jgi.p|Nanoce1779_2|603930, mRNA_8769 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|603930
Unique NamemRNA_8769
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length884
Alignment locationscaffold_28:76984..77867 -

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Properties
Property NameValue
TranscriptId604016
TrackFilteredModels2
ProteinId603930
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_28supercontigscaffold_28:76984..77867 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|603930gene_8769Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|603930mRNA_8769-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8769CDS_8769Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8769 ID=mRNA_8769|Name=jgi.p|Nanoce1779_2|603930|organism=Nannochloropsis oceanica|type=mRNA|length=884bp
ACTCTCTACTCTAGAGTTTTTTAAGCCCTTGCTTCTTTGACTCATCATTT
CCAGCTTTTCCTTTCTCTTTCTCCATTCATCGGCAGAAAACTTCGAGGCC
CCCGAGACAGTCAACATCCATGCCATCTTGGTGTCTGCCACTACTGCTTC
CTTCTTTCAAATTTATGGTACATCCAAGGCGTCTAATTTCGTTTCCGCTT
GATTTGCCTTCCGTTTCACTTCCTTCTGTCTCGATTCACTGTATATACAA
CACTCTTTCTACTTTCCTACGTATTTTCCTTCCTCATACCCATTCCCTCC
GCTCTCCCTCGCTCCTTTCCTCCTCCTGCAAGCTCCGCCGTCAGCTTATC
CACCTGCCTACCGAGCCTTGCCATCTGGTAGTGCAACGAGCCAATTTCAT
CCTCCTTTCCACCAATAACTCCCTTCAACGCCGCAAGCTCTCCTTCCAAC
CTATGAATAGTGGCAGTAGCCGCGGTCCCCTCGGCAACGAGCCCCCTGTT
CTTGTTAATCAGCGCCTGGATCTGATGCTTGAATCCGTCCACTGCCACGA
AAGGGACACGCTCAGGAGGGGTGAAAAGAGTATTCCCCCTCGACCTTCCT
CCCATCCCTCCTCCTACCGCTCCTGCTGCTGCAGCTCCGGCACCAGCCAT
GGTCCGACGTCCTCCTACTGCACCTCTTCCACCGCTGCCACCCCTGCCGT
CGTTATCTGTTGGGGTGAGGGAAGAAGAGGCAGAGGGCTGGCCAGCGACA
GTGTCGAAGTCATGCTGTAGCCCTCCCCTTCCTCTCCCCCTCCCTCCTCC
TACTCTTCCAGCGGGACGCAAGCTCAAGCGCCGCGTGTTGGTGCCAGGTT
TCCCTCCCCCGCTCGCCCTCTCTCCCTTGTCTCC
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protein sequence of jgi.p|Nanoce1779_2|603930

>mRNA_8769-protein ID=mRNA_8769-protein|Name=jgi.p|Nanoce1779_2|603930|organism=Nannochloropsis oceanica|type=polypeptide|length=217bp
MPSWCLPLLLPSFKFMVHPRRLISFPLDLPSVSLPSVSIHCIYNTLSTFL
RIFLPHTHSLRSPSLLSSSCKLRRQLIHLPTEPCHLVVQRANFILLSTNN
SLQRRKLSFQPMNSGSSRGPLGNEPPVLVNQRLDLMLESVHCHERDTLRR
GEKSIPPRPSSHPSSYRSCCCSSGTSHGPTSSYCTSSTAATPAVVICWGE
GRRGRGLASDSVEVML*
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mRNA from alignment at scaffold_28:76984..77867-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8769 ID=mRNA_8769|Name=jgi.p|Nanoce1779_2|603930|organism=Nannochloropsis oceanica|type=mRNA|length=884bp|location=Sequence derived from alignment at scaffold_28:76984..77867- (Nannochloropsis oceanica)
ACTCTCTACTCTAGAGTTTTTTAAGCCCTTGCTTCTTTGACTCATCATTT
CCAGCTTTTCCTTTCTCTTTCTCCATTCATCGGCAGAAAACTTCGAGGCC
CCCGAGACAGTCAACATCCATGCCATCTTGGTGTCTGCCACTACTGCTTC
CTTCTTTCAAATTTATGGTACATCCAAGGCGTCTAATTTCGTTTCCGCTT
GATTTGCCTTCCGTTTCACTTCCTTCTGTCTCGATTCACTGTATATACAA
CACTCTTTCTACTTTCCTACGTATTTTCCTTCCTCATACCCATTCCCTCC
GCTCTCCCTCGCTCCTTTCCTCCTCCTGCAAGCTCCGCCGTCAGCTTATC
CACCTGCCTACCGAGCCTTGCCATCTGGTAGTGCAACGAGCCAATTTCAT
CCTCCTTTCCACCAATAACTCCCTTCAACGCCGCAAGCTCTCCTTCCAAC
CTATGAATAGTGGCAGTAGCCGCGGTCCCCTCGGCAACGAGCCCCCTGTT
CTTGTTAATCAGCGCCTGGATCTGATGCTTGAATCCGTCCACTGCCACGA
AAGGGACACGCTCAGGAGGGGTGAAAAGAGTATTCCCCCTCGACCTTCCT
CCCATCCCTCCTCCTACCGCTCCTGCTGCTGCAGCTCCGGCACCAGCCAT
GGTCCGACGTCCTCCTACTGCACCTCTTCCACCGCTGCCACCCCTGCCGT
CGTTATCTGTTGGGGTGAGGGAAGAAGAGGCAGAGGGCTGGCCAGCGACA
GTGTCGAAGTCATGCTGTAGCCCTCCCCTTCCTCTCCCCCTCCCTCCTCC
TACTCTTCCAGCGGGACGCAAGCTCAAGCGCCGCGTGTTGGTGCCAGGTT
TCCCTCCCCCGCTCGCCCTCTCTCCCTTGTCTCC
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Coding sequence (CDS) from alignment at scaffold_28:76984..77867-

>mRNA_8769 ID=mRNA_8769|Name=jgi.p|Nanoce1779_2|603930|organism=Nannochloropsis oceanica|type=CDS|length=651bp|location=Sequence derived from alignment at scaffold_28:76984..77867- (Nannochloropsis oceanica)
ATGCCATCTTGGTGTCTGCCACTACTGCTTCCTTCTTTCAAATTTATGGT
ACATCCAAGGCGTCTAATTTCGTTTCCGCTTGATTTGCCTTCCGTTTCAC
TTCCTTCTGTCTCGATTCACTGTATATACAACACTCTTTCTACTTTCCTA
CGTATTTTCCTTCCTCATACCCATTCCCTCCGCTCTCCCTCGCTCCTTTC
CTCCTCCTGCAAGCTCCGCCGTCAGCTTATCCACCTGCCTACCGAGCCTT
GCCATCTGGTAGTGCAACGAGCCAATTTCATCCTCCTTTCCACCAATAAC
TCCCTTCAACGCCGCAAGCTCTCCTTCCAACCTATGAATAGTGGCAGTAG
CCGCGGTCCCCTCGGCAACGAGCCCCCTGTTCTTGTTAATCAGCGCCTGG
ATCTGATGCTTGAATCCGTCCACTGCCACGAAAGGGACACGCTCAGGAGG
GGTGAAAAGAGTATTCCCCCTCGACCTTCCTCCCATCCCTCCTCCTACCG
CTCCTGCTGCTGCAGCTCCGGCACCAGCCATGGTCCGACGTCCTCCTACT
GCACCTCTTCCACCGCTGCCACCCCTGCCGTCGTTATCTGTTGGGGTGAG
GGAAGAAGAGGCAGAGGGCTGGCCAGCGACAGTGTCGAAGTCATGCTGTA
G
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Synonyms
Publications