jgi.p|Nanoce1779_2|603928, mRNA_8768 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|603928
Unique NamemRNA_8768
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1526
Alignment locationscaffold_28:74721..77065 -

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Properties
Property NameValue
TranscriptId604014
TrackFilteredModels2
ProteinId603928
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_28supercontigscaffold_28:74721..77065 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|603928gene_8768Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|603928mRNA_8768-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8768CDS_8768Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8768 ID=mRNA_8768|Name=jgi.p|Nanoce1779_2|603928|organism=Nannochloropsis oceanica|type=mRNA|length=1526bp
CTCTTCCAGCGGGACGCAAGCTCAAGCGCCGCGTGTTGGTGCCAGGTTTC
CCTCCCCCGCTCGCCCTCTCTCCCTTGTCTCCTCCGCCCTCCTCCTCCTC
CTCCTCCTCATCCTCCTCGATTAGAGAAGGGTAGATCAAGGAAGCGTCTT
CCTCCTTTTCCTCCCCATAATACAACCCGATGCCATCCACCCCTCCTTCC
CTCTCTTCCTCGCCCTCGACATGACTGAAGTCATCAAGGCAAAAGCCAAT
ACTGCTTTCGGCCAGCTGGATCCCCGCCTGCTGTCGTCTGTGGTCCTGCA
GCAAGGCCGCATACTCTTTTTGCAACTTTTCGTAATGTTTCTCCAGCTCA
GCCCTGCTCAGATTGTTCATAGCGCTCTGGCCCATGCCCGGGCCAGTGGT
CATCGCGGCCGTGCCAGTCAGAGTCGAGGAAGAGGAGGAGGAAGAGCCAT
GCGTGTGCAGCGTCCATGACCCTTGACGTAAGGCGAGCTCCTTTCGAAGA
GACTGCGCCTCTTCCACCAAAAAGCTTTTTTCCTTTTCCATCCGAAGACG
AACCATCCGTCCCTCCTCCACTTCCTCCCCCAGCGCCTCAGCCTCCTTCC
TGGCCACTTCCAAGGCCCGCTTTCCCGCCTGGATCTGCGCGTGGTGTTCC
TCATTACTCACCGCATGCCCCTCACTGTACCTCTTCATCTCCTCCTCAAG
CCGCTGAAGGACCTCGGCCTGCTTCCGCTCCATGTCCAGCACGTGGGCTT
GAGCTTGTGCATACAACTCACCCACCCTCTTCTCCCCCTCTGCGGTCGCA
TGTGCGACTGCTGCCGCCGCTGCAACCGCTGCTGCCTCCCCCTCCTTTTT
CAACAGCAGCACACAATGCTCTGCAGCCACCAGACGACCCGTCGTTTCCC
CTAGAGCCTTCCTCCCTTCCTCCCCCTCCTTCTTTAACCTCCCCGTTTCG
TCCGTCAATTTCCGCAAGAGCGCCTTCATCCCCAAGGAAGCCAGCCATGC
CCGGGCCTCCATCTCTTCGTGCGCGCGTCGCATGACCTTCTCTTGATGGT
GCACACGCTGCTGCAACTCTTCCTGACTCATCTCTGCCTGGTGCTGGGCC
TCCGTCAAGGCTTGAGAGATGGCCGCGTTGCTGTCCCTGAGACGCTTCCC
TTCTGTCGCTGCTTTTGCCTTAACCATCTTCAGCTGTTCGTGTAGCGTCG
CATTGCCCTCTTTCACGACCTCCCACTCCTGCGTCCGCGTTGTCAGCTCT
GCTTTGGTCTTGCGGTACCTCTCCTCAAAGCTTTCCGCCAGTCGTTTCTG
TGTATCCTTCTCCTCCTCCAGGGATTCCACCCGTGCTACGGCTGTTTCTG
ACACCTGCCCACGCAAGCCCTCCACCTCTGCTTCCAACGCCCTCATCCTC
CTCACCACCTCAGGATTACACTCCGAGAAGCCTCCCCCTACCCCTCCTTC
TCCCCCTCCCTCCCATCCCCCTCCCCTTCCTCCTCCTTCCAGGGCAGCGG
CGAAGGCCGTGGCGTCTGCCCCGCGG
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protein sequence of jgi.p|Nanoce1779_2|603928

>mRNA_8768-protein ID=mRNA_8768-protein|Name=jgi.p|Nanoce1779_2|603928|organism=Nannochloropsis oceanica|type=polypeptide|length=190bp
MTLDVRRAPFEETAPLPPKSFFPFPSEDEPSVPPPLPPPAPQPPSWPLPR
PAFPPGSARGVPHYSPHAPHCTSSSPPQAAEGPRPASAPCPARGLELVHT
THPPSSPPLRSHVRLLPPLQPLLPPPPFSTAAHNALQPPDDPSFPLEPSS
LPPPPSLTSPFRPSISARAPSSPRKPAMPGPPSLRARVA*
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mRNA from alignment at scaffold_28:74721..77065-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8768 ID=mRNA_8768|Name=jgi.p|Nanoce1779_2|603928|organism=Nannochloropsis oceanica|type=mRNA|length=2345bp|location=Sequence derived from alignment at scaffold_28:74721..77065- (Nannochloropsis oceanica)
CTCTTCCAGCGGGACGCAAGCTCAAGCGCCGCGTGTTGGTGCCAGGTTTC
CCTCCCCCGCTCGCCCTCTCTCCCTTGTCTCCTCCGCCCTCCTCCTCCTC
CTCCTCCTCATCCTCCTCGATTAGAGAAGGGTAGATCAAGGAAGCGTCTT
CCTCCTTTTCCTCCCCATAATACAACCCGATGCCATCCACCCCTCCTTCC
CTCTCTTCCTCGCCCTCGACATGACTGAAGTCATCAAGGCAAAAGCCAAT
ACTGCTTTCGGCCAGCTGGATCCCCGCCTAGGAAAATGGAAGAGATGAGA
AGAGAAAGAACCGCACATAAGAAAACGGGATATTTGAGAAAAAGAGACAT
ACACATGTATGCCAGAGAATGCGAGGAAAGTGTTGAGAAAAAGGGGTGTG
TAGGTACATTTCAAACCTACAACCAAGTCTTTCAGACCATCACTCCTCCC
TCCCTCCCTCCCTTCCTCCCTACCTGCTGTCGTCTGTGGTCCTGCAGCAA
GGCCGCATACTCTTTTTGCAACTTTTCGTAATGTTTCTCCAGCTCAGCCC
TGGCGAGGGAGGGAGAAAGGGAGGACAGGCACAGGGCAGTTAGAATCAAG
AACAAGAGGCATTCGGGAAACCACGGCTTTATCCCCTGCTCCCATCTCCC
TTCCTACTTCCATCTCCTTCTTAAGACCTTCTTTTGTACCTGCTCAGATT
GTTCATAGCGCTCTGGCCCATGCCCGGGCCAGTGGTCATCGCGGCCGTGC
CAGTCAGAGTCGAGGAAGAGGAGGAGGAAGAGCCATGCGTGTGCAGCGTC
CATGACCCTTGACGTAAGGCGAGCTCCTTTCGAAGAGACTGCCAAAAGGG
CAAGAAGGGAGGGAGGGAGGGAGGAAGGGAGGGAGGGAGGGATGAATGAG
AATCAAATGTCGGACAATGAGGCACATCATCAGGTGAAAAAACACCTTGT
CGCCCCTCCCTCCCTCTCTCCCTTCTTCCCCTCCCTCCCTCTCTACCTAC
CTGCGCCTCTTCCACCAAAAAGCTTTTTTCCTTTTCCATCCGAAGACGAA
CCATCCGTCCCTCCTCCACTTCCTCCCCCAGCGCCTCAGCCTCCTTCCTG
GCCACTTCCAAGGCCCGCTTTCCCGCCTGGATCTGCGCGTGGTGTTCCTC
ATTACTCACCGCATGCCCCTCACTGTACCTCTTCATCTCCTCCTCAAGCC
GCTGAAGGACCTCGGCCTGCTTCCGCTCCATGTCCAGCACGTGGGCTTGA
GCTTGTGCATACAACTCACCCACCCTCTTCTCCCCCTCTGCGGTCGCATG
TGCGACTGCTGCCGCCGCTGCAACCGCTGCTGCCTCCCCCTCCTTTTTCA
ACAGCAGCACACAATGCTCTGCAGCCACCAGACGACCCGTCGTTTCCCCT
AGAGCCTTCCTCCCTTCCTCCCCCTCCTTCTTTAACCTCCCCGTTTCGTC
CGTCAATTTCCGCAAGAGCGCCTTCATCCCCAAGGAAGCCAGCCATGCCC
GGGCCTCCATCTCTTCGTGCGCGCGTCGCATGACCTTCTCTTGATGGTGC
ACACGCTGCTGCAACTCTTCCTGACTCATCTCTGCCTGGTGCTGGGCCTC
CGTCAAGGCTTGAGAGATGGCCGCGTTGCTGTCCCTGAGACGCTTCCCTG
GGAGGGAGGGAGGGAGGAAGGGAGGGAGGAAGGAAGGAAGGAAGGAAGGA
AGGAAGGAAGGACAGGAGGTAGTTTTGAGGAACTTTTCGTTCAAACCAAG
CTCTTTATGCCACTTTTTCTCCCTCTATCCCTCCTTCCCTACCTCCGTCC
TTACCTTCTGTCGCTGCTTTTGCCTTAACCATCTTCAGCTGTTCGTGTAG
CGTCGCATTGCCCTCTTTCACGACCTCCCACTCCTGCGTCCGCGTTGTCA
GCTCTGCTTTGGTCTTGCGGTACCTAGGGAGGTAGGGAGGGAGGGAGGAA
GGGAGGGAGGGAGGGAAGAAGAAAAAAAGTCAGAGAGGAGAAAGTGATAA
AACTATAGCACTCGTTTCAGTCGTCCTCTCTCGACGAGTCGTCTTCCCCC
TCTCCCTCCCTCCCGCCCTCCCTCCCTCCCGCCTTACCTCTCCTCAAAGC
TTTCCGCCAGTCGTTTCTGTGTATCCTTCTCCTCCTCCAGGGATTCCACC
CGTGCTACGGCTGTTTCTGACACCTGCCCACGCAAGCCCTCCACCTCTGC
TTCCAACGCCCTCATCCTCCTCACCACCTCAGGATTACACTCCGAGAAGC
CTCCCCCTACCCCTCCTTCTCCCCCTCCCTCCCATCCCCCTCCCCTTCCT
CCTCCTTCCAGGGCAGCGGCGAAGGCCGTGGCGTCTGCCCCGCGG
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Coding sequence (CDS) from alignment at scaffold_28:74721..77065-

>mRNA_8768 ID=mRNA_8768|Name=jgi.p|Nanoce1779_2|603928|organism=Nannochloropsis oceanica|type=CDS|length=1140bp|location=Sequence derived from alignment at scaffold_28:74721..77065- (Nannochloropsis oceanica)
CTGCGCCTCTTCCACCAAAAAGCTTTTTTCCTTTTCCATCCGAAGACGAA
CCATCCGTCCCTCCTCCACTTCCTCCCCCAGCGCCTCAGCCTCCTTCCTG
GCCACTTCCAAGGCCCGCTTTCCCGCCTGGATCTGCGCGTGGTGTTCCTC
ATTACTCACCGCATGCCCCTCACTGTACCTCTTCATCTCCTCCTCAAGCC
GCTGAAGGACCTCGGCCTGCTTCCGCTCCATGTCCAGCACGTGGGCTTGA
GCTTGTGCATACAACTCACCCACCCTCTTCTCCCCCTCTGCGGTCGCATG
TGCGACTGCTGCCGCCGCTGCAACCGCTGCTGCCTCCCCCTCCTTTTTCA
ACAGCAGCACACAATGCTCTGCAGCCACCAGACGACCCGTCGTTTCCCCT
AGAGCCTTCCTCCCTTCCTCCCCCTCCTTCTTTAACCTCCCCGTTTCGTC
CGTCAATTTCCGCAAGAGCGCCTTCATCCCCAAGGAAGCCAGCCATGCCC
GGGCCTCCATCTCTTCGTGCGCGCGTCGCATGAATGACCCTTGACGTAAG
GCGAGCTCCTTTCGAAGAGACTGCGCCTCTTCCACCAAAAAGCTTTTTTC
CTTTTCCATCCGAAGACGAACCATCCGTCCCTCCTCCACTTCCTCCCCCA
GCGCCTCAGCCTCCTTCCTGGCCACTTCCAAGGCCCGCTTTCCCGCCTGG
ATCTGCGCGTGGTGTTCCTCATTACTCACCGCATGCCCCTCACTGTACCT
CTTCATCTCCTCCTCAAGCCGCTGAAGGACCTCGGCCTGCTTCCGCTCCA
TGTCCAGCACGTGGGCTTGAGCTTGTGCATACAACTCACCCACCCTCTTC
TCCCCCTCTGCGGTCGCATGTGCGACTGCTGCCGCCGCTGCAACCGCTGC
TGCCTCCCCCTCCTTTTTCAACAGCAGCACACAATGCTCTGCAGCCACCA
GACGACCCGTCGTTTCCCCTAGAGCCTTCCTCCCTTCCTCCCCCTCCTTC
TTTAACCTCCCCGTTTCGTCCGTCAATTTCCGCAAGAGCGCCTTCATCCC
CAAGGAAGCCAGCCATGCCCGGGCCTCCATCTCTTCGTGCGCGCGTCGCA
TGAATGACCCTTGACGTAAGGCGAGCTCCTTTCGAAGAGA
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Synonyms
Publications