jgi.p|Nanoce1779_2|218942, mRNA_8772 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|218942
Unique Name	mRNA_8772
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	592
Alignment location	scaffold_28:87957..88548 -

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Properties


Property Name	Value
TranscriptId	219028
Track	FilteredModels2
ProteinId	218942

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_28	supercontig	scaffold_28:87957..88548 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|218942	gene_8772	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|218942	mRNA_8772-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8772	CDS_8772	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_28:87957..88548-
coding sequence from alignment at scaffold_28:87957..88548-

mRNA sequence

>mRNA_8772 ID=mRNA_8772|Name=jgi.p|Nanoce1779_2|218942|organism=Nannochloropsis oceanica|type=mRNA|length=592bp
GGGTATGGTTTTTTGAACTATCGTGCCGTGCAGGCGTACGGAAGTGAGAC
GCTGTATGGGTCATATTATGGCGCGGGGGATGTGGTGGGCGTGCTGTTGG
ACATGGACAGAGGGCGGTTAAGTTTCGTCAAGGACGGGGAGGATTTTCAT
ATGGGGAGGCCATCGGTGATGCAGATGGGGGTGGCGTACCGGGGAATGAG
GAAGGGAGGGAAGGATGGATGGTCTCAGGTGTTGTATCCTTGTGTGGGGA
TGAAGAGTGCGGGGGACAAGGTCAGCTTGAGGGAGGGGAAGTGGGTTTGG
TCAAGAGGGGTGAGGACGGGGGTGATGCTGGCGAGTGTGAGGGAGAGTAT
GAGGGAGGTGAGGGCGTGGACGAGGAGGAGGGAGGAGGGGATGGAGGAGG
GGGTGGTGAGAGAGGTGCTGAGGGGGTTCAATACGTGGACGGGGAGGAGG
AGGTTGAGATATCAGGCGAGGGGGGGGGGGGGAAGTGGAGATCGACGCGA
CCCAGGCTAGCCTTGACGCGGTTTGTGGACCGCACCTCAGCTTCTATTCC
TCCCTTCCTCCCTCTTCCTCTGTTGGCCGTGAAGACAGCTGG

protein sequence of jgi.p|Nanoce1779_2|218942

>mRNA_8772-protein ID=mRNA_8772-protein|Name=jgi.p|Nanoce1779_2|218942|organism=Nannochloropsis oceanica|type=polypeptide|length=136bp
MDRGRLSFVKDGEDFHMGRPSVMQMGVAYRGMRKGGKDGWSQVLYPCVGM
KSAGDKVSLREGKWVWSRGVRTGVMLASVRESMREVRAWTRRREEGMEEG
VVREVLRGFNTWTGRRRLRYQARGGGGSGDRRDPG*

mRNA from alignment at scaffold_28:87957..88548-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8772 ID=mRNA_8772|Name=jgi.p|Nanoce1779_2|218942|organism=Nannochloropsis oceanica|type=mRNA|length=592bp|location=Sequence derived from alignment at scaffold_28:87957..88548- (Nannochloropsis oceanica)
GGGTATGGTTTTTTGAACTATCGTGCCGTGCAGGCGTACGGAAGTGAGAC
GCTGTATGGGTCATATTATGGCGCGGGGGATGTGGTGGGCGTGCTGTTGG
ACATGGACAGAGGGCGGTTAAGTTTCGTCAAGGACGGGGAGGATTTTCAT
ATGGGGAGGCCATCGGTGATGCAGATGGGGGTGGCGTACCGGGGAATGAG
GAAGGGAGGGAAGGATGGATGGTCTCAGGTGTTGTATCCTTGTGTGGGGA
TGAAGAGTGCGGGGGACAAGGTCAGCTTGAGGGAGGGGAAGTGGGTTTGG
TCAAGAGGGGTGAGGACGGGGGTGATGCTGGCGAGTGTGAGGGAGAGTAT
GAGGGAGGTGAGGGCGTGGACGAGGAGGAGGGAGGAGGGGATGGAGGAGG
GGGTGGTGAGAGAGGTGCTGAGGGGGTTCAATACGTGGACGGGGAGGAGG
AGGTTGAGATATCAGGCGAGGGGGGGGGGGGGAAGTGGAGATCGACGCGA
CCCAGGCTAGCCTTGACGCGGTTTGTGGACCGCACCTCAGCTTCTATTCC
TCCCTTCCTCCCTCTTCCTCTGTTGGCCGTGAAGACAGCTGG

Coding sequence (CDS) from alignment at scaffold_28:87957..88548-

>mRNA_8772 ID=mRNA_8772|Name=jgi.p|Nanoce1779_2|218942|organism=Nannochloropsis oceanica|type=CDS|length=408bp|location=Sequence derived from alignment at scaffold_28:87957..88548- (Nannochloropsis oceanica)
ATGGACAGAGGGCGGTTAAGTTTCGTCAAGGACGGGGAGGATTTTCATAT
GGGGAGGCCATCGGTGATGCAGATGGGGGTGGCGTACCGGGGAATGAGGA
AGGGAGGGAAGGATGGATGGTCTCAGGTGTTGTATCCTTGTGTGGGGATG
AAGAGTGCGGGGGACAAGGTCAGCTTGAGGGAGGGGAAGTGGGTTTGGTC
AAGAGGGGTGAGGACGGGGGTGATGCTGGCGAGTGTGAGGGAGAGTATGA
GGGAGGTGAGGGCGTGGACGAGGAGGAGGGAGGAGGGGATGGAGGAGGGG
GTGGTGAGAGAGGTGCTGAGGGGGTTCAATACGTGGACGGGGAGGAGGAG
GTTGAGATATCAGGCGAGGGGGGGGGGGGGAAGTGGAGATCGACGCGACC
CAGGCTAG

Synonyms

Publications