jgi.p|Nanoce1779_2|546637, mRNA_8771 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|546637
Unique NamemRNA_8771
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1910
Alignment locationscaffold_28:85457..87366 -

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Properties
Property NameValue
TranscriptId546723
TrackFilteredModels2
ProteinId546637
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_28supercontigscaffold_28:85457..87366 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|546637gene_8771Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|546637mRNA_8771-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8771CDS_8771Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8771 ID=mRNA_8771|Name=jgi.p|Nanoce1779_2|546637|organism=Nannochloropsis oceanica|type=mRNA|length=1910bp
GAGACATGGAGTGAGGCCGGTGCTGGTCTGGTTTGCGGCCGTATTGTGGC
TGAATGAGAGAATGAGGACGGCGTTGCCATTCATGGACATGGGTGGAGGG
TGGGGAGGGAGAGAGGGAGGGTTGATTGCCACGGAATATGATTTGAACTG
TGTTGGAGGGGAAGAGGAGAGGGAGGGAGGAGGGGGGGGAGGAAGGCCAT
CGGTGATGGGACGGATGGTGGCGAGGATGAGGGGGTTGATTTTGACAAGT
ACGAAGATGGAGGTATGGAGGGAGGTGTTGAAGGAGAGCACGACACCCAC
CCTGCCGCCCGCAGATGAGTATGACAGGCCAGAGGAATTGAGAGAGATGG
CTTTGAATAGGGTGCAGGCGAGGGAGGCCTTGATGGAGGACGAAGACGAG
GACGAGGACGGGGTGATGGATCTGGAAGAGAGGGTGAGGAAATCCTTGTT
TGGCCAGTTGAAGGAGCAGATGAGTGGTTGGGAGGATAAGGCATTGAGGA
GGGGGTACGTGCATATGCAGGATTCAGGGCAGCCGAGGGCATTTTATGTG
AAGCTCGTGGGGGAGGGCGTGGATGATCATGGCGGACCGTATCGGGCCGT
GTTTGAGATGGCGGTTGGCGAGGAGGTGCGAGGGCGGGAGGGAGAGAGGG
GGGGAGGGTTGGGGTTGTTGGTGCCGTGTGCGAATGCCCGTGTAGGGGTG
GGGGAGAATAGAGACCAATATGTCTTGAATTCGGCGGTGATTCAGGAGGA
AGGAAGAAGGGATGAAGGGGCGGTGACGGGCGCCGGTGGTGGTGGCGGTG
GTGGTGGTGGTGGAGGAGATAGACTGTCGTTGTTTCATCATCTGGGGAAA
TTAATGGGGATGGCGACTCGGCATAAAATCTTGGTGCCTTTGTCTCTACC
AGCGTTGGTGTGGAAGTCTCTCGTAGGCTTGTCGGTGGGGAGGAAGGAGT
TAGAAGCCATGGACCACCTGATGGCGCGAACGTTGGGGGAGGCGGAAGGG
ATAGTGCTGAGGGGGGGAGGGAGGGAGAAAGGAGAGGAGGAGGAGGGATG
GGAGGAAATGAGAGGGATGATAGAGGAAGTGGTGGCCAGGGGAACAGGTA
CTAGGAGAGCACCTAGGAGTCGTTCTCTGAACCTTCCTTCCTCTTCATAC
TCCTCTCCCTCGCTACAGCAGCAGCAGCAACATCTTCTCCTCATCGAACT
TGCGCAGCAATCCCTCCTCCTTGATTGCATCGATCCGCTTACAGCCCTCT
GCTCAGGTCTTGGGCGCATCCTCCCTGCCCCCCTCCTCCTTCTCTTCCTC
CCCTCCGAGCTGGAGCACCTCATCTGTGGACCCCCCTCTATAGACCTGAC
CGTCTTAAGACAAGCCACCGAATACGAGGGCAACCTCTCTCAAACCGAAC
CTCACATCCAAGACTTCTGGGCAGTCCTTAACGAAATGAGCATGGAAGAA
CGACGGGCGTTCATTAACTTCTGCAGTGGCCGTTCCCGCCTGCCAGCAAC
CGCTGCTGAGTTTCCCATGACTTTCAAACTGTCTCCACCGCAGCCCAAGG
CGGAGGAACATCCGGACGAGTACTTACCGGTGGCGCAGACGTGTTTCTTT
TCGTTGAGTTTGCCGCGATATGCGAGCAGGGAGAGGATGAAAGAGAAGTT
GTTGTATGCGGTGAGGAATACGGAGTTGATGGATGCGGATTTCTTGGTGC
GAGGCGAAGGAGGAGGAGGAGGGATGTAAATTGTACAGGGATAAGGAAAG
GGAGAATCTTTAAAAAGGAGAGGTAGTAGTGCTCTTAGAAATAGTTATAG
TAAATCGAGTGTGAAAAAAAAAAAGAAGGAGACAAGGGAATAAATAAGAT
AGGAGAACTTAGAGCCCCAAAGAATAACCCCCCCAAAAAAGAGACAATGC
GATGCCGGGG
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protein sequence of jgi.p|Nanoce1779_2|546637

>mRNA_8771-protein ID=mRNA_8771-protein|Name=jgi.p|Nanoce1779_2|546637|organism=Nannochloropsis oceanica|type=polypeptide|length=556bp
MRTALPFMDMGGGWGGREGGLIATEYDLNCVGGEEEREGGGGGGRPSVMG
RMVARMRGLILTSTKMEVWREVLKESTTPTLPPADEYDRPEELREMALNR
VQAREALMEDEDEDEDGVMDLEERVRKSLFGQLKEQMSGWEDKALRRGYV
HMQDSGQPRAFYVKLVGEGVDDHGGPYRAVFEMAVGEEVRGREGERGGGL
GLLVPCANARVGVGENRDQYVLNSAVIQEEGRRDEGAVTGAGGGGGGGGG
GGDRLSLFHHLGKLMGMATRHKILVPLSLPALVWKSLVGLSVGRKELEAM
DHLMARTLGEAEGIVLRGGGREKGEEEEGWEEMRGMIEEVVARGTGTRRA
PRSRSLNLPSSSYSSPSLQQQQQHLLLIELAQQSLLLDCIDPLTALCSGL
GRILPAPLLLLFLPSELEHLICGPPSIDLTVLRQATEYEGNLSQTEPHIQ
DFWAVLNEMSMEERRAFINFCSGRSRLPATAAEFPMTFKLSPPQPKAEEH
PDEYLPVAQTCFFSLSLPRYASRERMKEKLLYAVRNTELMDADFLVRGEG
GGGGM*
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mRNA from alignment at scaffold_28:85457..87366-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8771 ID=mRNA_8771|Name=jgi.p|Nanoce1779_2|546637|organism=Nannochloropsis oceanica|type=mRNA|length=1910bp|location=Sequence derived from alignment at scaffold_28:85457..87366- (Nannochloropsis oceanica)
GAGACATGGAGTGAGGCCGGTGCTGGTCTGGTTTGCGGCCGTATTGTGGC
TGAATGAGAGAATGAGGACGGCGTTGCCATTCATGGACATGGGTGGAGGG
TGGGGAGGGAGAGAGGGAGGGTTGATTGCCACGGAATATGATTTGAACTG
TGTTGGAGGGGAAGAGGAGAGGGAGGGAGGAGGGGGGGGAGGAAGGCCAT
CGGTGATGGGACGGATGGTGGCGAGGATGAGGGGGTTGATTTTGACAAGT
ACGAAGATGGAGGTATGGAGGGAGGTGTTGAAGGAGAGCACGACACCCAC
CCTGCCGCCCGCAGATGAGTATGACAGGCCAGAGGAATTGAGAGAGATGG
CTTTGAATAGGGTGCAGGCGAGGGAGGCCTTGATGGAGGACGAAGACGAG
GACGAGGACGGGGTGATGGATCTGGAAGAGAGGGTGAGGAAATCCTTGTT
TGGCCAGTTGAAGGAGCAGATGAGTGGTTGGGAGGATAAGGCATTGAGGA
GGGGGTACGTGCATATGCAGGATTCAGGGCAGCCGAGGGCATTTTATGTG
AAGCTCGTGGGGGAGGGCGTGGATGATCATGGCGGACCGTATCGGGCCGT
GTTTGAGATGGCGGTTGGCGAGGAGGTGCGAGGGCGGGAGGGAGAGAGGG
GGGGAGGGTTGGGGTTGTTGGTGCCGTGTGCGAATGCCCGTGTAGGGGTG
GGGGAGAATAGAGACCAATATGTCTTGAATTCGGCGGTGATTCAGGAGGA
AGGAAGAAGGGATGAAGGGGCGGTGACGGGCGCCGGTGGTGGTGGCGGTG
GTGGTGGTGGTGGAGGAGATAGACTGTCGTTGTTTCATCATCTGGGGAAA
TTAATGGGGATGGCGACTCGGCATAAAATCTTGGTGCCTTTGTCTCTACC
AGCGTTGGTGTGGAAGTCTCTCGTAGGCTTGTCGGTGGGGAGGAAGGAGT
TAGAAGCCATGGACCACCTGATGGCGCGAACGTTGGGGGAGGCGGAAGGG
ATAGTGCTGAGGGGGGGAGGGAGGGAGAAAGGAGAGGAGGAGGAGGGATG
GGAGGAAATGAGAGGGATGATAGAGGAAGTGGTGGCCAGGGGAACAGGTA
CTAGGAGAGCACCTAGGAGTCGTTCTCTGAACCTTCCTTCCTCTTCATAC
TCCTCTCCCTCGCTACAGCAGCAGCAGCAACATCTTCTCCTCATCGAACT
TGCGCAGCAATCCCTCCTCCTTGATTGCATCGATCCGCTTACAGCCCTCT
GCTCAGGTCTTGGGCGCATCCTCCCTGCCCCCCTCCTCCTTCTCTTCCTC
CCCTCCGAGCTGGAGCACCTCATCTGTGGACCCCCCTCTATAGACCTGAC
CGTCTTAAGACAAGCCACCGAATACGAGGGCAACCTCTCTCAAACCGAAC
CTCACATCCAAGACTTCTGGGCAGTCCTTAACGAAATGAGCATGGAAGAA
CGACGGGCGTTCATTAACTTCTGCAGTGGCCGTTCCCGCCTGCCAGCAAC
CGCTGCTGAGTTTCCCATGACTTTCAAACTGTCTCCACCGCAGCCCAAGG
CGGAGGAACATCCGGACGAGTACTTACCGGTGGCGCAGACGTGTTTCTTT
TCGTTGAGTTTGCCGCGATATGCGAGCAGGGAGAGGATGAAAGAGAAGTT
GTTGTATGCGGTGAGGAATACGGAGTTGATGGATGCGGATTTCTTGGTGC
GAGGCGAAGGAGGAGGAGGAGGGATGTAAATTGTACAGGGATAAGGAAAG
GGAGAATCTTTAAAAAGGAGAGGTAGTAGTGCTCTTAGAAATAGTTATAG
TAAATCGAGTGTGAAAAAAAAAAAGAAGGAGACAAGGGAATAAATAAGAT
AGGAGAACTTAGAGCCCCAAAGAATAACCCCCCCAAAAAAGAGACAATGC
GATGCCGGGG
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Coding sequence (CDS) from alignment at scaffold_28:85457..87366-

>mRNA_8771 ID=mRNA_8771|Name=jgi.p|Nanoce1779_2|546637|organism=Nannochloropsis oceanica|type=CDS|length=1668bp|location=Sequence derived from alignment at scaffold_28:85457..87366- (Nannochloropsis oceanica)
ATGAGGACGGCGTTGCCATTCATGGACATGGGTGGAGGGTGGGGAGGGAG
AGAGGGAGGGTTGATTGCCACGGAATATGATTTGAACTGTGTTGGAGGGG
AAGAGGAGAGGGAGGGAGGAGGGGGGGGAGGAAGGCCATCGGTGATGGGA
CGGATGGTGGCGAGGATGAGGGGGTTGATTTTGACAAGTACGAAGATGGA
GGTATGGAGGGAGGTGTTGAAGGAGAGCACGACACCCACCCTGCCGCCCG
CAGATGAGTATGACAGGCCAGAGGAATTGAGAGAGATGGCTTTGAATAGG
GTGCAGGCGAGGGAGGCCTTGATGGAGGACGAAGACGAGGACGAGGACGG
GGTGATGGATCTGGAAGAGAGGGTGAGGAAATCCTTGTTTGGCCAGTTGA
AGGAGCAGATGAGTGGTTGGGAGGATAAGGCATTGAGGAGGGGGTACGTG
CATATGCAGGATTCAGGGCAGCCGAGGGCATTTTATGTGAAGCTCGTGGG
GGAGGGCGTGGATGATCATGGCGGACCGTATCGGGCCGTGTTTGAGATGG
CGGTTGGCGAGGAGGTGCGAGGGCGGGAGGGAGAGAGGGGGGGAGGGTTG
GGGTTGTTGGTGCCGTGTGCGAATGCCCGTGTAGGGGTGGGGGAGAATAG
AGACCAATATGTCTTGAATTCGGCGGTGATTCAGGAGGAAGGAAGAAGGG
ATGAAGGGGCGGTGACGGGCGCCGGTGGTGGTGGCGGTGGTGGTGGTGGT
GGAGGAGATAGACTGTCGTTGTTTCATCATCTGGGGAAATTAATGGGGAT
GGCGACTCGGCATAAAATCTTGGTGCCTTTGTCTCTACCAGCGTTGGTGT
GGAAGTCTCTCGTAGGCTTGTCGGTGGGGAGGAAGGAGTTAGAAGCCATG
GACCACCTGATGGCGCGAACGTTGGGGGAGGCGGAAGGGATAGTGCTGAG
GGGGGGAGGGAGGGAGAAAGGAGAGGAGGAGGAGGGATGGGAGGAAATGA
GAGGGATGATAGAGGAAGTGGTGGCCAGGGGAACAGGTACTAGGAGAGCA
CCTAGGAGTCGTTCTCTGAACCTTCCTTCCTCTTCATACTCCTCTCCCTC
GCTACAGCAGCAGCAGCAACATCTTCTCCTCATCGAACTTGCGCAGCAAT
CCCTCCTCCTTGATTGCATCGATCCGCTTACAGCCCTCTGCTCAGGTCTT
GGGCGCATCCTCCCTGCCCCCCTCCTCCTTCTCTTCCTCCCCTCCGAGCT
GGAGCACCTCATCTGTGGACCCCCCTCTATAGACCTGACCGTCTTAAGAC
AAGCCACCGAATACGAGGGCAACCTCTCTCAAACCGAACCTCACATCCAA
GACTTCTGGGCAGTCCTTAACGAAATGAGCATGGAAGAACGACGGGCGTT
CATTAACTTCTGCAGTGGCCGTTCCCGCCTGCCAGCAACCGCTGCTGAGT
TTCCCATGACTTTCAAACTGTCTCCACCGCAGCCCAAGGCGGAGGAACAT
CCGGACGAGTACTTACCGGTGGCGCAGACGTGTTTCTTTTCGTTGAGTTT
GCCGCGATATGCGAGCAGGGAGAGGATGAAAGAGAAGTTGTTGTATGCGG
TGAGGAATACGGAGTTGATGGATGCGGATTTCTTGGTGCGAGGCGAAGGA
GGAGGAGGAGGGATGTAA
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Synonyms
Publications