAAGAGG
AGAACGAGAAGGAGAACGAGGACGAGGGTGGGGAAACCCAAAACAAGCTC
GAGGAGGACGAGCTCCCCAAGACAAAAAAGACGCAGCAGCAGCAGCACCA
GCAGCAGCAGCTGTGGGACCTCTCCCTCCTCCTCCTTCACCTTCAGTGCC
AGTTTCTTCGTTGTGCCCATGCCCTCTTGCTCGACTCTCCCCCTTCACGA
GGAGCAGAACACGTCCTGTTGATGCGCAACGACACCATCAGCAGCCGCAG
CAGCATCTGCAGCTTTCAACGGGTGGATCTCCTTCGGAACCTTCTCTCCC
TTGCTACTACTACTACTACTGCTATTGCCAATGCTGCTGCTGGTGGTGGT
GGAAATAACGGTGGTTCTAGCCTCACTCTCAATGGTGGTGGTGGAGAGGG
AGGAGGAGGAGGAGGAGGAGGAGGGCTGGGTGACGTTGATGTTGTGGAGG
AATGGATGCAGCTGCTGCTGTTGTTCAGG
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Coding sequence (CDS) from alignment at scaffold_28:96999..97777-

>mRNA_8773 ID=mRNA_8773|Name=jgi.p|Nanoce1779_2|603950|organism=Nannochloropsis oceanica|type=CDS|length=560bp|location=Sequence derived from alignment at scaffold_28:96999..97777- (Nannochloropsis oceanica)
ATGGCACTGAAGAGGAAAGTGATGGAAGCCTTTAGTCAGTGGGCCTTTAT
GGAGGTGCGAGAAGAGGAGGATGAGGAGGAGGAAGGGACAGAGGAAGAGG
TGAAGAAAGAGGATGAGATCAGTAGCACGAAGACCAACGCCTCTTTTCGC
TCTACTCCTGCCTCCCTTCCTCCTCCTTCCTCCTCATCATTCCAAAAAGA
GGAGAACGAGAAGGAGAACGAGGACGAGGGTGGGGAAACCCAAAACAAGC
TCGAGGAGGACGAGCTCCCCAAGACAAAAAAGACGCAGCAGCAGCAGCAC
CAGCAGCAGCAGCTGTGGGACCTCTCCCTCCTCCTCCTTCACCTTCAGTG
CCAGTTTCTTCGTTGTGCCCATGCCCTCTTGCTCGACTCTCCCCCTTCAC
GAGGAGCAGAACACGTCCTGTTGATGCGCAACGACACCATCAGCAGCCGC
AGCAGCATCTGCAGCTTTCAACGGGTGGATCTCCTTCGGAACCTTCTCTC
CCTTGCTACTACTACTACTACTGCTATTGCCAATGCTGCTGCTGGTGGTG
GTGGAAATAA
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Synonyms
Publications