jgi.p|Nanoce1779_2|145135, mRNA_877 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|145135
Unique Name	mRNA_877
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1650
Alignment location	scaffold_2:644510..646363 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	145221
Track	FilteredModels2
ProteinId	145135

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:644510..646363 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|145135	gene_877	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|145135	mRNA_877-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_877	CDS_877	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:644510..646363+
coding sequence from alignment at scaffold_2:644510..646363+

mRNA sequence

>mRNA_877 ID=mRNA_877|Name=jgi.p|Nanoce1779_2|145135|organism=Nannochloropsis oceanica|type=mRNA|length=1650bp
AGGGCATGATTTGCCTTATATCAAGATAGACTTCCCTGATTTGTAGCAGT
TGAGTGATGGGTTTGGGTTTGGGTTAGTCCTGCGCAATTAGGTGATGGAG
CATAATCAGTGCCATACTGGAAAGGATTACAGACAGCCATGTCACCACCT
CTGAGATCTCACACCACAATCACATTGACGCAATTCACAGAAAGGGATGG
CATGACCTGAAACTTAAGCTGTCCCTGCACGCAGGTATCCAATAGGCCCG
AGGTCGGCATCTTTCCTCAACGATTCATACGGGTCCCGGGGCCATCATGG
ATCAGCCATCCGCAGCAGAGGCCGCAGTAGAAAATACCGTCTCATCAACC
ACACAGCAGGCGAAAGGCATCTTGGAACATGTACCCCTCTCTGCAGCAGC
ACCGGACGCATCATCCCTATCTTCCCCGCCTTCGATGCTTGACCCACGAG
AAGACGCAGATCTAGGACATTGCCAATGCCAGTCGCAATTCACATTACTT
TCCTCCACTGAAGCAGTATCATCGTCACCCTCAGATTCCTCCTCATATGC
TTCCCGCCGTCCTCGCCTCGAAGCCCACGAGCAAGTCCTGCGGCTCCGGG
CCTGTGAAATCGCGGCAGTGGCAGGCTTCCATCCATTCAAAGACCTACTA
GAGCTTTTAGAGGAGCACATCTATCAAGATCTCCCTCAATTACAAGGGGA
AGACTATGCGGTGTGTGACCTGGTCCTTATCAGCAAGGAACAAGAGTTCG
AGCACCTTGCTCACCAAGCAGGTCCCCAGGCGGCCGCGGCACTACGTAAG
ATCCATGCGGGAAGCATGTCGGCCACAGTGCAAACCACAAGGGACGTGGA
TCAAATTAAGATGGACATGGGAAAAGCTCTGAGACTGGCTGCGGCGGGAG
GGAGGGTGGCCGAGGCTGGTATTACTGTGTTGCGGAATCATTTGACCCAC
ATGTTGTCGACGGCGTTTGGGAAGCGGCATGAGGATTCGGCGATTGAATT
GTATGAGAGCCGGCATGGTGTAAAGGTGCATAGTCAGAATGAGAGGATGT
TGACTTGGTGGTTTCCTCAGGACCCAGGTGGCGTGTCATTGGAAACTCCC
CCCCCATTAGATATCAAGCGTTTGCGGGAACGGCGGGAAGTGCGCGAAGG
AGCAGCCGCAGCAGCAAAAGTAGGAGGAGGAAAAGAAGGAGGAGGATCGG
GATTAGGAGAGGGAGGAGGAGCTGAGGTAGAGTATAGCGTTGTGGCTGTG
GGGGATCAAGATTCTTCTGCCAAAGTCCAGCCATCACCGAAAGCAATGTC
GTCTTCGAAGTCGTCATTTCTCTCCTCTTCCGAACAGCACAAGCAGCACG
ATCATCATCCCCGCTCAACCTCCCGCGCGACAATCCGGGGCCCCGATGCT
TGGTTTCGTGTGTGTGGAGTGGTGGATGGTCTGACTGAAACCCTGGACGC
CAGCCACGACGATCCAAATGCGTGGCAAATGCGGACAACAGTAGTAGAGA
TGAAGAACCGTGTGGCCGTGCGGAATGTGCGCGACCCGCCCCCTTTTCAC
GACACCCTGCAATTGGTGACGTAGTGCGTGGAAGAGGAAAAGGCGGAGGA
GAAGGAGAGTTAGAAGAAAACGAAGACGAAGGAGAAGAAGAAGACGGAGG

protein sequence of jgi.p|Nanoce1779_2|145135

>mRNA_877-protein ID=mRNA_877-protein|Name=jgi.p|Nanoce1779_2|145135|organism=Nannochloropsis oceanica|type=polypeptide|length=426bp
MDQPSAAEAAVENTVSSTTQQAKGILEHVPLSAAAPDASSLSSPPSMLDP
REDADLGHCQCQSQFTLLSSTEAVSSSPSDSSSYASRRPRLEAHEQVLRL
RACEIAAVAGFHPFKDLLELLEEHIYQDLPQLQGEDYAVCDLVLISKEQE
FEHLAHQAGPQAAAALRKIHAGSMSATVQTTRDVDQIKMDMGKALRLAAA
GGRVAEAGITVLRNHLTHMLSTAFGKRHEDSAIELYESRHGVKVHSQNER
MLTWWFPQDPGGVSLETPPPLDIKRLRERREVREGAAAAAKVGGGKEGGG
SGLGEGGGAEVEYSVVAVGDQDSSAKVQPSPKAMSSSKSSFLSSSEQHKQ
HDHHPRSTSRATIRGPDAWFRVCGVVDGLTETLDASHDDPNAWQMRTTVV
EMKNRVAVRNVRDPPPFHDTLQLVT*

mRNA from alignment at scaffold_2:644510..646363+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_877 ID=mRNA_877|Name=jgi.p|Nanoce1779_2|145135|organism=Nannochloropsis oceanica|type=mRNA|length=1854bp|location=Sequence derived from alignment at scaffold_2:644510..646363+ (Nannochloropsis oceanica)
AGGGCATGATTTGCCTTATATCAAGATAGACTTCCCTGATTTGTAGCAGT
TGAGTGATGGGTTTGGGTTTGGGTTAGTCCTGCGCAATTAGGTGATGGAG
CATAATCAGTGCCATACTGGAAAGGATTACAGACAGCCATGTCACCACCT
CTGAGATCTCACACCACAATCACATTGACGCAATTCACAGAAAGGGATGG
CATGACCTGAAACTTAAGCTGTCCCTGCACGCAGGTATCCAATAGGCCCG
AGGTCGGCATCTTTCCTCAACGATTCATACGGGTCCCGGGGCCATCATGG
ATCAGCCATCCGCAGCAGAGGCCGCAGTAGAAAATACCGTCTCATCAACC
ACACAGCAGGCGAAAGGCATCTTGGAACATGTACCCCTCTCTGCAGCAGC
ACCGGACGCATCATCCCTATCTTCCCCGCCTTCGATGCTTGACCCACGAG
AAGACGCAGATCTAGGACATTGCCAATGCCAGTCGCAATTCACATTACTT
TCCTCCACTGAAGCAGTATCATCGTCACCCTCAGATTCCTCCTCATATGC
TTCCCGCCGTCCTCGCCTCGAAGCCCACGAGCAAGTCCTGCGGCTCCGGG
CCTGTGAAATCGCGGCAGTGGCAGGCTTCCATCCATTCAAAGACCTACTA
GAGCTTTTAGAGGAGCACATCTATCAAGATCTCCCTCAATTACAAGGGGA
AGACTATGCGGTGTGTGACCTGGTCCTTATCAGCAAGGAACAAGAGTTCG
AGCACCTTGCTCACCAAGCAGGTCCCCAGGCGGCCGCGGCACTACGTAAG
ATCCATGCGGGAAGCATGTCGGCCACAGTGCAAACCACAAGGGACGTGGA
TCAAATTAAGATGGACATGGGAAAAGCTCTGAGACTGGCTGCGGCGGGAG
GGAGGGTGGCCGAGGCTGGTATTACTGTGTTGCGGAATCATTTGACCCAC
ATGTTGTCGACGGCGTTTGGGAAGCGGCATGAGGATTCGGCGATTGAATT
GTATGAGAGCCGGCATGGTGTAAAGGTGCATAGTCAGAATGAGAGGATGT
TGACTTGGTGGTTTCCTCAGGACCCAGGTGGCGTGTCATTGGAAACTCCC
CCCCCATTAGATATCAAGCGTTTGCGGGAACGGCGGGAAGTGCGCGAAGG
AGCAGCCGCAGCAGCAAAAGTAGGAGGAGGAAAAGAAGGAGGAGGATCGG
GATTAGGAGAGGGAGGAGGAGCTGAGGTAGAGTATAGCGTTGTGGCTGTG
GGGGATCAAGATTCTTCTGCCAAAGTCCAGCCATCACCGAAAGCAATGTC
GTCTTCGAAGTCGTCATTTCTCTCCTCTTCCGAACAGCACAAGCAGCACG
ATCATCATCCCCGCTCAACCTCCCGCGCGACAATCCGGGGCCCCGATGCT
TGGTTTCGTGTGTGTGGAGTGGTGGATGGTCTGACTGAAACCCTGGACGC
CAGCCACGACGATCCAAATGCGTGGCAAATGCGGACAACAGTAGTAGAGG
TACGTGAAATGGATGGCATTTGATTGAATGGTGGTATGATCAGAGGCAGG
GGACAAATTCACCTTGCTCCATGGGTGATGTAATCCTCCTTGCTTAACTT
CCATCTCACTCACACACATACACACGCATGCACACACAGATGAAGAACCG
TGTGGCCGTGCGGAATGTGCGCGACCCGCCCCCTTTTCACGACACCCTGC
AATTGGTGACGTACATGCTAATGGTAGATGGGGCGAATGGAGGGGGAGGG
ACGACATGGGGGGATTTGGTGCAGGTAGTGCGTGGAAGAGGAAAAGGCGG
AGGAGAAGGAGAGTTAGAAGAAAACGAAGACGAAGGAGAAGAAGAAGACG
GAGG

Coding sequence (CDS) from alignment at scaffold_2:644510..646363+

>mRNA_877 ID=mRNA_877|Name=jgi.p|Nanoce1779_2|145135|organism=Nannochloropsis oceanica|type=CDS|length=3834bp|location=Sequence derived from alignment at scaffold_2:644510..646363+ (Nannochloropsis oceanica)
ATGGATCAGCCATCCGCAGCAGAGGCCGCAGTAGAAAATACCGTCTCATC
AACCACACAGCAGGCGAAAGGCATCTTGGAACATGTACCCCTCTCTGCAG
CAGCACCGGACGCATCATCCCTATCTTCCCCGCCTTCGATGCTTGACCCA
CGAGAAGACGCAGATCTAGGACATTGCCAATGCCAGTCGCAATTCACATT
ACTTTCCTCCACTGAAGCAGTATCATCGTCACCCTCAGATTCCTCCTCAT
ATGCTTCCCGCCGTCCTCGCCTCGAAGCCCACGAGCAAGTCCTGCGGCTC
CGGGCCTGTGAAATCGCGGCAGTGGCAGGCTTCCATCCATTCAAAGACCT
ACTAGAGCTTTTAGAGGAGCACATCTATCAAGATCTCCCTCAATTACAAG
GGGAAGACTATGCGGTGTGTGACCTGGTCCTTATCAGCAAGGAACAAGAG
TTCGAGCACCTTGCTCACCAAGCAGGTCCCCAGGCGGCCGCGGCACTACG
TAAGATCCATGCGGGAAGCATGTCGGCCACAGTGCAAACCACAAGGGACG
TGGATCAAATTAAGATGGACATGGGAAAAGCTCTGAGACTGGCTGCGGCG
GGAGGGAGGGTGGCCGAGGCTGGTATTACTGTGTTGCGGAATCATTTGAC
CCACATGTTGTCGACGGCGTTTGGGAAGCGGCATGAGGATTCGGCGATTG
AATTGTATGAGAGCCGGCATGGTGTAAAGGTGCATAGTCAGAATGAGAGG
ATGTTGACTTGGTGGTTTCCTCAGGACCCAGGTGGCGTGTCATTGGAAAC
TCCCCCCCCATTAGATATCAAGCGTTTGCGGGAACGGCGGGAAGTGCGCG
AAGGAGCAGCCGCAGCAGCAAAAGTAGGAGGAGGAAAAGAAGGAGGAGGA
TCGGGATTAGGAGAGGGAGGAGGAGCTGAGGTAGAGTATAGCGTTGTGGC
TGTGGGGGATCAAGATTCTTCTGCCAAAGTCCAGCCATCACCGAAAGCAA
TGTCGTCTTCGAAGTCGTCATTTCTCTCCTCTTCCGAACAGCACAAGCAG
CACGATCATCATCCCCGCTCAACCTCCCGCGCGACAATCCGGGGCCCCGA
TGCTTGGTTTCGTGTGTGTGGAGTGGTGGATGGTCTGACTGAAACCCTGG
ACGCCAGCCACGACGATCCAAATGCGTGGCAAATGCGGACAACAGTAGTA
GAGATGAAGAACCGTGTGGCCGTGCGGAATGTGCGCGACCCGCCCCCTTT
TCACGACACCCTGCAATTGGTGACGTAGATGGATCAGCCATCCGCAGCAG
AGGCCGCAGTAGAAAATACCGTCTCATCAACCACACAGCAGGCGAAAGGC
ATCTTGGAACATGTACCCCTCTCTGCAGCAGCACCGGACGCATCATCCCT
ATCTTCCCCGCCTTCGATGCTTGACCCACGAGAAGACGCAGATCTAGGAC
ATTGCCAATGCCAGTCGCAATTCACATTACTTTCCTCCACTGAAGCAGTA
TCATCGTCACCCTCAGATTCCTCCTCATATGCTTCCCGCCGTCCTCGCCT
CGAAGCCCACGAGCAAGTCCTGCGGCTCCGGGCCTGTGAAATCGCGGCAG
TGGCAGGCTTCCATCCATTCAAAGACCTACTAGAGCTTTTAGAGGAGCAC
ATCTATCAAGATCTCCCTCAATTACAAGGGGAAGACTATGCGGTGTGTGA
CCTGGTCCTTATCAGCAAGGAACAAGAGTTCGAGCACCTTGCTCACCAAG
CAGGTCCCCAGGCGGCCGCGGCACTACGTAAGATCCATGCGGGAAGCATG
TCGGCCACAGTGCAAACCACAAGGGACGTGGATCAAATTAAGATGGACAT
GGGAAAAGCTCTGAGACTGGCTGCGGCGGGAGGGAGGGTGGCCGAGGCTG
GTATTACTGTGTTGCGGAATCATTTGACCCACATGTTGTCGACGGCGTTT
GGGAAGCGGCATGAGGATTCGGCGATTGAATTGTATGAGAGCCGGCATGG
TGTAAAGGTGCATAGTCAGAATGAGAGGATGTTGACTTGGTGGTTTCCTC
AGGACCCAGGTGGCGTGTCATTGGAAACTCCCCCCCCATTAGATATCAAG
CGTTTGCGGGAACGGCGGGAAGTGCGCGAAGGAGCAGCCGCAGCAGCAAA
AGTAGGAGGAGGAAAAGAAGGAGGAGGATCGGGATTAGGAGAGGGAGGAG
GAGCTGAGGTAGAGTATAGCGTTGTGGCTGTGGGGGATCAAGATTCTTCT
GCCAAAGTCCAGCCATCACCGAAAGCAATGTCGTCTTCGAAGTCGTCATT
TCTCTCCTCTTCCGAACAGCACAAGCAGCACGATCATCATCCCCGCTCAA
CCTCCCGCGCGACAATCCGGGGCCCCGATGCTTGGTTTCGTGTGTGTGGA
GTGGTGGATGGTCTGACTGAAACCCTGGACGCCAGCCACGACGATCCAAA
TGCGTGGCAAATGCGGACAACAGTAGTAGAGATGAAGAACCGTGTGGCCG
TGCGGAATGTGCGCGACCCGCCCCCTTTTCACGACACCCTGCAATTGGTG
ACGTAGATGGATCAGCCATCCGCAGCAGAGGCCGCAGTAGAAAATACCGT
CTCATCAACCACACAGCAGGCGAAAGGCATCTTGGAACATGTACCCCTCT
CTGCAGCAGCACCGGACGCATCATCCCTATCTTCCCCGCCTTCGATGCTT
GACCCACGAGAAGACGCAGATCTAGGACATTGCCAATGCCAGTCGCAATT
CACATTACTTTCCTCCACTGAAGCAGTATCATCGTCACCCTCAGATTCCT
CCTCATATGCTTCCCGCCGTCCTCGCCTCGAAGCCCACGAGCAAGTCCTG
CGGCTCCGGGCCTGTGAAATCGCGGCAGTGGCAGGCTTCCATCCATTCAA
AGACCTACTAGAGCTTTTAGAGGAGCACATCTATCAAGATCTCCCTCAAT
TACAAGGGGAAGACTATGCGGTGTGTGACCTGGTCCTTATCAGCAAGGAA
CAAGAGTTCGAGCACCTTGCTCACCAAGCAGGTCCCCAGGCGGCCGCGGC
ACTACGTAAGATCCATGCGGGAAGCATGTCGGCCACAGTGCAAACCACAA
GGGACGTGGATCAAATTAAGATGGACATGGGAAAAGCTCTGAGACTGGCT
GCGGCGGGAGGGAGGGTGGCCGAGGCTGGTATTACTGTGTTGCGGAATCA
TTTGACCCACATGTTGTCGACGGCGTTTGGGAAGCGGCATGAGGATTCGG
CGATTGAATTGTATGAGAGCCGGCATGGTGTAAAGGTGCATAGTCAGAAT
GAGAGGATGTTGACTTGGTGGTTTCCTCAGGACCCAGGTGGCGTGTCATT
GGAAACTCCCCCCCCATTAGATATCAAGCGTTTGCGGGAACGGCGGGAAG
TGCGCGAAGGAGCAGCCGCAGCAGCAAAAGTAGGAGGAGGAAAAGAAGGA
GGAGGATCGGGATTAGGAGAGGGAGGAGGAGCTGAGGTAGAGTATAGCGT
TGTGGCTGTGGGGGATCAAGATTCTTCTGCCAAAGTCCAGCCATCACCGA
AAGCAATGTCGTCTTCGAAGTCGTCATTTCTCTCCTCTTCCGAACAGCAC
AAGCAGCACGATCATCATCCCCGCTCAACCTCCCGCGCGACAATCCGGGG
CCCCGATGCTTGGTTTCGTGTGTGTGGAGTGGTGGATGGTCTGACTGAAA
CCCTGGACGCCAGCCACGACGATCCAAATGCGTGGCAAATGCGGACAACA
GTAGTAGAGATGAAGAACCGTGTGGCCGTGCGGAATGTGCGCGACCCGCC
CCCTTTTCACGACACCCTGCAATTGGTGACGTAG

Synonyms

Publications